MD02G1290200.v1.1

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
34606409 .. 34613679
7271 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1290200.v1.1.491

Sequence Viewer

Length: 1230 bp
ATGATTTCCTTATTAAGCTTAAAAAGCGGTTATAAAATTGAGGGCTCGCTGGCCACCGCAAAACAGACGGCTGAATTAATTCGGTCGGTAATTTCAGCGCAGCGGGTGCCCTACACAAATCAAGCTGGAGCATTGATTGATGCTGTGAAGGCTGTTGGGGAGCAGCTGATTGCTGCAAATCCTGTTGAGCTTGCTGTGGGTAATATTGTGAGCCGTGTTTTGCACATTATTAGGGAGGAGGATCTTTCTCTCACTACTGCTGCTATGGCTGGGTTGAACATGTCAACTGTTAGTGATGATGAAGATGATGACCGTGACAACCATCCGGTTCTATCTGCCGCTGTTGTTGCGGCTGCTGCAAGAAGCACACTGCGTCCACCATCTTTGCAAATGCTGCTTGAGGACATACCTGATGCAGCAGCTGTTCCTCGCACTTCATCATCTGGGGGTGATTCTGAAGAAAAAACCAAATCTGCTGATAAAAGTTCAAGAAGTCGGAGGCTGAAGCATGATGTTATTGAAGCAGTCAATGAACTTATACAAGATATTGGCACTTGCCATGAACAGATTGCTGAGCAAGCAGTAGAGCACATTCACCATAACGAGGTTATATTAACTTTAGGTAGTTCAAGAACAGTACTGGAATTTCTATGTGCCGCGAAGGATAAAAAAAGATCGTTTCGGGTATTTGTTGCAGAGGGAGCTCCAAGGTATCAGGGGCATCTTCTTGCTAGAGAACTAGTTGCAAGAGGTTTACAGACCACGCTGATAACTGATTCAGCTGTTTTTGCCATGATATCTCGAGTCAACATGGTTATCGTTGGCGCTCATGCTGTCATGGCCAATGGGGGGGTTATAGCACCTGTCGGGTTGAATATGGTAGCACTTGCAGCGCAAAGGCATGCTGTCCCTTTTGTTGTACTTGCCGGCAGTCACAAGTTGTGCCCTTTGTATCCTCACAATCCTGAAGTCTTATTTAATGAGTTAAGATCTCCTTCTGAGCTACTGGATTTTGGAGAGTTCTCAGATTGTATGGATTTTGGAAGTGGCACTGCTTCGTCGCTTCTTCAAGTTGTCAATCCTACATTTGATTATGTGCCACCAAAGCTTGTCAGTCTATTTATCACTGATACGGGAGGGCATAATCCTTCATACGTGTACCGGCTCATCGCAGATTATTATTCTGCTGATGATTTGGTGGTCCAACGAAGACCTGCTATGGGCAGTTGA

Protein Analysis

410

Amino Acids

43.96

Weight (kDa)

5.63

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 12 - 383 2.6e-67 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 1222
AccB1I GGYRCC 1 cut(s) 106
AccII CGCG 1 cut(s) 659
AciI CCGC 6 cut(s) 27, 57, 103, 339, 350, 657
AclWI GGATC 1 cut(s) 249
AcoI YGGCCR 2 cut(s) 51, 840
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 3 cut(s) 477, 524, 987
AfaI GTAC 3 cut(s) 639, 921, 1160
AfiI CCNNNNNNNGG 3 cut(s) 604, 849, 1220
AflIII ACRYGT 2 cut(s) 279, 1155
AgsI TTSAA 6 cut(s) 277, 489, 521, 630, 874, 1070
AhlI ACTAGT 1 cut(s) 739
AluBI AGCT 9 cut(s) 18, 125, 166, 190, 422, 704, 782, 1003, 1108
AluI AGCT 9 cut(s) 18, 125, 166, 190, 422, 704, 782, 1003, 1108
Alw21I GWGCWC 2 cut(s) 591, 706
AlwI GGATC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 801
AoxI GGCC 2 cut(s) 51, 840
ApoI RAATTY 1 cut(s) 644
AseI ATTAAT 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 78
AspLEI GCGC 3 cut(s) 100, 827, 895
AspS9I GGNCC 1 cut(s) 1201
AsuHPI GGTGA 2 cut(s) 461, 587
AvaI CYCGRG 1 cut(s) 801
AvaII GGWCC 1 cut(s) 1201
BaeGI GKGCMC 2 cut(s) 111, 947
BalI TGGCCA 2 cut(s) 53, 842
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 2 cut(s) 47, 706
BbsI GAAGAC 1 cut(s) 1216
Bbv12I GWGCWC 2 cut(s) 591, 706
BccI CCATC 2 cut(s) 330, 388
BceAI ACGGC 2 cut(s) 84, 198
BciVI GTATCC 1 cut(s) 963
BcuI ACTAGT 1 cut(s) 739
BfaI CTAG 2 cut(s) 732, 740
BfoI RGCGCY 1 cut(s) 828
BfuAI ACCTGC 1 cut(s) 1222
BfuI GTATCC 1 cut(s) 963
BglII AGATCT 1 cut(s) 989
BlpI GCTNAGC 1 cut(s) 573
BmcAI AGTACT 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 1201
BmeT110I CYCGRG 1 cut(s) 801
BmgT120I GGNCC 1 cut(s) 1201
BmiI GGNNCC 1 cut(s) 108
BmsI GCATC 3 cut(s) 130, 403, 730
BpiI GAAGAC 1 cut(s) 1216
BpmI CTGGAG 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 419
BsaAI YACGTR 1 cut(s) 1156
BsaJI CCNNGG 1 cut(s) 707
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 3 cut(s) 604, 849, 1220
Bse118I RCCGGY 2 cut(s) 926, 1161
Bse1I ACTGG 2 cut(s) 645, 1011
BseDI CCNNGG 1 cut(s) 707
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 3 cut(s) 604, 849, 1220
BseMII CTCAG 3 cut(s) 564, 990, 1038
BseNI ACTGG 2 cut(s) 645, 1011
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 2 cut(s) 111, 947
BseYI CCCAGC 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 659
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 2 cut(s) 53, 842
BshNI GGYRCC 1 cut(s) 106
BsiEI CGRYCG 1 cut(s) 86
BsiHKAI GWGCWC 2 cut(s) 591, 706
BsiHKCI CYCGRG 1 cut(s) 801
BsiSI CCGG 3 cut(s) 326, 927, 1162
BslFI GGGAC 1 cut(s) 893
BslI CCNNNNNNNGG 3 cut(s) 604, 849, 1220
BsmFI GGGAC 1 cut(s) 893
BsnI GGCC 2 cut(s) 53, 842
BsoBI CYCGRG 1 cut(s) 801
Bsp1286I GDGCHC 5 cut(s) 47, 111, 591, 706, 947
Bsp143I GATC 3 cut(s) 241, 674, 989
Bsp1720I GCTNAGC 1 cut(s) 573
BspACI CCGC 6 cut(s) 27, 57, 103, 339, 350, 657
BspANI GGCC 2 cut(s) 53, 842
BspCNI CTCAG 3 cut(s) 565, 991, 1037
BspFNI CGCG 1 cut(s) 659
BspLI GGNNCC 1 cut(s) 108
BspMI ACCTGC 1 cut(s) 1222
BspPI GGATC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 106
BsrFI RCCGGY 2 cut(s) 926, 1161
BsrI ACTGG 2 cut(s) 645, 1011
BssAI RCCGGY 2 cut(s) 926, 1161
BssECI CCNNGG 1 cut(s) 707
BssMI GATC 3 cut(s) 241, 674, 989
BssT1I CCWWGG 1 cut(s) 707
Bst4CI ACNGT 3 cut(s) 289, 314, 637
BstAPI GCANNNNNTGC 2 cut(s) 106, 394
BstBAI YACGTR 1 cut(s) 1156
BstC8I GCNNGC 6 cut(s) 47, 51, 192, 579, 903, 928
BstDEI CTNAG 3 cut(s) 573, 999, 1024
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 1 cut(s) 659
BstH2I RGCGCY 1 cut(s) 828
BstHHI GCGC 3 cut(s) 100, 827, 895
BstKTI GATC 3 cut(s) 244, 677, 992
BstMBI GATC 3 cut(s) 241, 674, 989
BstMCI CGRYCG 1 cut(s) 86
BstNSI RCATGY 2 cut(s) 283, 905
BstSLI GKGCMC 2 cut(s) 111, 947
BstUI CGCG 1 cut(s) 659
BstV2I GAAGAC 1 cut(s) 1216
BstX2I RGATCY 2 cut(s) 241, 989
BstYI RGATCY 2 cut(s) 241, 989
BsuI GTATCC 1 cut(s) 963
BsuRI GGCC 2 cut(s) 53, 842
BtgZI GCGATG 1 cut(s) 1153
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 2 cut(s) 368, 1050
BtsIMutI CAGTG 3 cut(s) 368, 1050, 1125
BveI ACCTGC 1 cut(s) 1222
Cac8I GCNNGC 6 cut(s) 47, 51, 192, 579, 903, 928
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 3 cut(s) 100, 827, 895
Cfr10I RCCGGY 2 cut(s) 926, 1161
Cfr13I GGNCC 1 cut(s) 1201
CseI GACGC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 638, 920, 1159
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 8 cut(s) 280, 509, 560, 793, 811, 830, 838, 902
CviQI GTAC 3 cut(s) 638, 920, 1159
DdeI CTNAG 3 cut(s) 573, 999, 1024
DpnI GATC 3 cut(s) 243, 676, 991
DpnII GATC 3 cut(s) 241, 674, 989
EaeI YGGCCR 2 cut(s) 51, 840
Ecl136II GAGCTC 1 cut(s) 704
Eco130I CCWWGG 1 cut(s) 707
Eco24I GRGCYC 2 cut(s) 47, 706
Eco32I GATATC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 1201
Eco53kI GAGCTC 1 cut(s) 704
Eco57I CTGAAG 3 cut(s) 477, 524, 987
Eco88I CYCGRG 1 cut(s) 801
EcoICRI GAGCTC 1 cut(s) 704
EcoRV GATATC 1 cut(s) 798
EcoT14I CCWWGG 1 cut(s) 707
EcoT38I GRGCYC 2 cut(s) 47, 706
ErhI CCWWGG 1 cut(s) 707
FaeI CATG 8 cut(s) 283, 512, 563, 796, 814, 833, 841, 905
FalI AAGNNNNNCTT 2 cut(s) 979, 1011
FaqI GGGAC 1 cut(s) 893
FatI CATG 8 cut(s) 279, 508, 559, 792, 810, 829, 837, 901
FauI CCCGC 1 cut(s) 96
FokI GGATG 1 cut(s) 309
FriOI GRGCYC 2 cut(s) 47, 706
FspBI CTAG 2 cut(s) 732, 740
GlaI GCGC 3 cut(s) 99, 826, 894
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 828
HaeIII GGCC 2 cut(s) 53, 842
HapII CCGG 3 cut(s) 326, 927, 1162
HgaI GACGC 1 cut(s) 362
HhaI GCGC 3 cut(s) 100, 827, 895
Hin1II CATG 8 cut(s) 283, 512, 563, 796, 814, 833, 841, 905
Hin6I GCGC 3 cut(s) 98, 825, 893
HinP1I GCGC 3 cut(s) 98, 825, 893
HincII GTYRAC 2 cut(s) 285, 808
HindII GTYRAC 2 cut(s) 285, 808
HindIII AAGCTT 2 cut(s) 16, 1106
HinfI GANTC 3 cut(s) 452, 776, 804
HpaII CCGG 3 cut(s) 326, 927, 1162
HphI GGTGA 2 cut(s) 461, 587
Hpy166II GTNNAC 5 cut(s) 285, 377, 755, 808, 1159
Hpy188I TCNGA 4 cut(s) 457, 498, 1000, 1027
Hpy188III TCNNGA 4 cut(s) 489, 630, 801, 965
Hpy8I GTNNAC 5 cut(s) 285, 377, 755, 808, 1159
Hpy99I CGWCG 1 cut(s) 1063
HpyAV CCTTC 4 cut(s) 142, 655, 1005, 1158
HpyCH4III ACNGT 3 cut(s) 289, 314, 637
HpyCH4IV ACGT 1 cut(s) 1155
HpyCH4V TGCA 8 cut(s) 176, 223, 359, 388, 416, 695, 746, 890
HpyF3I CTNAG 3 cut(s) 573, 999, 1024
HpySE526I ACGT 1 cut(s) 1155
Hsp92II CATG 8 cut(s) 283, 512, 563, 796, 814, 833, 841, 905
HspAI GCGC 3 cut(s) 98, 825, 893
KroI GCCGGC 1 cut(s) 926
KroNI GCCGGC 1 cut(s) 928
Kzo9I GATC 3 cut(s) 241, 674, 989
LmnI GCTCC 4 cut(s) 128, 160, 701, 709
LweI GCATC 3 cut(s) 130, 403, 730
MaeI CTAG 2 cut(s) 732, 740
MaeII ACGT 1 cut(s) 1155
MaeIII GTNAC 2 cut(s) 314, 932
MalI GATC 3 cut(s) 243, 676, 991
MboI GATC 3 cut(s) 241, 674, 989
MboII GAAGA 5 cut(s) 314, 470, 716, 1058, 1221
MflI RGATCY 2 cut(s) 241, 989
MhlI GDGCHC 5 cut(s) 47, 111, 591, 706, 947
MlsI TGGCCA 2 cut(s) 53, 842
MluCI AATT 5 cut(s) 36, 74, 78, 90, 644
MluNI TGGCCA 2 cut(s) 53, 842
MlyI GAGTC 1 cut(s) 813
MmeI TCCRAC 2 cut(s) 476, 1228
Mox20I TGGCCA 2 cut(s) 53, 842
MroNI GCCGGC 1 cut(s) 926
MroXI GAANNNNTTC 1 cut(s) 78
MscI TGGCCA 2 cut(s) 53, 842
MseI TTAA 6 cut(s) 14, 20, 77, 614, 978, 986
Msp20I TGGCCA 2 cut(s) 53, 842
MspA1I CMGCKG 5 cut(s) 103, 166, 341, 422, 782
MspI CCGG 3 cut(s) 326, 927, 1162
MvnI CGCG 1 cut(s) 659
NaeI GCCGGC 1 cut(s) 928
NdeII GATC 3 cut(s) 241, 674, 989
NgoMIV GCCGGC 1 cut(s) 926
NlaIII CATG 8 cut(s) 283, 512, 563, 796, 814, 833, 841, 905
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 2 cut(s) 314, 932
NspI RCATGY 2 cut(s) 283, 905
PaeI GCATGC 1 cut(s) 905
PaeR7I CTCGAG 1 cut(s) 801
PciI ACATGT 1 cut(s) 279
PdiI GCCGGC 1 cut(s) 928
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 2 cut(s) 452, 776
PleI GAGTC 1 cut(s) 812
PpsI GAGTC 1 cut(s) 812
Ppu21I YACGTR 1 cut(s) 1156
PscI ACATGT 1 cut(s) 279
PshBI ATTAAT 1 cut(s) 77
PsiI TTATAA 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 706
PspFI CCCAGC 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 1201
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 241, 989
PvuII CAGCTG 3 cut(s) 166, 422, 782
RsaI GTAC 3 cut(s) 639, 921, 1160
RsaNI GTAC 3 cut(s) 638, 920, 1159
SacI GAGCTC 1 cut(s) 706
SaqAI TTAA 6 cut(s) 14, 20, 77, 614, 978, 986
Sau3AI GATC 3 cut(s) 241, 674, 989
Sau96I GGNCC 1 cut(s) 1201
ScaI AGTACT 1 cut(s) 639
SchI GAGTC 1 cut(s) 813
SduI GDGCHC 5 cut(s) 47, 111, 591, 706, 947
SfaNI GCATC 3 cut(s) 130, 403, 730
Sfr274I CTCGAG 1 cut(s) 801
SinI GGWCC 1 cut(s) 1201
SlaI CTCGAG 1 cut(s) 801
SmlI CTYRAG 2 cut(s) 398, 801
SmoI CTYRAG 2 cut(s) 398, 801
SpeI ACTAGT 1 cut(s) 739
SphI GCATGC 1 cut(s) 905
Sse9I AATT 5 cut(s) 36, 74, 78, 90, 644
SsiI CCGC 6 cut(s) 27, 57, 103, 339, 350, 657
SspI AATATT 1 cut(s) 205
SspMI CTAG 2 cut(s) 732, 740
SstI GAGCTC 1 cut(s) 706
StyI CCWWGG 1 cut(s) 707
TaaI ACNGT 3 cut(s) 289, 314, 637
TaiI ACGT 1 cut(s) 1158
TaqI TCGA 1 cut(s) 802
TaqII GACCGA 1 cut(s) 72
TasI AATT 5 cut(s) 36, 74, 78, 90, 644
TatI WGTACW 2 cut(s) 637, 919
TauI GCSGC 3 cut(s) 341, 353, 659
TfiI GAWTC 2 cut(s) 452, 776
Tru1I TTAA 6 cut(s) 14, 20, 77, 614, 978, 986
Tru9I TTAA 6 cut(s) 14, 20, 77, 614, 978, 986
TscAI CASTG 3 cut(s) 375, 1057, 1132
TseFI GTSAC 2 cut(s) 314, 932
Tsp45I GTSAC 2 cut(s) 314, 932
TspDTI ATGAA 5 cut(s) 315, 426, 546, 576, 1140
TspRI CASTG 3 cut(s) 375, 1057, 1132
VpaK11BI GGWCC 1 cut(s) 1201
VspI ATTAAT 1 cut(s) 77
XapI RAATTY 1 cut(s) 644
XceI RCATGY 2 cut(s) 283, 905
XhoI CTCGAG 1 cut(s) 801
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 2 cut(s) 732, 740
ZrmI AGTACT 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.