Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Forward (+)

25273243 .. 25276732

Gene Structure 3490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG164300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTGCACCACCACATCTTCCAAAACCAGTGCACAATCGCCACCCTCTTCAAAACCACCCAAAGTCTAAGCAAAGCAAATTCGCTCTGCACGAATGGATCTGAGGACGAACACGCACCTAGGCAGTTCAAAAACAGTACAGGAATTCCTTTTTGCTGCAAAGGAGAAAAAAAAAGATCATTTTGGGTATTTGTTGCAGAGGGAGCTCCAAGGTATCAGGGGCATCTTCTTGCAAAAGAATTGGCTGGAAGAGGTTTACAAACAGCGCTGATTGCTGATTCTGCAATTTTTGCTATGATATCTCAAGTGATCATGGTTATAGTTGGTGCTCATGCTGTCATGGCCAATGGTGGTGTTATAGCACCCGTTGGGTTGAATATGGTTGCACTTGCAGCCCAAAGGCATGCTGTCCCTTTTGTTGTACTTGCTGGCAGTTACAAGCTCAGTAATTATTCTCCCAGCTGGGCTCTGGGGTTGTTGTGTGACAACTCAGGCCATGAAGTATCGCCTTACACTCTTTCGCAGGAGAAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

178

Amino Acids

19.17

Weight (kDa)

8.63

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	56 - 152	4.4e-29	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	79, 144
AfaI	GTAC	2 cut(s)	139, 423
AfeI	AGCGCT	1 cut(s)	267
AgsI	TTSAA	3 cut(s)	52, 130, 376
AluBI	AGCT	3 cut(s)	206, 442, 462
AluI	AGCT	3 cut(s)	206, 442, 462
Alw21I	GWGCWC	3 cut(s)	35, 208, 331
Alw44I	GTGCAC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	106
Aor51HI	AGCGCT	1 cut(s)	267
AoxI	GGCC	2 cut(s)	342, 493
ApaLI	GTGCAC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	4, 156, 392
ApoI	RAATTY	2 cut(s)	79, 144
AspA2I	CCTAGG	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	268
AvrII	CCTAGG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	344
BanII	GRGCYC	2 cut(s)	208, 469
Bbv12I	GWGCWC	3 cut(s)	35, 208, 331
BbvI	GCAGC	2 cut(s)	143, 404
BclI	TGATCA	1 cut(s)	309
BfaI	CTAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	3 cut(s)	5, 157, 393
BlnI	CCTAGG	1 cut(s)	119
BlsI	GCNGC	3 cut(s)	6, 158, 394
BmsI	GCATC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	119, 209
Bse1I	ACTGG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	119, 209
BseMII	CTCAG	3 cut(s)	93, 457, 504
BseNI	ACTGG	1 cut(s)	28
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	143, 404
BseYI	CCCAGC	2 cut(s)	458, 462
BsgI	GTGCAG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	344, 495
BsiHKAI	GWGCWC	3 cut(s)	35, 208, 331
BslFI	GGGAC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	344, 495
Bsp1286I	GDGCHC	4 cut(s)	35, 208, 331, 469
Bsp143I	GATC	3 cut(s)	98, 176, 309
BspANI	GGCC	2 cut(s)	344, 495
BspCNI	CTCAG	3 cut(s)	94, 456, 503
BspPI	GGATC	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	119, 209
BssMI	GATC	3 cut(s)	98, 176, 309
BssT1I	CCWWGG	2 cut(s)	119, 209
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	2 cut(s)	53, 244
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	405, 430
BstDEI	CTNAG	4 cut(s)	68, 102, 443, 490
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	3 cut(s)	101, 179, 312
BstMBI	GATC	3 cut(s)	98, 176, 309
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 272, 281, 290, 341, 392
BstNSI	RCATGY	1 cut(s)	407
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	143, 404
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	344, 495
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	405, 430
CfoI	GCGC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	138, 422
CviAII	CATG	5 cut(s)	313, 332, 340, 404, 497
CviJI	RGCY	8 cut(s)	206, 245, 344, 395, 442, 462, 467, 495
CviKI_1	RGCY	8 cut(s)	206, 245, 344, 395, 442, 462, 467, 495
CviQI	GTAC	2 cut(s)	138, 422
DdeI	CTNAG	4 cut(s)	68, 102, 443, 490
DpnI	GATC	3 cut(s)	100, 178, 311
DpnII	GATC	3 cut(s)	98, 176, 309
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	53, 244
EarI	CTCTTC	2 cut(s)	53, 244
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	119, 209
Eco24I	GRGCYC	2 cut(s)	208, 469
Eco32I	GATATC	1 cut(s)	300
Eco47III	AGCGCT	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	119, 209
EcoT38I	GRGCYC	2 cut(s)	208, 469
ErhI	CCWWGG	2 cut(s)	119, 209
FaeI	CATG	5 cut(s)	316, 335, 343, 407, 500
FaiI	YATR	9 cut(s)	296, 314, 320, 333, 341, 359, 380, 405, 498
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	5 cut(s)	312, 331, 339, 403, 496
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	5, 157, 393
FriOI	GRGCYC	2 cut(s)	208, 469
Fsp4HI	GCNGC	3 cut(s)	5, 157, 393
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	3 cut(s)	5, 157, 393
GsaI	CCCAGC	2 cut(s)	462, 466
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	344, 495
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	5 cut(s)	316, 335, 343, 407, 500
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	33, 257
Hpy188I	TCNGA	1 cut(s)	103
Hpy8I	GTNNAC	2 cut(s)	33, 257
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	9 cut(s)	7, 33, 90, 159, 197, 233, 284, 386, 392
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 272, 281, 290, 341, 392
HpyF3I	CTNAG	4 cut(s)	68, 102, 443, 490
Hsp92II	CATG	5 cut(s)	316, 335, 343, 407, 500
HspAI	GCGC	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	98, 176, 309
LmnI	GCTCC	2 cut(s)	203, 211
Lsp1109I	GCAGC	2 cut(s)	143, 404
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	434, 482
MalI	GATC	3 cut(s)	100, 178, 311
MboI	GATC	3 cut(s)	98, 176, 309
MboII	GAAGA	4 cut(s)	10, 40, 218, 261
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	4 cut(s)	35, 208, 331, 469
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	5 cut(s)	79, 144, 239, 285, 448
MluNI	TGGCCA	1 cut(s)	344
MnlI	CCTC	4 cut(s)	56, 97, 193, 245
Mox20I	TGGCCA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	462
MwoI	GCNNNNNNNGC	6 cut(s)	203, 272, 281, 290, 341, 392
NdeII	GATC	3 cut(s)	98, 176, 309
NlaIII	CATG	5 cut(s)	316, 335, 343, 407, 500
NmuCI	GTSAC	1 cut(s)	482
NspI	RCATGY	1 cut(s)	407
PaeI	GCATGC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	6, 158, 394
Psp124BI	GAGCTC	1 cut(s)	208
PspFI	CCCAGC	2 cut(s)	458, 462
PsuI	RGATCY	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	462
RsaI	GTAC	2 cut(s)	139, 423
RsaNI	GTAC	2 cut(s)	138, 422
SacI	GAGCTC	1 cut(s)	208
SatI	GCNGC	3 cut(s)	5, 157, 393
Sau3AI	GATC	3 cut(s)	98, 176, 309
SduI	GDGCHC	4 cut(s)	35, 208, 331, 469
SetI	ASST	6 cut(s)	121, 208, 215, 256, 444, 464
SfaNI	GCATC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	5 cut(s)	79, 144, 239, 285, 448
SspMI	CTAG	1 cut(s)	120
SstI	GAGCTC	1 cut(s)	208
StyI	CCWWGG	2 cut(s)	119, 209
TaaI	ACNGT	1 cut(s)	137
TasI	AATT	5 cut(s)	79, 144, 239, 285, 448
TatI	WGTACW	2 cut(s)	137, 421
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	3 cut(s)	4, 156, 392
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	35
VneI	GTGCAC	1 cut(s)	31
XapI	RAATTY	2 cut(s)	79, 144
XceI	RCATGY	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmaJI	CCTAGG	1 cut(s)	119
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.