Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

62525089 .. 62527054

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGCAGGACTCGGCAAAGGCCAAATCGGTTGTCTCCCTTAGTGTTCTCACAAGGAAAGCTTTATCTCTGGTTCTGTTGATAGAACTGCCATGCTTTAGGATCAGTGGGCTGACAAGTGCCAGGTATCAGGGGCATCTTCTTGCAAAAGAATTGGCTGCAAGAGGTTTACAAACCACGCTGATTACTGATTCTGCAATTTTTGCTATGATATCTCAAGTGATCATGGTTATAGTTGGTGCTCATGCTGTCATGGCCAGTGGTGGTGCTATAGCACCTGTTGGTTTGAATATGGTTGCACTTGCAGCCCAAAGGCATGCTGTACCTTTTGTTGTGCTTGCTGGCGGTTACAAGGTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

121

Amino Acids

12.49

Weight (kDa)

9.89

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	42 - 119	2.1e-21	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	255
AfaI	GTAC	1 cut(s)	324
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	2 cut(s)	21, 255
ApeKI	GCWGC	2 cut(s)	158, 305
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
BalI	TGGCCA	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	145, 317
BciT130I	CCWGG	1 cut(s)	124
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	2 cut(s)	159, 306
BlsI	GCNGC	2 cut(s)	160, 307
Bme1390I	CCNGG	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	145
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	145, 317
BshFI	GGCC	2 cut(s)	23, 257
BsiHKAI	GWGCWC	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	23, 257
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	102, 222
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	2 cut(s)	23, 257
BspPI	GGATC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	102, 222
Bst2UI	CCWGG	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	318, 339, 343
BstDEI	CTNAG	1 cut(s)	41
BstKTI	GATC	2 cut(s)	105, 225
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	2 cut(s)	102, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 254, 305
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	145, 317
BsuRI	GGCC	2 cut(s)	23, 257
BtsIMutI	CAGTG	2 cut(s)	112, 265
Cac8I	GCNNGC	3 cut(s)	318, 339, 343
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	5 cut(s)	93, 226, 245, 253, 317
CviJI	RGCY	6 cut(s)	23, 62, 112, 158, 257, 308
CviKI_1	RGCY	6 cut(s)	23, 62, 112, 158, 257, 308
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	104, 224
DpnII	GATC	2 cut(s)	102, 222
EaeI	YGGCCR	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	122
EcoRV	GATATC	1 cut(s)	213
FaeI	CATG	5 cut(s)	96, 229, 248, 256, 320
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FatI	CATG	5 cut(s)	92, 225, 244, 252, 316
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	159, 306
Fsp4HI	GCNGC	2 cut(s)	159, 306
GluI	GCNGC	2 cut(s)	159, 306
HaeIII	GGCC	2 cut(s)	23, 257
Hin1II	CATG	5 cut(s)	96, 229, 248, 256, 320
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	2 cut(s)	11, 191
Hpy166II	GTNNAC	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	170
HpyCH4V	TGCA	5 cut(s)	146, 161, 197, 299, 305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 254, 305
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	5 cut(s)	96, 229, 248, 256, 320
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	102, 222
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	56, 109, 116, 136, 271, 291, 327
Lsp1109I	GCAGC	2 cut(s)	145, 317
LweI	GCATC	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	347, 355
MalI	GATC	2 cut(s)	104, 224
MboI	GATC	2 cut(s)	102, 222
MboII	GAAGA	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	152, 198
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	3 cut(s)	203, 254, 305
NdeII	GATC	2 cut(s)	102, 222
NlaIII	CATG	5 cut(s)	96, 229, 248, 256, 320
NspI	RCATGY	1 cut(s)	320
PaeI	GCATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	160, 307
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SatI	GCNGC	2 cut(s)	159, 306
Sau3AI	GATC	2 cut(s)	102, 222
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	6 cut(s)	64, 128, 169, 280, 328, 357
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	2 cut(s)	152, 198
SsiI	CCGC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	122
TasI	AATT	2 cut(s)	152, 198
TfiI	GAWTC	1 cut(s)	191
TscAI	CASTG	2 cut(s)	112, 265
TseI	GCWGC	2 cut(s)	158, 305
TspRI	CASTG	2 cut(s)	112, 265
XceI	RCATGY	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.