Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Forward (+)

65403846 .. 65407038

Gene Structure 3193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG424800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAAAGAGAATAATATCTTATATGTTCTGTGTTTCTGCAGTGAGGTTATATTAACTCTAGGCAGTTCAAAAACAGTACAGGAATTCCTTTTTGCTGCAAAGGAGAAAAAAAAAAGATCATTTCGGGTATTTGTTGCAGAGGGAGCTCCAAGGTATCAAGGGCATCTTCTTGCAAAAGAATTGGCTGGAAGAGGTTTACAAACAGCGCTGATTACTGATTCTGCAATTTTTGCTATGATATCTCAAGTGATCATGGTAGGAGGCAGTCTTATATTTTCCATTTGGGAATCTACATCCTATGTTTCCAGCTTGATTGAATTTTGTATTTTTAAGGTTATAGTTGGTGCTCATGCTGTCATGGCCAATGGTGGTGTTATAGCACCTGTTGGGTTGAATATGGCTGCACTTGCAGCCCAAAGGCATGTTGTCCCTTTTGTTGTACTTGCTGGCAGTTACAAGGTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

155

Amino Acids

16.72

Weight (kDa)

9.27

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	15 - 87	2.1e-17	Initiation factor 2 subunit family
IF-2B	PF01008	101 - 154	2.7e-11	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	2 cut(s)	83, 317
AfaI	GTAC	2 cut(s)	78, 441
AfeI	AGCGCT	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	69, 317, 394
AluBI	AGCT	2 cut(s)	146, 309
AluI	AGCT	2 cut(s)	146, 309
Alw21I	GWGCWC	2 cut(s)	148, 349
Aor51HI	AGCGCT	1 cut(s)	207
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	3 cut(s)	95, 401, 410
ApoI	RAATTY	2 cut(s)	83, 317
AspLEI	GCGC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	148, 349
BbvI	GCAGC	3 cut(s)	82, 388, 422
BclI	TGATCA	1 cut(s)	249
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	37
BfoI	RGCGCY	1 cut(s)	209
BisI	GCNGC	3 cut(s)	96, 402, 411
BlsI	GCNGC	3 cut(s)	97, 403, 412
BmsI	GCATC	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	293
BseXI	GCAGC	3 cut(s)	82, 388, 422
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	362
BsiHKAI	GWGCWC	2 cut(s)	148, 349
BslFI	GGGAC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	148, 349
Bsp143I	GATC	2 cut(s)	116, 249
BspANI	GGCC	1 cut(s)	362
BspMAI	CTGCAG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	2 cut(s)	116, 249
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	2 cut(s)	119, 252
BstMBI	GATC	2 cut(s)	116, 249
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 230, 359, 407, 410
BstNSI	RCATGY	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	82, 388, 422
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	293
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	448
CfoI	GCGC	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	77, 440
CviAII	CATG	4 cut(s)	253, 350, 358, 422
CviJI	RGCY	6 cut(s)	146, 185, 309, 362, 401, 413
CviKI_1	RGCY	6 cut(s)	146, 185, 309, 362, 401, 413
CviQI	GTAC	2 cut(s)	77, 440
DpnI	GATC	2 cut(s)	118, 251
DpnII	GATC	2 cut(s)	116, 249
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	240
Eco47III	AGCGCT	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	83
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	4 cut(s)	256, 353, 361, 425
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	4 cut(s)	252, 349, 357, 421
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	96, 402, 411
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	3 cut(s)	96, 402, 411
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	3 cut(s)	96, 402, 411
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	4 cut(s)	256, 353, 361, 425
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	2 cut(s)	218, 287
Hpy166II	GTNNAC	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	7 cut(s)	39, 98, 137, 173, 224, 404, 410
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 230, 359, 407, 410
Hsp92II	CATG	4 cut(s)	256, 353, 361, 425
HspAI	GCGC	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	116, 249
LmnI	GCTCC	2 cut(s)	143, 151
LpnPI	CCDG	5 cut(s)	65, 171, 319, 396, 432
Lsp1109I	GCAGC	3 cut(s)	82, 388, 422
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	452, 460
MalI	GATC	2 cut(s)	118, 251
MboI	GATC	2 cut(s)	116, 249
MboII	GAAGA	2 cut(s)	158, 201
MhlI	GDGCHC	2 cut(s)	148, 349
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	4 cut(s)	83, 179, 225, 317
MluNI	TGGCCA	1 cut(s)	362
MnlI	CCTC	4 cut(s)	37, 133, 185, 254
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	2 cut(s)	53, 330
Msp20I	TGGCCA	1 cut(s)	362
MwoI	GCNNNNNNNGC	5 cut(s)	143, 230, 359, 407, 410
NdeII	GATC	2 cut(s)	116, 249
NlaIII	CATG	4 cut(s)	256, 353, 361, 425
NspI	RCATGY	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	218, 287
PkrI	GCNGC	3 cut(s)	97, 403, 412
Psp124BI	GAGCTC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	78, 441
RsaNI	GTAC	2 cut(s)	77, 440
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	53, 330
SatI	GCNGC	3 cut(s)	96, 402, 411
Sau3AI	GATC	2 cut(s)	116, 249
SduI	GDGCHC	2 cut(s)	148, 349
SetI	ASST	8 cut(s)	48, 148, 155, 196, 311, 336, 385, 462
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	83, 179, 225, 317
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	4 cut(s)	83, 179, 225, 317
TatI	WGTACW	2 cut(s)	76, 439
TfiI	GAWTC	2 cut(s)	218, 287
Tru1I	TTAA	2 cut(s)	53, 330
Tru9I	TTAA	2 cut(s)	53, 330
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	3 cut(s)	95, 401, 410
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	2 cut(s)	83, 317
XceI	RCATGY	1 cut(s)	425
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.