Rroxscaffold_1G00066950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000605
Physical Location & Seq
Forward (+)
88376722 .. 88377934
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066950.1

Sequence Viewer

Length: 393 bp
ATGGCTGTAGTTGCAAGTGCAATTACTCAATTGCAATTAAATGAAGCTACCGAGTCATACAAGAGAATGGACAAAATTTTGAGATCTTTTGGGATATGGGTGGCAGAAATTGCAAAGAAAGTTGTCATGGATATGACAAATGCAAGGCTTTATGCCACTACCTATACCGAAGTGTTCACCGAAATTTATAAGACCCCGCAACTTTTTGAATATGAGATCAGGAACTCGGATGAGTTATTCAATGATGGACTTGCTAAACATTTTCCTCAAATTAAGTCTGCATCAACTCCTTTGAGGTATGGTTTTCCCTCGCCTATCTCAATTGTTACTACTCTTCATTCTCGTGGCATTAGTCAAGTGTTTTACTGCTCTTGGTGTGATGGAGACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.88

Weight (kDa)

6.09

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
AciI CCGC 1 cut(s) 197
AcsI RAATTY 2 cut(s) 75, 183
AgsI TTSAA 2 cut(s) 209, 241
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 378
ApoI RAATTY 2 cut(s) 75, 183
AsuHPI GGTGA 1 cut(s) 169
BauI CACGAG 1 cut(s) 342
BccI CCATC 2 cut(s) 239, 374
BcoDI GTCTC 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 83
BmsI GCATC 1 cut(s) 290
BseGI GGATG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 378
Bsp143I GATC 2 cut(s) 83, 216
BspACI CCGC 1 cut(s) 197
BssMI GATC 2 cut(s) 83, 216
BssSI CACGAG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 110
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 2 cut(s) 86, 219
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 83, 216
BstMWI GCNNNNNNNGC 2 cut(s) 11, 110
BstSFI CTRYAG 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BtsCI GGATG 1 cut(s) 235
CviAII CATG 1 cut(s) 127
CviJI RGCY 3 cut(s) 5, 47, 148
CviKI_1 RGCY 3 cut(s) 5, 47, 148
DpnI GATC 2 cut(s) 85, 218
DpnII GATC 2 cut(s) 83, 216
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
FaeI CATG 1 cut(s) 130
FaiI YATR 9 cut(s) 58, 97, 128, 134, 153, 165, 189, 213, 300
FatI CATG 1 cut(s) 126
FauI CCCGC 1 cut(s) 204
FokI GGATG 1 cut(s) 242
Hin1II CATG 1 cut(s) 130
HinfI GANTC 1 cut(s) 53
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 177
HpyCH4V TGCA 6 cut(s) 14, 20, 34, 113, 143, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 110
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 2 cut(s) 83, 216
LpnPI CCDG 1 cut(s) 205
LweI GCATC 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 325
MalI GATC 2 cut(s) 85, 218
MboI GATC 2 cut(s) 83, 216
MboII GAAGA 1 cut(s) 326
MfeI CAATTG 2 cut(s) 29, 321
MflI RGATCY 1 cut(s) 83
MluCI AATT 8 cut(s) 21, 29, 35, 75, 108, 183, 270, 321
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 3 cut(s) 276, 288, 319
MseI TTAA 2 cut(s) 38, 273
MslI CAYNNNNRTG 2 cut(s) 131, 342
MunI CAATTG 2 cut(s) 29, 321
MwoI GCNNNNNNNGC 2 cut(s) 11, 110
NdeII GATC 2 cut(s) 83, 216
NlaIII CATG 1 cut(s) 130
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PsiI TTATAA 1 cut(s) 189
PsuI RGATCY 1 cut(s) 83
RseI CAYNNNNRTG 2 cut(s) 131, 342
SaqAI TTAA 2 cut(s) 38, 273
Sau3AI GATC 2 cut(s) 83, 216
SchI GAGTC 1 cut(s) 62
SetI ASST 3 cut(s) 49, 164, 299
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 6
SmiMI CAYNNNNRTG 2 cut(s) 131, 342
Sse9I AATT 8 cut(s) 21, 29, 35, 75, 108, 183, 270, 321
SsiI CCGC 1 cut(s) 197
TasI AATT 8 cut(s) 21, 29, 35, 75, 108, 183, 270, 321
Tru1I TTAA 2 cut(s) 38, 273
Tru9I TTAA 2 cut(s) 38, 273
TspDTI ATGAA 2 cut(s) 57, 326
XapI RAATTY 2 cut(s) 75, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.