Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

10344958 .. 10347028

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55285

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCCAGACGTGCATACTCTTGTGAATGATTTCATTATCAAGCTGAAAAGCGGTATTAAAATCGAGGGCTCGCAGGCTACGGCGAAGCAGACGGCTGAGTTACTTCGCTCGGTGATTTCGTCGCAGCGTGTGCCCTACACGAATCAAGCTGGAGCCTTGATTGATGCTGTAAAGGCTGTTGGGGAGCAGCTGATTGCTGCAAATGTGGAGCATGCTGTGGGTAATATTGTGAGGCGCGTTTTACACATTATCAGAGAGGAGGATCTTTCTCTCACCACGCTGCTATGGCTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

98

Amino Acids

10.67

Weight (kDa)

6.83

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	237
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	270
AjiI	CACGTC	1 cut(s)	10
AluBI	AGCT	3 cut(s)	43, 149, 190
AluI	AGCT	3 cut(s)	43, 149, 190
AlwI	GGATC	1 cut(s)	270
ApeKI	GCWGC	4 cut(s)	124, 187, 197, 280
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	124, 265
BaeGI	GKGCMC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	136, 184, 199, 267
BceAI	ACGGC	2 cut(s)	96, 108
BisI	GCNGC	4 cut(s)	125, 188, 198, 281
BlsI	GCNGC	4 cut(s)	126, 189, 199, 282
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	4 cut(s)	136, 184, 199, 267
BseYI	CCCAGC	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	71, 135
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	270
BssMI	GATC	1 cut(s)	262
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	71, 75, 213
BstDEI	CTNAG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 130, 173, 286
BstNSI	RCATGY	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	4 cut(s)	136, 184, 199, 267
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BtrI	CACGTC	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	71, 75, 213
CfoI	GCGC	1 cut(s)	237
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	9 cut(s)	43, 69, 77, 95, 149, 155, 176, 190, 289
CviKI_1	RGCY	9 cut(s)	43, 69, 77, 95, 149, 155, 176, 190, 289
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	71
FaeI	CATG	1 cut(s)	215
FaiI	YATR	3 cut(s)	15, 213, 286
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	4 cut(s)	125, 188, 198, 281
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	125, 188, 198, 281
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	4 cut(s)	125, 188, 198, 281
GsaI	CCCAGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	171
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	142
HphI	GGTGA	2 cut(s)	124, 265
Hpy188I	TCNGA	1 cut(s)	254
Hpy99I	CGWCG	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	13, 200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 130, 173, 286
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	3 cut(s)	152, 184, 208
LpnPI	CCDG	4 cut(s)	18, 59, 135, 275
Lsp1109I	GCAGC	4 cut(s)	136, 184, 199, 267
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	71, 135
MnlI	CCTC	4 cut(s)	58, 225, 250, 253
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	10, 130, 173, 286
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	126, 189, 199, 282
PspFI	CCCAGC	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	4 cut(s)	125, 188, 198, 281
Sau3AI	GATC	1 cut(s)	262
SduI	GDGCHC	2 cut(s)	71, 135
SetI	ASST	4 cut(s)	12, 45, 151, 192
SfaNI	GCATC	1 cut(s)	154
SphI	GCATGC	1 cut(s)	215
SsiI	CCGC	1 cut(s)	51
SspI	AATATT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseI	GCWGC	4 cut(s)	124, 187, 197, 280
TspDTI	ATGAA	1 cut(s)	22
XceI	RCATGY	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.