Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

30847759 .. 30855220

Gene Structure 7462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0306800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGAAAGGCTCCTCGTGATTCTTCTGTCGAGCATTATATTCAGCTAGGATCCCTCTCAGTGATTGAGGCCGTGACGGATGAAATAAATTCCGGGAATGTAGACTCTGTCTTCCACATTGGAGATATAAGCTATGCCACTGGGTTTTTAGTTGAATGGGATTTTTTCCTTCACCAAATCAACCCTATTGCTTCTCGAGTTTCATACATGACAGCTATCGGGAACCATCAGAGGGACTATATAGACTCTGGATCAGTGTACATTCTTGCAGATTCAGGTGGGGAAGTTGGAGTTCCCTATGAGACTTACTTTCTAATGCCAACCCCAACAAAGGATAAACCATGGTATTCCATAGAACAAGGAAGCGTCCACATCACGATGATTTCAACAGAGCATGACTGGACCAAAAATTCTGAGCAGTATCAATGGATGAAAAAGGACATGGCTTCAGTTGATCGATCTAAAACTCCTTGGTTGATATTTATGGGGCATAGACCAATGTATACATCTGCCCCTGGATTCCTGAGTGTTGATGAGAAATTGGTTGACGAAGTTGAACCAGTACTTCTGGCAAGCAAAGTTGATCTGGCCCTGTTTGGTCATGTCCATAACTACGAGCGAACCTGCTCCATTTATAAGAGCCAATGCATGAAATTGCCTTGCAAAGATGAGGCTGGGATCGACACATATGATCACAGCAACGACAGTGCCCCAGTGCAAGCCATAATTGGAATGGCTGGCTTTTCCTTGGACAAGTTTCCCAGAGGTGTAAGTCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

260

Amino Acids

29.08

Weight (kDa)

5.01

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	17 - 205	3.3e-13	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
Acc36I	ACCTGC	1 cut(s)	632
AccI	GTMKAC	2 cut(s)	102, 503
AclWI	GGATC	4 cut(s)	45, 58, 259, 686
AcsI	RAATTY	2 cut(s)	88, 409
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	260, 564
AfiI	CCNNNNNNNGG	2 cut(s)	232, 331
AgsI	TTSAA	3 cut(s)	155, 387, 557
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	3 cut(s)	46, 132, 215
AluI	AGCT	3 cut(s)	46, 132, 215
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	4 cut(s)	45, 58, 259, 686
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	2 cut(s)	69, 588
ApoI	RAATTY	2 cut(s)	88, 409
AspS9I	GGNCC	2 cut(s)	402, 589
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	402
BaeGI	GKGCMC	1 cut(s)	712
BamHI	GGATCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	103
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	516
BclI	TGATCA	1 cut(s)	691
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	632
BmcAI	AGTACT	1 cut(s)	564
Bme1390I	CCNGG	2 cut(s)	94, 516
Bme18I	GGWCC	1 cut(s)	402
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	2 cut(s)	402, 589
BmiI	GGNNCC	3 cut(s)	12, 52, 224
BmrFI	CCNGG	2 cut(s)	94, 516
BmrI	ACTGGG	2 cut(s)	150, 707
BmuI	ACTGGG	2 cut(s)	150, 707
BpiI	GAAGAC	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	94
Bsa29I	ATCGAT	1 cut(s)	457
BsaJI	CCNNGG	4 cut(s)	341, 470, 514, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 331
Bse1I	ACTGG	4 cut(s)	145, 404, 560, 713
BseBI	CCWGG	1 cut(s)	516
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	4 cut(s)	341, 470, 514, 747
BseGI	GGATG	2 cut(s)	85, 435
BseLI	CCNNNNNNNGG	2 cut(s)	232, 331
BseMII	CTCAG	3 cut(s)	72, 405, 515
BseNI	ACTGG	4 cut(s)	145, 404, 560, 713
BseSI	GKGCMC	1 cut(s)	712
BseYI	CCCAGC	1 cut(s)	674
BshFI	GGCC	2 cut(s)	71, 590
BshVI	ATCGAT	1 cut(s)	457
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	232, 331
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	71, 590
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	7 cut(s)	50, 251, 454, 458, 583, 678, 691
Bsp19I	CCATGG	1 cut(s)	341
BspANI	GGCC	2 cut(s)	71, 590
BspCNI	CTCAG	3 cut(s)	71, 406, 516
BspDI	ATCGAT	1 cut(s)	457
BspLI	GGNNCC	3 cut(s)	12, 52, 224
BspMI	ACCTGC	1 cut(s)	632
BspPI	GGATC	4 cut(s)	45, 58, 259, 686
BsrGI	TGTACA	1 cut(s)	258
BsrI	ACTGG	4 cut(s)	145, 404, 560, 713
BssECI	CCNNGG	4 cut(s)	341, 470, 514, 747
BssMI	GATC	7 cut(s)	50, 251, 454, 458, 583, 678, 691
BssNAI	GTATAC	1 cut(s)	504
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	3 cut(s)	341, 470, 747
Bst1107I	GTATAC	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	1 cut(s)	707
BstAUI	TGTACA	1 cut(s)	258
BstC8I	GCNNGC	3 cut(s)	574, 720, 739
BstDEI	CTNAG	3 cut(s)	58, 414, 524
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	85, 435
BstKTI	GATC	7 cut(s)	53, 254, 457, 461, 586, 681, 694
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	7 cut(s)	50, 251, 454, 458, 583, 678, 691
BstNI	CCWGG	1 cut(s)	516
BstSCI	CCNGG	2 cut(s)	92, 514
BstSLI	GKGCMC	1 cut(s)	712
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BstZ17I	GTATAC	1 cut(s)	504
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	71, 590
BsuTUI	ATCGAT	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	85, 435
BtsIMutI	CAGTG	5 cut(s)	66, 138, 261, 712, 720
BveI	ACCTGC	1 cut(s)	632
Cac8I	GCNNGC	3 cut(s)	574, 720, 739
Cfr13I	GGNCC	2 cut(s)	402, 589
ClaI	ATCGAT	1 cut(s)	457
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	259, 563
CviAII	CATG	6 cut(s)	208, 342, 395, 442, 602, 649
CviQI	GTAC	2 cut(s)	259, 563
DdeI	CTNAG	3 cut(s)	58, 414, 524
DpnI	GATC	7 cut(s)	52, 253, 456, 460, 585, 680, 693
DpnII	GATC	7 cut(s)	50, 251, 454, 458, 583, 678, 691
Eco130I	CCWWGG	3 cut(s)	341, 470, 747
Eco47I	GGWCC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	3 cut(s)	341, 470, 747
EcoT22I	ATGCAT	1 cut(s)	650
ErhI	CCWWGG	3 cut(s)	341, 470, 747
FaeI	CATG	6 cut(s)	211, 345, 398, 445, 605, 652
FalI	AAGNNNNNCTT	1 cut(s)	763
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	6 cut(s)	207, 341, 394, 441, 601, 648
FauNDI	CATATG	1 cut(s)	688
FbaI	TGATCA	1 cut(s)	691
FblI	GTMKAC	2 cut(s)	102, 503
FokI	GGATG	2 cut(s)	92, 442
FspBI	CTAG	1 cut(s)	47
GsaI	CCCAGC	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	71, 590
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	355
Hin1II	CATG	6 cut(s)	211, 345, 398, 445, 605, 652
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	5 cut(s)	20, 104, 245, 272, 519
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	5 cut(s)	103, 259, 370, 504, 547
Hpy188I	TCNGA	2 cut(s)	231, 415
Hpy188III	TCNNGA	7 cut(s)	17, 195, 220, 249, 376, 523, 780
Hpy8I	GTNNAC	5 cut(s)	103, 259, 370, 504, 547
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	707
HpyCH4V	TGCA	4 cut(s)	269, 648, 663, 718
HpyF3I	CTNAG	3 cut(s)	58, 414, 524
Hsp92II	CATG	6 cut(s)	211, 345, 398, 445, 605, 652
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	7 cut(s)	50, 251, 454, 458, 583, 678, 691
LmnI	GCTCC	2 cut(s)	16, 632
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	7 cut(s)	52, 253, 456, 460, 585, 680, 693
MboI	GATC	7 cut(s)	50, 251, 454, 458, 583, 678, 691
MboII	GAAGA	2 cut(s)	15, 103
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	5 cut(s)	88, 409, 539, 653, 726
MlyI	GAGTC	2 cut(s)	98, 239
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	6 cut(s)	24, 61, 65, 225, 664, 758
Mph1103I	ATGCAT	1 cut(s)	650
MslI	CAYNNNNRTG	1 cut(s)	377
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	94, 516
MvaI	CCWGG	1 cut(s)	516
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	341
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	7 cut(s)	50, 251, 454, 458, 583, 678, 691
NlaIII	CATG	6 cut(s)	211, 345, 398, 445, 605, 652
NlaIV	GGNNCC	3 cut(s)	12, 52, 224
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	650
PaeR7I	CTCGAG	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	20, 272, 519
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	92
PleI	GAGTC	2 cut(s)	98, 239
PpsI	GAGTC	2 cut(s)	98, 239
PsiI	TTATAA	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	3 cut(s)	12, 52, 224
PspPI	GGNCC	2 cut(s)	402, 589
PsuI	RGATCY	1 cut(s)	50
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	2 cut(s)	260, 564
RsaNI	GTAC	2 cut(s)	259, 563
RseI	CAYNNNNRTG	1 cut(s)	377
Sau3AI	GATC	7 cut(s)	50, 251, 454, 458, 583, 678, 691
Sau96I	GGNCC	2 cut(s)	402, 589
ScaI	AGTACT	1 cut(s)	564
SchI	GAGTC	2 cut(s)	98, 239
ScrFI	CCNGG	2 cut(s)	94, 516
SduI	GDGCHC	1 cut(s)	712
SetI	ASST	6 cut(s)	48, 134, 217, 280, 626, 769
Sfr274I	CTCGAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	402
SlaI	CTCGAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	5 cut(s)	88, 409, 539, 653, 726
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	92, 514
StyI	CCWWGG	3 cut(s)	341, 470, 747
TaaI	ACNGT	1 cut(s)	707
TaqI	TCGA	4 cut(s)	30, 196, 457, 681
TasI	AATT	5 cut(s)	88, 409, 539, 653, 726
TatI	WGTACW	2 cut(s)	258, 562
TfiI	GAWTC	3 cut(s)	20, 272, 519
TscAI	CASTG	5 cut(s)	66, 145, 261, 712, 720
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	96, 192, 446, 665
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	5 cut(s)	66, 145, 261, 712, 720
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	2 cut(s)	88, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XhoI	CTCGAG	1 cut(s)	195
XmiI	GTMKAC	2 cut(s)	102, 503
XspI	CTAG	1 cut(s)	47
ZrmI	AGTACT	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.