RchiOBHm_Chr4g0444661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000605
Physical Location & Seq
Reverse (-)
65319635 .. 65320623
989 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41229

Sequence Viewer

Length: 909 bp
ATGGAATTGGTGTTTGAGAAGGAAAACGGCTATATGGTTATTGGCTATGATATTACTGCTGAGAAGGCTAATGTGAATATTGTTAGGGTGCATGTGAAGAAGGCCTTTGATGAAAAATGGGTGGCAGAAATTACAACGAAAATTGTCATGGTTATGACAATTGCAAGGCTTTACATCACTACCCATACCAAAGTGATCGTTGGAGTTTGTAAGACTATGCAACTTTCTAAATATGAGATCAGAAACTCAGGTGATTTATTTGCTGATGAACTTGCTAGACATTTTCCTCATATTAAGTCTACATCAAATCCTTTGAGGTATTGTTCTTCTTCAGCTATCTCAGCTATCTCAATTGTTGCTACTCTTCTTTATGTGGCATTACATATGTGTGTTACTGCTCCTGGTGTGATGAGGACTATAGAAAAAGCACAACATGATGAATTTGGTGAGAGAGCTAAGAAGAAGCAACTTGACATTGTTTTGGGATTAGATGAGAAGAAGCTATATTTAATAATATCGCTGCAATATGAAATTTCTATGGTGGGTGGAGAATTTACAAGCGATATACTTTGCTTGCAATTCTTGCTGGACTTGATAAGAAAAATGTTGCGGACTTGGACATGGGAGAATACAGAATCTTTGCAGACTCAAATGATTGTCATTAGTTTTCCTTGTTTCTACATGGTGATAATTACAATTGATGATGCTCTGGAATTCTCAAGCAGGGACAAAGAATTGATCAAGGCAAATTCTACATACGAGTGTTTGACTGGAGCAAGGGTTCATTTTCATCTACATGTTTATTGGTTTATCACTTGTTCAAAGCTCATTTTTCATGTCCAATTATATTCAAAACTACTTGGTTTGATGTGTCTTCTAGCTGAATTTCAAGAGACAAGGGGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

34.72

Weight (kDa)

7.13

Isoelectric Point (pI)

25.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 299
AciI CCGC 1 cut(s) 610
AcsI RAATTY 6 cut(s) 440, 531, 551, 713, 748, 884
AcuI CTGAAG 1 cut(s) 315
AflIII ACRYGT 1 cut(s) 796
AgsI TTSAA 3 cut(s) 822, 852, 890
AjnI CCWGG 1 cut(s) 400
AloI GAACNNNNNNTCC 2 cut(s) 765, 797
AluBI AGCT 6 cut(s) 335, 344, 455, 502, 826, 881
AluI AGCT 6 cut(s) 335, 344, 455, 502, 826, 881
Alw26I GTCTC 1 cut(s) 887
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 520
ApoI RAATTY 6 cut(s) 440, 531, 551, 713, 748, 884
AsuHPI GGTGA 3 cut(s) 263, 458, 697
BbsI GAAGAC 1 cut(s) 866
BbvI GCAGC 1 cut(s) 507
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 402
BclI TGATCA 1 cut(s) 738
BcoDI GTCTC 1 cut(s) 887
BfaI CTAG 2 cut(s) 276, 878
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 1 cut(s) 521
BlsI GCNGC 1 cut(s) 522
Bme1390I CCNGG 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 694
BpiI GAAGAC 1 cut(s) 866
BpmI CTGGAG 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 703
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bse1I ACTGG 1 cut(s) 775
BseBI CCWGG 1 cut(s) 402
BseMII CTCAG 3 cut(s) 51, 261, 354
BseNI ACTGG 1 cut(s) 775
BseXI GCAGC 1 cut(s) 507
BshFI GGCC 1 cut(s) 104
BslFI GGGAC 1 cut(s) 740
BsmAI GTCTC 1 cut(s) 887
BsmFI GGGAC 1 cut(s) 740
BsnI GGCC 1 cut(s) 104
Bsp143I GATC 3 cut(s) 195, 237, 738
BspACI CCGC 1 cut(s) 610
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 3 cut(s) 52, 260, 353
BsrI ACTGG 1 cut(s) 775
BssMI GATC 3 cut(s) 195, 237, 738
Bst2UI CCWGG 1 cut(s) 402
Bst6I CTCTTC 1 cut(s) 369
BstAPI GCANNNNNTGC 1 cut(s) 583
BstC8I GCNNGC 1 cut(s) 575
BstDEI CTNAG 4 cut(s) 60, 247, 340, 456
BstKTI GATC 3 cut(s) 198, 240, 741
BstMAI GTCTC 1 cut(s) 887
BstMBI GATC 3 cut(s) 195, 237, 738
BstMWI GCNNNNNNNGC 3 cut(s) 65, 341, 583
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 2 cut(s) 95, 800
BstSCI CCNGG 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 1 cut(s) 866
BsuRI GGCC 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 575
CviAII CATG 7 cut(s) 92, 148, 434, 621, 682, 797, 836
DdeI CTNAG 4 cut(s) 60, 247, 340, 456
DpnI GATC 3 cut(s) 197, 239, 740
DpnII GATC 3 cut(s) 195, 237, 738
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 315
EcoRI GAATTC 1 cut(s) 713
EcoRII CCWGG 1 cut(s) 400
FaeI CATG 7 cut(s) 95, 151, 437, 624, 685, 800, 839
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 1 cut(s) 740
FatI CATG 7 cut(s) 91, 147, 433, 620, 681, 796, 835
FauNDI CATATG 1 cut(s) 384
FbaI TGATCA 1 cut(s) 738
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 521
FspBI CTAG 2 cut(s) 276, 878
GluI GCNGC 1 cut(s) 521
GsuI CTGGAG 1 cut(s) 792
HaeIII GGCC 1 cut(s) 104
Hin1II CATG 7 cut(s) 95, 151, 437, 624, 685, 800, 839
HinfI GANTC 2 cut(s) 635, 646
HphI GGTGA 3 cut(s) 263, 458, 697
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 2 cut(s) 710, 890
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 3 cut(s) 13, 58, 94
HpyCH4V TGCA 6 cut(s) 91, 164, 220, 523, 577, 643
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 341, 583
HpyF3I CTNAG 4 cut(s) 60, 247, 340, 456
Hsp92II CATG 7 cut(s) 95, 151, 437, 624, 685, 800, 839
Ksp22I TGATCA 1 cut(s) 738
Kzo9I GATC 3 cut(s) 195, 237, 738
LmnI GCTCC 2 cut(s) 403, 773
LpnPI CCDG 7 cut(s) 234, 387, 414, 572, 695, 709, 756
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 1 cut(s) 694
MaeI CTAG 2 cut(s) 276, 878
MaeIII GTNAC 1 cut(s) 391
MalI GATC 3 cut(s) 197, 239, 740
MboI GATC 3 cut(s) 195, 237, 738
MboII GAAGA 7 cut(s) 109, 318, 321, 356, 472, 508, 866
MfeI CAATTG 3 cut(s) 159, 351, 696
MlyI GAGTC 1 cut(s) 640
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 3 cut(s) 297, 309, 405
MseI TTAA 3 cut(s) 294, 509, 907
MslI CAYNNNNRTG 4 cut(s) 152, 387, 760, 795
MspR9I CCNGG 1 cut(s) 402
MunI CAATTG 3 cut(s) 159, 351, 696
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 3 cut(s) 65, 341, 583
NdeI CATATG 1 cut(s) 384
NdeII GATC 3 cut(s) 195, 237, 738
NlaIII CATG 7 cut(s) 95, 151, 437, 624, 685, 800, 839
NspI RCATGY 2 cut(s) 95, 800
PceI AGGCCT 1 cut(s) 104
PciI ACATGT 1 cut(s) 796
PfeI GAWTC 1 cut(s) 635
PkrI GCNGC 1 cut(s) 522
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
PscI ACATGT 1 cut(s) 796
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
RseI CAYNNNNRTG 4 cut(s) 152, 387, 760, 795
SaqAI TTAA 3 cut(s) 294, 509, 907
SatI GCNGC 1 cut(s) 521
Sau3AI GATC 3 cut(s) 195, 237, 738
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 1 cut(s) 402
SetI ASST 8 cut(s) 253, 320, 337, 346, 457, 504, 828, 883
SfaNI GCATC 1 cut(s) 694
SfcI CTRYAG 1 cut(s) 417
SmiMI CAYNNNNRTG 4 cut(s) 152, 387, 760, 795
SmlI CTYRAG 1 cut(s) 718
SmoI CTYRAG 1 cut(s) 718
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 1 cut(s) 610
SspI AATATT 1 cut(s) 79
SspMI CTAG 2 cut(s) 276, 878
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 400
TfiI GAWTC 1 cut(s) 635
Tru1I TTAA 3 cut(s) 294, 509, 907
Tru9I TTAA 3 cut(s) 294, 509, 907
TseI GCWGC 1 cut(s) 520
TspDTI ATGAA 7 cut(s) 126, 282, 453, 543, 773, 779, 824
XapI RAATTY 6 cut(s) 440, 531, 551, 713, 748, 884
XceI RCATGY 2 cut(s) 95, 800
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 2 cut(s) 276, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.