Rmu_sc0001986.1_g000042

acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001986.1
OG0000605
Physical Location & Seq
Reverse (-)
193119 .. 195926
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001986.1_g000042.1.cds

Sequence Viewer

Length: 378 bp
atgttccagcttgacgttgaattttgtatttttaaggttgtagttggtgctcatgctgccatggccaatggtggtgttatagcacctgttggtttgaatatggttgcacttgcagcccaaaggcatgctgtcccttttgatgtgcttgctggcggttacaagggtttagttcggtgctccgcaaatcacgtccctttatctccaataggattcttggagcgagctgcaaaggcctacagcgacaggacctctgttgcaactttggcaccaaatgtcccggctatgcatgagcttcattttgcagctccaatggctagagcagttctttgtacgctaaattcacgccttagattcagctatgatatctgttcttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

125

Amino Acids

13.27

Weight (kDa)

8.84

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AciI CCGC 2 cut(s) 153, 180
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 2 cut(s) 20, 337
AfaI GTAC 1 cut(s) 331
AgsI TTSAA 2 cut(s) 20, 97
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 5 cut(s) 10, 224, 292, 305, 357
AluI AGCT 5 cut(s) 10, 224, 292, 305, 357
Alw21I GWGCWC 2 cut(s) 52, 179
AoxI GGCC 2 cut(s) 63, 231
ApeKI GCWGC 4 cut(s) 56, 113, 224, 302
ApoI RAATTY 2 cut(s) 20, 337
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 246
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 265
Bbv12I GWGCWC 2 cut(s) 52, 179
BbvI GCAGC 4 cut(s) 43, 125, 211, 314
BcnI CCSGG 1 cut(s) 278
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 4 cut(s) 57, 114, 225, 303
BlsI GCNGC 4 cut(s) 58, 115, 226, 304
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 246
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 60
BseXI GCAGC 4 cut(s) 43, 125, 211, 314
BshFI GGCC 2 cut(s) 65, 233
BshNI GGYRCC 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 52, 179
BsiSI CCGG 1 cut(s) 278
BslFI GGGAC 3 cut(s) 116, 176, 260
BsmFI GGGAC 3 cut(s) 116, 176, 260
BsnI GGCC 2 cut(s) 65, 233
Bsp1286I GDGCHC 2 cut(s) 52, 179
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 2 cut(s) 153, 180
BspANI GGCC 2 cut(s) 65, 233
BspLI GGNNCC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 60
BstC8I GCNNGC 4 cut(s) 126, 147, 151, 222
BstDEI CTNAG 2 cut(s) 347, 375
BstDSI CCRYGG 1 cut(s) 60
BstMWI GCNNNNNNNGC 6 cut(s) 56, 62, 113, 230, 263, 311
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 4 cut(s) 43, 125, 211, 314
BsuRI GGCC 2 cut(s) 65, 233
BtgI CCRYGG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 190
Cac8I GCNNGC 4 cut(s) 126, 147, 151, 222
Cfr13I GGNCC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 330
CviAII CATG 4 cut(s) 53, 61, 125, 287
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 2 cut(s) 347, 375
EaeI YGGCCR 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 233
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 246
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 56, 64, 128, 290
FaiI YATR 8 cut(s) 54, 62, 80, 101, 126, 284, 288, 360
FaqI GGGAC 3 cut(s) 116, 176, 260
FatI CATG 4 cut(s) 52, 60, 124, 286
Fnu4HI GCNGC 4 cut(s) 57, 114, 225, 303
Fsp4HI GCNGC 4 cut(s) 57, 114, 225, 303
FspBI CTAG 1 cut(s) 315
GluI GCNGC 4 cut(s) 57, 114, 225, 303
HaeIII GGCC 2 cut(s) 65, 233
HapII CCGG 1 cut(s) 278
Hin1II CATG 4 cut(s) 56, 64, 128, 290
HinfI GANTC 2 cut(s) 210, 351
HpaII CCGG 1 cut(s) 278
HpyCH4IV ACGT 2 cut(s) 15, 189
HpyCH4V TGCA 6 cut(s) 107, 113, 227, 257, 286, 302
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 62, 113, 230, 263, 311
HpyF3I CTNAG 2 cut(s) 347, 375
HpySE526I ACGT 2 cut(s) 15, 189
Hsp92II CATG 4 cut(s) 56, 64, 128, 290
LmnI GCTCC 3 cut(s) 182, 217, 310
LpnPI CCDG 5 cut(s) 20, 99, 135, 229, 291
Lsp1109I GCAGC 4 cut(s) 43, 125, 211, 314
MaeI CTAG 1 cut(s) 315
MaeII ACGT 2 cut(s) 15, 189
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 1 cut(s) 363
MhlI GDGCHC 2 cut(s) 52, 179
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 20, 337
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 1 cut(s) 259
Mox20I TGGCCA 1 cut(s) 65
Mph1103I ATGCAT 1 cut(s) 288
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 33
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 278
MwoI GCNNNNNNNGC 6 cut(s) 56, 62, 113, 230, 263, 311
NciI CCSGG 1 cut(s) 278
NcoI CCATGG 1 cut(s) 60
NlaIII CATG 4 cut(s) 56, 64, 128, 290
NlaIV GGNNCC 1 cut(s) 267
NsiI ATGCAT 1 cut(s) 288
NspI RCATGY 1 cut(s) 128
PaeI GCATGC 1 cut(s) 128
PceI AGGCCT 1 cut(s) 233
PfeI GAWTC 2 cut(s) 210, 351
PkrI GCNGC 4 cut(s) 58, 115, 226, 304
PpuMI RGGWCCY 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 246
PspPPI RGGWCCY 1 cut(s) 246
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 4 cut(s) 57, 114, 225, 303
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 2 cut(s) 52, 179
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 246
SphI GCATGC 1 cut(s) 128
Sse9I AATT 2 cut(s) 20, 337
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 2 cut(s) 153, 180
SspMI CTAG 1 cut(s) 315
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 2 cut(s) 18, 192
TasI AATT 2 cut(s) 20, 337
TfiI GAWTC 2 cut(s) 210, 351
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 4 cut(s) 56, 113, 224, 302
TspDTI ATGAA 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 2 cut(s) 20, 337
XceI RCATGY 1 cut(s) 128
XspI CTAG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.