FvH4_7g02780

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
3074203 .. 3081970
7768 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02780.t3

Sequence Viewer

Length: 1251 bp
ATGCCGGACGTGCATACTCTTGTGAATGATTTCGTTATCAAGCTGAAAAGGCGGAAAATTGAAGGCTCACAGGCCACGGCTAAGCTGACTGCTGAGTTGCTTCGCTCGGTGATTTCTTCGCAGCGTGTGCCCTACACGAATCAAGCTGGAGCCTTGATTGATGCTGTGAATGCTGTTGGGGAGCAGCTCATTGCTGCAAATCCTGTGGAGCTCGCTGTGGGTAATATTGTGAGGCGGGTTTTGCACATTATCAGGGAGGAGGATCTTTCTCTCACCACAGCTGCTATGGCTGGGTTGAACATGTCGACTGTCAGTGATGATGAAGATGATGGTGACCGCGACAACTATCCAGTTTTGTCTGCTGCTGTAGTTGCAGCAGCTGCGAGAAGCACACTGCGTCCGCCTTCCTTGCAAACCCTTCTTGAAGACATACCTGATGCAGCAGCTATCCCTCACACATCTTCATCTGGTGATTCTGAAGGAAAAAGCAAATCTGCTGATAAAAGTTCTAGAAGCCGGAAGCTGAAACATGATGTCATTGAAGCAGTCAATGAACTTATTCAGGATATTTGCACTTGCCATGAACAGATTGCTGAACAAGCAGTAGAGCACATTCACCATAATGAGGTTATATTGACTCTAGGCAGTTCAAAAACAGTTCTGGAATTTCTTTTTGCTGCAAAGGAGAAAAAAAGATCATTTCGGGTATTTGTTGCAGAGGGGGCTCCAAGGTATCAGGGGCATCTTCTTGCAAAAGAATTGGTTGCCAGAGGTTTACAAACCACGCTGATTACTGATTCTGCAGTTTTTGCTATGATATCTCGAGTGAACATGGTTATAGTGGGTGCTCATGCTGTCATGGCCAATGGTGGGGTTATAGCACCAGTTGGGTTGAATATGGTTGCACTTGCAGCCCAAAGGCATGCCGTTCCTTTTGTTGTACTTGCTGGCAGTCACAAGCTGTGCCCTTTGTATCCACACAACCCGGAAGTCTTGTTGAATGAGTTAAGATCCCCTTCTGAGCTGCTGGATTTTGGAGAATTCTCAGATTGCATGGATTTTCGAAGTGGCACTGGTTCCCCACTTCTGCATGTTGTCAATCCTACATTTGATTATGTGCCGCCAAAGCTTGTTAGTCTATTTATCACTGATACTGGAGGCCATAATCCATCATACATGTACCGGCTCATTGCAGATTATTATTCTGCTGATGATTTAGTGGTCCAACGGAGACCTGGTACAGGGAGTTGA

Protein Analysis

417

Amino Acids

44.98

Weight (kDa)

5.92

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 19 - 390 2e-68 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 305
AccII CGCG 1 cut(s) 339
AciI CCGC 5 cut(s) 52, 235, 337, 401, 1121
AclWI GGATC 2 cut(s) 270, 1005
AcoI YGGCCR 1 cut(s) 861
AcsI RAATTY 2 cut(s) 665, 1040
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 3 cut(s) 942, 1181, 1240
AfiI CCNNNNNNNGG 3 cut(s) 625, 870, 1241
AflIII ACRYGT 2 cut(s) 300, 1176
AgsI TTSAA 7 cut(s) 62, 298, 425, 542, 651, 895, 1000
AjiI CACGTC 1 cut(s) 10
AjnI CCWGG 1 cut(s) 1234
Alw21I GWGCWC 3 cut(s) 213, 612, 850
Alw26I GTCTC 1 cut(s) 1225
AlwI GGATC 2 cut(s) 270, 1005
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 822
AoxI GGCC 3 cut(s) 72, 861, 1159
ApoI RAATTY 2 cut(s) 665, 1040
Asp700I GAANNNNTTC 2 cut(s) 29, 558
AspS9I GGNCC 1 cut(s) 1222
AsuC2I CCSGG 1 cut(s) 986
AsuHPI GGTGA 5 cut(s) 121, 265, 344, 482, 608
AsuII TTCGAA 1 cut(s) 1063
AvaI CYCGRG 1 cut(s) 822
AvaII GGWCC 1 cut(s) 1222
BaeGI GKGCMC 2 cut(s) 132, 968
BalI TGGCCA 1 cut(s) 863
BanII GRGCYC 2 cut(s) 213, 727
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 3 cut(s) 213, 612, 850
BccI CCATC 2 cut(s) 323, 1177
BceAI ACGGC 2 cut(s) 93, 911
BciT130I CCWGG 1 cut(s) 1236
BciVI GTATCC 1 cut(s) 984
BcnI CCSGG 1 cut(s) 986
BcoDI GTCTC 1 cut(s) 1225
BfaI CTAG 2 cut(s) 510, 641
BfmI CTRYAG 2 cut(s) 366, 801
BfuI GTATCC 1 cut(s) 984
BlpI GCTNAGC 1 cut(s) 81
Bme1390I CCNGG 2 cut(s) 986, 1236
Bme18I GGWCC 1 cut(s) 1222
BmeT110I CYCGRG 1 cut(s) 822
BmgBI CACGTC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 1222
BmiI GGNNCC 3 cut(s) 151, 726, 1078
BmrFI CCNGG 2 cut(s) 986, 1236
BmsI GCATC 3 cut(s) 151, 427, 751
BpiI GAAGAC 1 cut(s) 432
BpmI CTGGAG 2 cut(s) 168, 1176
Bpu1102I GCTNAGC 1 cut(s) 81
Bpu14I TTCGAA 1 cut(s) 1063
BpuMI CCSGG 1 cut(s) 986
BsaI GGTCTC 1 cut(s) 1225
BsaJI CCNNGG 2 cut(s) 75, 728
BsaXI ACNNNNNCTCC 1 cut(s) 1222
Bsc4I CCNNNNNNNGG 3 cut(s) 625, 870, 1241
Bse118I RCCGGY 1 cut(s) 1182
Bse1I ACTGG 4 cut(s) 350, 884, 1078, 1159
Bse3DI GCAATG 2 cut(s) 189, 1188
BseBI CCWGG 1 cut(s) 1236
BseDI CCNNGG 2 cut(s) 75, 728
BseLI CCNNNNNNNGG 3 cut(s) 625, 870, 1241
BseMI GCAATG 2 cut(s) 189, 1188
BseMII CTCAG 3 cut(s) 84, 1011, 1059
BseNI ACTGG 4 cut(s) 350, 884, 1078, 1159
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 2 cut(s) 132, 968
BseYI CCCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 3 cut(s) 74, 863, 1161
BsiHKAI GWGCWC 3 cut(s) 213, 612, 850
BsiHKCI CYCGRG 1 cut(s) 822
BsiSI CCGG 4 cut(s) 5, 517, 986, 1183
BslI CCNNNNNNNGG 3 cut(s) 625, 870, 1241
BsmAI GTCTC 1 cut(s) 1225
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 3 cut(s) 74, 863, 1161
Bso31I GGTCTC 1 cut(s) 1225
BsoBI CYCGRG 1 cut(s) 822
Bsp119I TTCGAA 1 cut(s) 1063
Bsp1286I GDGCHC 6 cut(s) 132, 213, 612, 727, 850, 968
Bsp143I GATC 3 cut(s) 262, 695, 1010
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 5 cut(s) 52, 235, 337, 401, 1121
BspANI GGCC 3 cut(s) 74, 863, 1161
BspCNI CTCAG 3 cut(s) 85, 1012, 1058
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 3 cut(s) 151, 726, 1078
BspMAI CTGCAG 1 cut(s) 805
BspPI GGATC 2 cut(s) 270, 1005
BspT104I TTCGAA 1 cut(s) 1063
BspTNI GGTCTC 1 cut(s) 1225
BsrDI GCAATG 2 cut(s) 189, 1188
BsrFI RCCGGY 1 cut(s) 1182
BsrI ACTGG 4 cut(s) 350, 884, 1078, 1159
BssAI RCCGGY 1 cut(s) 1182
BssECI CCNNGG 2 cut(s) 75, 728
BssMI GATC 3 cut(s) 262, 695, 1010
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 1236
Bst4CI ACNGT 2 cut(s) 310, 658
BstAPI GCANNNNNTGC 3 cut(s) 127, 380, 809
BstBI TTCGAA 1 cut(s) 1063
BstC8I GCNNGC 3 cut(s) 213, 924, 949
BstDEI CTNAG 4 cut(s) 81, 93, 1020, 1045
BstDSI CCRYGG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 332
BstENI CCTNNNNNAGG 1 cut(s) 1239
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 3 cut(s) 265, 698, 1013
BstMAI GTCTC 1 cut(s) 1225
BstMBI GATC 3 cut(s) 262, 695, 1010
BstNI CCWGG 1 cut(s) 1236
BstNSI RCATGY 4 cut(s) 304, 926, 1094, 1180
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 984, 1234
BstSFI CTRYAG 2 cut(s) 366, 801
BstSLI GKGCMC 2 cut(s) 132, 968
BstUI CGCG 1 cut(s) 339
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 2 cut(s) 262, 1010
BstYI RGATCY 2 cut(s) 262, 1010
BsuI GTATCC 1 cut(s) 984
BsuRI GGCC 3 cut(s) 74, 863, 1161
BtgI CCRYGG 1 cut(s) 75
BtrI CACGTC 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 4 cut(s) 319, 392, 1071, 1146
Cac8I GCNNGC 3 cut(s) 213, 924, 949
CaiI CAGNNNCTG 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 1182
Cfr13I GGNCC 1 cut(s) 1222
CseI GACGC 1 cut(s) 386
CsiI ACCWGGT 1 cut(s) 1234
Csp6I GTAC 3 cut(s) 941, 1180, 1239
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviQI GTAC 3 cut(s) 941, 1180, 1239
DdeI CTNAG 4 cut(s) 81, 93, 1020, 1045
DpnI GATC 3 cut(s) 264, 697, 1012
DpnII GATC 3 cut(s) 262, 695, 1010
EaeI YGGCCR 1 cut(s) 861
EciI GGCGGA 2 cut(s) 67, 390
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 728
Eco24I GRGCYC 2 cut(s) 213, 727
Eco31I GGTCTC 1 cut(s) 1225
Eco32I GATATC 1 cut(s) 819
Eco47I GGWCC 1 cut(s) 1222
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 822
Eco91I GGTNACC 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 211
EcoNI CCTNNNNNAGG 1 cut(s) 1239
EcoO65I GGTNACC 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 1040
EcoRII CCWGG 1 cut(s) 1234
EcoRV GATATC 1 cut(s) 819
EcoT14I CCWWGG 1 cut(s) 728
EcoT38I GRGCYC 2 cut(s) 213, 727
ErhI CCWWGG 1 cut(s) 728
FalI AAGNNNNNCTT 2 cut(s) 1000, 1032
FauI CCCGC 1 cut(s) 228
FblI GTMKAC 1 cut(s) 305
FriOI GRGCYC 2 cut(s) 213, 727
FspBI CTAG 2 cut(s) 510, 641
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 2 cut(s) 168, 1176
HaeIII GGCC 3 cut(s) 74, 863, 1161
HapII CCGG 4 cut(s) 5, 517, 986, 1183
HgaI GACGC 1 cut(s) 386
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HindIII AAGCTT 1 cut(s) 1127
HinfI GANTC 4 cut(s) 139, 473, 637, 797
HpaII CCGG 4 cut(s) 5, 517, 986, 1183
HphI GGTGA 5 cut(s) 121, 265, 344, 482, 608
Hpy166II GTNNAC 3 cut(s) 306, 776, 829
Hpy188I TCNGA 3 cut(s) 478, 1021, 1048
Hpy188III TCNNGA 5 cut(s) 422, 510, 563, 662, 822
Hpy8I GTNNAC 3 cut(s) 306, 776, 829
HpyAV CCTTC 5 cut(s) 56, 414, 428, 473, 1026
HpyCH4III ACNGT 2 cut(s) 310, 658
HpyCH4IV ACGT 1 cut(s) 9
HpyF3I CTNAG 4 cut(s) 81, 93, 1020, 1045
HpySE526I ACGT 1 cut(s) 9
Kzo9I GATC 3 cut(s) 262, 695, 1010
LmnI GCTCC 4 cut(s) 149, 181, 208, 730
LweI GCATC 3 cut(s) 151, 427, 751
MabI ACCWGGT 1 cut(s) 1234
MaeI CTAG 2 cut(s) 510, 641
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 332, 953
MalI GATC 3 cut(s) 264, 697, 1012
MboI GATC 3 cut(s) 262, 695, 1010
MboII GAAGA 5 cut(s) 108, 335, 437, 453, 737
MflI RGATCY 2 cut(s) 262, 1010
MhlI GDGCHC 6 cut(s) 132, 213, 612, 727, 850, 968
MlsI TGGCCA 1 cut(s) 863
MluCI AATT 4 cut(s) 57, 665, 758, 1040
MluNI TGGCCA 1 cut(s) 863
MlyI GAGTC 1 cut(s) 631
MmeI TCCRAC 1 cut(s) 1249
MnlI CCTC 8 cut(s) 225, 250, 253, 462, 619, 712, 764, 1151
Mox20I TGGCCA 1 cut(s) 863
MroXI GAANNNNTTC 2 cut(s) 29, 558
MscI TGGCCA 1 cut(s) 863
MseI TTAA 1 cut(s) 1007
MslI CAYNNNNRTG 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 863
MspA1I CMGCKG 2 cut(s) 281, 380
MspI CCGG 4 cut(s) 5, 517, 986, 1183
MspR9I CCNGG 2 cut(s) 986, 1236
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 1236
MvnI CGCG 1 cut(s) 339
NciI CCSGG 1 cut(s) 986
NdeII GATC 3 cut(s) 262, 695, 1010
NlaIV GGNNCC 3 cut(s) 151, 726, 1078
NmuCI GTSAC 2 cut(s) 332, 953
NspI RCATGY 4 cut(s) 304, 926, 1094, 1180
NspV TTCGAA 1 cut(s) 1063
PaeI GCATGC 1 cut(s) 926
PaeR7I CTCGAG 1 cut(s) 822
PciI ACATGT 2 cut(s) 300, 1176
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 2 cut(s) 29, 558
PfeI GAWTC 3 cut(s) 139, 473, 797
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
PscI ACATGT 2 cut(s) 300, 1176
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 1234
PspEI GGTNACC 1 cut(s) 332
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 1234
PspN4I GGNNCC 3 cut(s) 151, 726, 1078
PspPI GGNCC 1 cut(s) 1222
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 2 cut(s) 262, 1010
PvuII CAGCTG 2 cut(s) 281, 380
RsaI GTAC 3 cut(s) 942, 1181, 1240
RsaNI GTAC 3 cut(s) 941, 1180, 1239
RseI CAYNNNNRTG 1 cut(s) 621
SacI GAGCTC 1 cut(s) 213
SalI GTCGAC 1 cut(s) 304
SaqAI TTAA 1 cut(s) 1007
Sau3AI GATC 3 cut(s) 262, 695, 1010
Sau96I GGNCC 1 cut(s) 1222
SchI GAGTC 1 cut(s) 631
ScrFI CCNGG 2 cut(s) 986, 1236
SduI GDGCHC 6 cut(s) 132, 213, 612, 727, 850, 968
SexAI ACCWGGT 1 cut(s) 1234
SfaNI GCATC 3 cut(s) 151, 427, 751
SfcI CTRYAG 2 cut(s) 366, 801
Sfr274I CTCGAG 1 cut(s) 822
SfuI TTCGAA 1 cut(s) 1063
SinI GGWCC 1 cut(s) 1222
SlaI CTCGAG 1 cut(s) 822
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 1 cut(s) 822
SmoI CTYRAG 1 cut(s) 822
SphI GCATGC 1 cut(s) 926
Sse9I AATT 4 cut(s) 57, 665, 758, 1040
SsiI CCGC 5 cut(s) 52, 235, 337, 401, 1121
SspI AATATT 1 cut(s) 226
SspMI CTAG 2 cut(s) 510, 641
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 984, 1234
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 2 cut(s) 310, 658
TaiI ACGT 1 cut(s) 12
TaqI TCGA 3 cut(s) 305, 823, 1063
TasI AATT 4 cut(s) 57, 665, 758, 1040
TatI WGTACW 1 cut(s) 940
TauI GCSGC 1 cut(s) 1123
TfiI GAWTC 3 cut(s) 139, 473, 797
Tru1I TTAA 1 cut(s) 1007
Tru9I TTAA 1 cut(s) 1007
TscAI CASTG 4 cut(s) 319, 399, 1078, 1153
TseFI GTSAC 2 cut(s) 332, 953
Tsp45I GTSAC 2 cut(s) 332, 953
TspDTI ATGAA 4 cut(s) 336, 453, 567, 597
TspGWI ACGGA 1 cut(s) 1243
TspRI CASTG 4 cut(s) 319, 399, 1078, 1153
VpaK11BI GGWCC 1 cut(s) 1222
XagI CCTNNNNNAGG 1 cut(s) 1239
XapI RAATTY 2 cut(s) 665, 1040
XbaI TCTAGA 1 cut(s) 509
XceI RCATGY 4 cut(s) 304, 926, 1094, 1180
XcmI CCANNNNNNNNNTGG 2 cut(s) 283, 1232
XhoI CTCGAG 1 cut(s) 822
XmiI GTMKAC 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 29, 558
XspI CTAG 2 cut(s) 510, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.