Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

2078794 .. 2080027

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATTGTTGGCGCTCATGCTGTCATGGCCAATGGAGGGGTTATAGCACCTGTTGGGTTGAATATGGTAGCACTTGCAGCGCAAAGGCATGCTGTCCCTTTTGTTGTACTTGCTGGCAGTCACAAGTTGTGCCCTTTGTATCCTCACAATCCTGAAGTCTTACTGAATGAGTTAAGATCTCCTTCTGAGCTGCTGGACTTTGGGGAGTTCTCGGATTGCATGGATTTTGGAAGTGGCACTGCTTCTTCGCTGCTTCAAGTTGTCAATCCTACGTTTGATTATGTGCCACCAAAGCTTGTCAGTCTATTTATCACTGATACGGGAGGGCACAATCCGTCGTACATGTACCGGCTCATCGCTGATTATTATTCTGCTGATGATTTGGTGGTCCAACGAAGGCCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

136

Amino Acids

14.59

Weight (kDa)

5.31

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	2 - 112	3.8e-24	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	3 cut(s)	108, 341, 347
AfiI	CCNNNNNNNGG	1 cut(s)	36
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	61, 257
AluBI	AGCT	2 cut(s)	190, 295
AluI	AGCT	2 cut(s)	190, 295
AoxI	GGCC	2 cut(s)	27, 398
ApeKI	GCWGC	3 cut(s)	77, 190, 250
AspLEI	GCGC	2 cut(s)	14, 82
AspS9I	GGNCC	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	2 cut(s)	134, 330
BalI	TGGCCA	1 cut(s)	29
BbvI	GCAGC	3 cut(s)	89, 177, 237
BciVI	GTATCC	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	3 cut(s)	78, 191, 251
BlsI	GCNGC	3 cut(s)	79, 192, 252
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	177
BseSI	GKGCMC	2 cut(s)	134, 330
BseXI	GCAGC	3 cut(s)	89, 177, 237
BshFI	GGCC	2 cut(s)	29, 400
BsiSI	CCGG	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	29, 400
Bsp1286I	GDGCHC	2 cut(s)	134, 330
Bsp143I	GATC	1 cut(s)	176
BspANI	GGCC	2 cut(s)	29, 400
BspCNI	CTCAG	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	348
BssMI	GATC	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	90, 115
BstDEI	CTNAG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 82
BstKTI	GATC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 77, 292
BstNSI	RCATGY	2 cut(s)	92, 346
BstSLI	GKGCMC	2 cut(s)	134, 330
BstV1I	GCAGC	3 cut(s)	89, 177, 237
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	29, 400
BtgZI	GCGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	237, 312
Cac8I	GCNNGC	2 cut(s)	90, 115
CfoI	GCGC	2 cut(s)	14, 82
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	388
Csp6I	GTAC	3 cut(s)	107, 340, 346
CviAII	CATG	5 cut(s)	17, 25, 89, 220, 343
CviJI	RGCY	5 cut(s)	29, 190, 295, 352, 400
CviKI_1	RGCY	5 cut(s)	29, 190, 295, 352, 400
CviQI	GTAC	3 cut(s)	107, 340, 346
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	174
FaeI	CATG	5 cut(s)	20, 28, 92, 223, 346
FaiI	YATR	9 cut(s)	18, 26, 44, 65, 90, 221, 282, 344, 406
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	5 cut(s)	16, 24, 88, 219, 342
Fnu4HI	GCNGC	3 cut(s)	78, 191, 251
Fsp4HI	GCNGC	3 cut(s)	78, 191, 251
GlaI	GCGC	2 cut(s)	13, 81
GluI	GCNGC	3 cut(s)	78, 191, 251
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	29, 400
HapII	CCGG	1 cut(s)	349
HhaI	GCGC	2 cut(s)	14, 82
Hin1II	CATG	5 cut(s)	20, 28, 92, 223, 346
Hin6I	GCGC	2 cut(s)	12, 80
HinP1I	GCGC	2 cut(s)	12, 80
HindIII	AAGCTT	1 cut(s)	293
HpaII	CCGG	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	187, 214
Hpy188III	TCNNGA	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	192, 390
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	77, 219
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 77, 292
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	5 cut(s)	20, 28, 92, 223, 346
HspAI	GCGC	2 cut(s)	12, 80
Kzo9I	GATC	1 cut(s)	176
LpnPI	CCDG	5 cut(s)	63, 99, 165, 179, 362
Lsp1109I	GCAGC	3 cut(s)	89, 177, 237
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	237
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	134, 330
MlsI	TGGCCA	1 cut(s)	29
MluNI	TGGCCA	1 cut(s)	29
MnlI	CCTC	3 cut(s)	29, 153, 317
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	29
MspI	CCGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	3 cut(s)	26, 77, 292
NdeII	GATC	1 cut(s)	176
NlaIII	CATG	5 cut(s)	20, 28, 92, 223, 346
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	2 cut(s)	92, 346
PaeI	GCATGC	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	400
PciI	ACATGT	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	79, 192, 252
PscI	ACATGT	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	3 cut(s)	108, 341, 347
RsaNI	GTAC	3 cut(s)	107, 340, 346
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	78, 191, 251
Sau3AI	GATC	1 cut(s)	176
Sau96I	GGNCC	1 cut(s)	388
SduI	GDGCHC	2 cut(s)	134, 330
SetI	ASST	4 cut(s)	52, 192, 275, 297
SinI	GGWCC	1 cut(s)	388
SphI	GCATGC	1 cut(s)	92
SseBI	AGGCCT	1 cut(s)	400
StuI	AGGCCT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	275
TatI	WGTACW	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	2 cut(s)	244, 319
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	3 cut(s)	77, 190, 250
Tsp45I	GTSAC	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	2 cut(s)	244, 319
VpaK11BI	GGWCC	1 cut(s)	388
XceI	RCATGY	2 cut(s)	92, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.