Rorug01G0035200

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
5972083 .. 5972487
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0035200.1

Sequence Viewer

Length: 405 bp
ATGGTGGGATTTAGACAAGGATTGCTCAAACAAATTGTGGGTGACCTTGCTTTCACCGACTCCTCACCCTTTGCGAAGCTCTTGGACTCCTGCATCCTAACCAAGTCGGCGCGTGATGCCCGTCGCGTCCACGCCCGCCTCATCAAAACCCAGTTCTCGTCGCAGGTTTTCATTCAGAACAGGCTCATCGACGCGTATGGGAAATGTGGTTCGTTCGATGATGCATGTAAGGTGTCTGATAAAATGGCTGAGAGGAACACTTTCAGCTGGAACTGCATCATTACCGCATTTACGAAGTTGGGTTTTGTTGATGAGGCTTTGCAGAGTTTTAGGTCGATGCCGGAGCCTGACCAGTGCTCATGGAACTCAGATGGTTTCGGGGTTTGCGCAGCATGGTCGCTTTGA

Protein Analysis

134

Amino Acids

14.95

Weight (kDa)

8.25

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 388
Acc36I ACCTGC 1 cut(s) 154
AccII CGCG 3 cut(s) 112, 126, 194
AciI CCGC 2 cut(s) 136, 285
AflIII ACRYGT 1 cut(s) 192
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 2 cut(s) 79, 267
AluI AGCT 2 cut(s) 79, 267
Alw21I GWGCWC 1 cut(s) 359
ApeKI GCWGC 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 112, 389
AsuHPI GGTGA 3 cut(s) 46, 53, 57
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 401
BccI CCATC 1 cut(s) 365
BcgI CGANNNNNNTGC 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 345
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 5 cut(s) 102, 106, 211, 285, 327
BmuI ACTGGG 1 cut(s) 145
Bse1I ACTGG 2 cut(s) 151, 352
BseGI GGATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 240, 381
BseNI ACTGG 2 cut(s) 151, 352
BseRI GAGGAG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 401
Bsh1236I CGCG 3 cut(s) 112, 126, 194
BsiHKAI GWGCWC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 359
BspACI CCGC 2 cut(s) 136, 285
BspCNI CTCAG 2 cut(s) 241, 380
BspFNI CGCG 3 cut(s) 112, 126, 194
BspLI GGNNCC 1 cut(s) 345
BspMI ACCTGC 1 cut(s) 154
BsrI ACTGG 2 cut(s) 151, 352
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 249, 367
BstEII GGTNACC 1 cut(s) 41
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 3 cut(s) 112, 126, 194
BstHHI GCGC 2 cut(s) 112, 389
BstMWI GCNNNNNNNGC 2 cut(s) 116, 273
BstNSI RCATGY 1 cut(s) 228
BstPI GGTNACC 1 cut(s) 41
BstUI CGCG 3 cut(s) 112, 126, 194
BstV1I GCAGC 1 cut(s) 401
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 359
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 2 cut(s) 112, 389
CseI GACGC 2 cut(s) 115, 200
CviAII CATG 3 cut(s) 225, 360, 393
CviJI RGCY 6 cut(s) 79, 184, 248, 267, 317, 346
CviKI_1 RGCY 6 cut(s) 79, 184, 248, 267, 317, 346
DdeI CTNAG 2 cut(s) 249, 367
Eco91I GGTNACC 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 226
FaeI CATG 3 cut(s) 228, 363, 396
FaiI YATR 4 cut(s) 198, 226, 361, 394
FatI CATG 3 cut(s) 224, 359, 392
FauI CCCGC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 390
FspI TGCGCA 1 cut(s) 388
GlaI GCGC 2 cut(s) 111, 388
GluI GCNGC 1 cut(s) 390
HapII CCGG 1 cut(s) 341
HgaI GACGC 2 cut(s) 115, 200
HhaI GCGC 2 cut(s) 112, 389
Hin1II CATG 3 cut(s) 228, 363, 396
Hin6I GCGC 2 cut(s) 110, 387
HinP1I GCGC 2 cut(s) 110, 387
HinfI GANTC 2 cut(s) 59, 86
HpaII CCGG 1 cut(s) 341
HphI GGTGA 3 cut(s) 46, 53, 57
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 177, 238, 370
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 3 cut(s) 126, 163, 194
HpyCH4V TGCA 4 cut(s) 93, 224, 276, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 273
HpyF3I CTNAG 2 cut(s) 249, 367
Hsp92II CATG 3 cut(s) 228, 363, 396
HspAI GCGC 2 cut(s) 110, 387
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 8 cut(s) 103, 149, 164, 166, 253, 354, 360, 365
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 5 cut(s) 102, 106, 211, 285, 327
MaeIII GTNAC 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 1 cut(s) 33
MluI ACGCGT 1 cut(s) 192
MlyI GAGTC 2 cut(s) 53, 80
MnlI CCTC 4 cut(s) 73, 149, 246, 307
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 1 cut(s) 341
MvnI CGCG 3 cut(s) 112, 126, 194
MwoI GCNNNNNNNGC 2 cut(s) 116, 273
NlaIII CATG 3 cut(s) 228, 363, 396
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 41
NsbI TGCGCA 1 cut(s) 388
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 2 cut(s) 53, 80
PpsI GAGTC 2 cut(s) 53, 80
PspEI GGTNACC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 267
SatI GCNGC 1 cut(s) 390
SchI GAGTC 2 cut(s) 53, 80
SduI GDGCHC 1 cut(s) 359
SetI ASST 6 cut(s) 48, 81, 168, 234, 269, 335
SfaNI GCATC 5 cut(s) 102, 106, 211, 285, 327
Sse9I AATT 1 cut(s) 33
SsiI CCGC 2 cut(s) 136, 285
TaqI TCGA 3 cut(s) 189, 216, 335
TasI AATT 1 cut(s) 33
TscAI CASTG 1 cut(s) 359
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 160
TspRI CASTG 1 cut(s) 359
XceI RCATGY 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.