Something about silencing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 59 |
| AccI | GTMKAC | 1 cut(s) | 50 |
| AcsI | RAATTY | 3 cut(s) | 28, 166, 276 |
| AcuI | CTGAAG | 1 cut(s) | 285 |
| AfaI | GTAC | 1 cut(s) | 6 |
| AgsI | TTSAA | 5 cut(s) | 104, 410, 541, 585, 595 |
| AleI | CACNNNNGTG | 1 cut(s) | 470 |
| AluBI | AGCT | 4 cut(s) | 151, 182, 205, 448 |
| AluI | AGCT | 4 cut(s) | 151, 182, 205, 448 |
| AoxI | GGCC | 1 cut(s) | 575 |
| ApeKI | GCWGC | 1 cut(s) | 202 |
| ApoI | RAATTY | 3 cut(s) | 28, 166, 276 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 261, 293 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AsuHPI | GGTGA | 2 cut(s) | 158, 613 |
| BaeGI | GKGCMC | 1 cut(s) | 16 |
| BbsI | GAAGAC | 1 cut(s) | 359 |
| BbvI | GCAGC | 1 cut(s) | 214 |
| BccI | CCATC | 1 cut(s) | 479 |
| BclI | TGATCA | 3 cut(s) | 154, 283, 474 |
| BfmI | CTRYAG | 1 cut(s) | 227 |
| BisI | GCNGC | 1 cut(s) | 203 |
| BlsI | GCNGC | 1 cut(s) | 204 |
| BmsI | GCATC | 1 cut(s) | 327 |
| BpiI | GAAGAC | 1 cut(s) | 359 |
| BpuEI | CTTGAG | 2 cut(s) | 134, 242 |
| BsaWI | WCCGGW | 1 cut(s) | 608 |
| Bse3DI | GCAATG | 1 cut(s) | 102 |
| BseGI | GGATG | 2 cut(s) | 184, 342 |
| BseMI | GCAATG | 1 cut(s) | 102 |
| BseSI | GKGCMC | 1 cut(s) | 16 |
| BseXI | GCAGC | 1 cut(s) | 214 |
| BsgI | GTGCAG | 1 cut(s) | 398 |
| BshFI | GGCC | 1 cut(s) | 577 |
| BsiSI | CCGG | 1 cut(s) | 609 |
| BsnI | GGCC | 1 cut(s) | 577 |
| Bsp1286I | GDGCHC | 1 cut(s) | 16 |
| Bsp143I | GATC | 3 cut(s) | 154, 283, 474 |
| BspANI | GGCC | 1 cut(s) | 577 |
| BsrDI | GCAATG | 1 cut(s) | 102 |
| BssMI | GATC | 3 cut(s) | 154, 283, 474 |
| BssNAI | GTATAC | 1 cut(s) | 51 |
| Bst1107I | GTATAC | 1 cut(s) | 51 |
| Bst4CI | ACNGT | 1 cut(s) | 231 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 578 |
| BstC8I | GCNNGC | 2 cut(s) | 381, 579 |
| BstF5I | GGATG | 2 cut(s) | 184, 342 |
| BstKTI | GATC | 3 cut(s) | 157, 286, 477 |
| BstMBI | GATC | 3 cut(s) | 154, 283, 474 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 211, 578 |
| BstSFI | CTRYAG | 1 cut(s) | 227 |
| BstSLI | GKGCMC | 1 cut(s) | 16 |
| BstV1I | GCAGC | 1 cut(s) | 214 |
| BstV2I | GAAGAC | 1 cut(s) | 359 |
| BstZ17I | GTATAC | 1 cut(s) | 51 |
| BsuRI | GGCC | 1 cut(s) | 577 |
| BtsCI | GGATG | 2 cut(s) | 184, 342 |
| BtsIMutI | CAGTG | 1 cut(s) | 236 |
| Cac8I | GCNNGC | 2 cut(s) | 381, 579 |
| Csp6I | GTAC | 1 cut(s) | 5 |
| CviAII | CATG | 3 cut(s) | 347, 530, 569 |
| CviJI | RGCY | 7 cut(s) | 132, 151, 182, 205, 448, 535, 577 |
| CviKI_1 | RGCY | 7 cut(s) | 132, 151, 182, 205, 448, 535, 577 |
| CviQI | GTAC | 1 cut(s) | 5 |
| DpnI | GATC | 3 cut(s) | 156, 285, 476 |
| DpnII | GATC | 3 cut(s) | 154, 283, 474 |
| Eco147I | AGGCCT | 1 cut(s) | 577 |
| Eco57I | CTGAAG | 1 cut(s) | 285 |
| FaeI | CATG | 3 cut(s) | 350, 533, 572 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 191, 223, 565, 597 |
| FatI | CATG | 3 cut(s) | 346, 529, 568 |
| FbaI | TGATCA | 3 cut(s) | 154, 283, 474 |
| FblI | GTMKAC | 1 cut(s) | 50 |
| Fnu4HI | GCNGC | 1 cut(s) | 203 |
| FokI | GGATG | 2 cut(s) | 171, 349 |
| Fsp4HI | GCNGC | 1 cut(s) | 203 |
| GluI | GCNGC | 1 cut(s) | 203 |
| HaeIII | GGCC | 1 cut(s) | 577 |
| HapII | CCGG | 1 cut(s) | 609 |
| Hin1II | CATG | 3 cut(s) | 350, 533, 572 |
| HindIII | AAGCTT | 1 cut(s) | 446 |
| HinfI | GANTC | 4 cut(s) | 85, 104, 389, 493 |
| HpaII | CCGG | 1 cut(s) | 609 |
| HphI | GGTGA | 2 cut(s) | 158, 613 |
| Hpy166II | GTNNAC | 1 cut(s) | 51 |
| Hpy188I | TCNGA | 2 cut(s) | 265, 521 |
| Hpy188III | TCNNGA | 3 cut(s) | 25, 113, 627 |
| Hpy8I | GTNNAC | 1 cut(s) | 51 |
| HpyAV | CCTTC | 2 cut(s) | 233, 260 |
| HpyCH4III | ACNGT | 1 cut(s) | 231 |
| HpyCH4IV | ACGT | 1 cut(s) | 453 |
| HpyCH4V | TGCA | 9 cut(s) | 46, 293, 340, 379, 420, 443, 482, 499, 572 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 211, 578 |
| HpySE526I | ACGT | 1 cut(s) | 453 |
| Hsp92II | CATG | 3 cut(s) | 350, 533, 572 |
| Ksp22I | TGATCA | 3 cut(s) | 154, 283, 474 |
| Kzo9I | GATC | 3 cut(s) | 154, 283, 474 |
| LpnPI | CCDG | 5 cut(s) | 38, 365, 453, 591, 622 |
| Lsp1109I | GCAGC | 1 cut(s) | 214 |
| LweI | GCATC | 1 cut(s) | 327 |
| MaeII | ACGT | 1 cut(s) | 453 |
| MalI | GATC | 3 cut(s) | 156, 285, 476 |
| MboI | GATC | 3 cut(s) | 154, 283, 474 |
| MboII | GAAGA | 4 cut(s) | 151, 242, 245, 364 |
| MfeI | CAATTG | 1 cut(s) | 18 |
| MhlI | GDGCHC | 1 cut(s) | 16 |
| MluCI | AATT | 6 cut(s) | 18, 28, 166, 276, 415, 427 |
| MlyI | GAGTC | 1 cut(s) | 398 |
| MnlI | CCTC | 4 cut(s) | 63, 69, 198, 327 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 1 cut(s) | 504 |
| MslI | CAYNNNNRTG | 1 cut(s) | 470 |
| MspI | CCGG | 1 cut(s) | 609 |
| MunI | CAATTG | 1 cut(s) | 18 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 211, 578 |
| NdeII | GATC | 3 cut(s) | 154, 283, 474 |
| NlaIII | CATG | 3 cut(s) | 350, 533, 572 |
| OliI | CACNNNNGTG | 1 cut(s) | 470 |
| PceI | AGGCCT | 1 cut(s) | 577 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 85, 104, 493 |
| PkrI | GCNGC | 1 cut(s) | 204 |
| PleI | GAGTC | 1 cut(s) | 397 |
| PpsI | GAGTC | 1 cut(s) | 397 |
| PsiI | TTATAA | 1 cut(s) | 59 |
| RsaI | GTAC | 1 cut(s) | 6 |
| RsaNI | GTAC | 1 cut(s) | 5 |
| RseI | CAYNNNNRTG | 1 cut(s) | 470 |
| SaqAI | TTAA | 1 cut(s) | 504 |
| SatI | GCNGC | 1 cut(s) | 203 |
| Sau3AI | GATC | 3 cut(s) | 154, 283, 474 |
| SchI | GAGTC | 1 cut(s) | 398 |
| SduI | GDGCHC | 1 cut(s) | 16 |
| SetI | ASST | 7 cut(s) | 153, 184, 207, 225, 450, 456, 626 |
| SfaNI | GCATC | 1 cut(s) | 327 |
| SfcI | CTRYAG | 1 cut(s) | 227 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 470 |
| SmlI | CTYRAG | 2 cut(s) | 113, 257 |
| SmoI | CTYRAG | 2 cut(s) | 113, 257 |
| Sse9I | AATT | 6 cut(s) | 18, 28, 166, 276, 415, 427 |
| SseBI | AGGCCT | 1 cut(s) | 577 |
| SspI | AATATT | 2 cut(s) | 243, 367 |
| StuI | AGGCCT | 1 cut(s) | 577 |
| TaaI | ACNGT | 1 cut(s) | 231 |
| TaiI | ACGT | 1 cut(s) | 456 |
| TasI | AATT | 6 cut(s) | 18, 28, 166, 276, 415, 427 |
| TfiI | GAWTC | 3 cut(s) | 85, 104, 493 |
| Tru1I | TTAA | 1 cut(s) | 504 |
| Tru9I | TTAA | 1 cut(s) | 504 |
| TscAI | CASTG | 1 cut(s) | 236 |
| TseI | GCWGC | 1 cut(s) | 202 |
| TspDTI | ATGAA | 6 cut(s) | 152, 377, 414, 522, 561, 612 |
| TspRI | CASTG | 1 cut(s) | 236 |
| XapI | RAATTY | 3 cut(s) | 28, 166, 276 |
| XmiI | GTMKAC | 1 cut(s) | 50 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |