Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

22614133 .. 22616602

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGTTCCGGCTCATCGCAGATTATTACTCTGCTGATGATTTGGTAATCCAACGAAAACCTGTTACAGGAGTTGAGTTTAGCTCATGCTTTTATATCATATATTGGGGAGTACAAAAAGCTATAATGGTAATGGTTGGATGGAGAGATGATGAAATCAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

54

Amino Acids

6.36

Weight (kDa)

4.6

Isoelectric Point (pI)

23.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	65
AluBI	AGCT	2 cut(s)	81, 119
AluI	AGCT	2 cut(s)	81, 119
BccI	CCATC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	1 cut(s)	84
CviJI	RGCY	3 cut(s)	10, 81, 119
CviKI_1	RGCY	3 cut(s)	10, 81, 119
CviQI	GTAC	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	87
FaiI	YATR	5 cut(s)	85, 93, 98, 100, 122
FatI	CATG	1 cut(s)	83
FokI	GGATG	1 cut(s)	150
HapII	CCGG	1 cut(s)	7
Hin1II	CATG	1 cut(s)	87
HpaII	CCGG	1 cut(s)	7
Hsp92II	CATG	1 cut(s)	87
LpnPI	CCDG	3 cut(s)	20, 51, 72
MaeIII	GTNAC	1 cut(s)	61
MfeI	CAATTG	1 cut(s)	157
MluCI	AATT	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	73, 115
MspI	CCGG	1 cut(s)	7
MunI	CAATTG	1 cut(s)	157
NlaIII	CATG	1 cut(s)	87
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SetI	ASST	3 cut(s)	61, 83, 121
SgeI	CNNG	4 cut(s)	19, 71, 78, 96
Sse9I	AATT	1 cut(s)	157
TasI	AATT	1 cut(s)	157
TatI	WGTACW	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.