Rh5BG052500

Belongs to the eIF-2B alpha beta delta subunits family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000605
Physical Location & Seq
Reverse (-)
4158794 .. 4159297
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG052500.1

Sequence Viewer

Length: 504 bp
ATGCATACTTTTGTGAATGATTTCCTTGACAAGCAAAAAAAATGTAAAATTGAGGGCTCGCAGGCCACAAGAAAGCAGACTGAGTTACTTAGCTTGGTGATTTCATCGCAATGTGTACTCTACACAAATCAAGCTGGAGCCTCTATTGATGTTGTAAAGGTTGTTGGGGAGCTTGTGGAACTGGCTGTGGATGATATTTTAAGGTGGGGTTTGCACATTGTCAGGAAGGAGGATCCTTCTCTCACCACAGTTGCTATGGCTGGGTTGAACTTTTCGACTGTCAGTAATGATGAAGGTGATGGTGACCGAGACAATTATCCTGTTCTATCTGTTGCTGTAGTTGTAGCAGATGCAACTACAAGAAGCACACTGTGTCCGCTTTCCTTGCAAACCCTTCTTGAAGACATACATGATGCAGCAGCTATCCCTCACACTTCTTCATCTGGGGGTGATTCTGAAGGGAAAATAAATCTGCTGATAAAAGTTCTAAAAGCCGGAAGCTGA

Protein Analysis

167

Amino Acids

17.87

Weight (kDa)

4.97

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 377
AclWI GGATC 2 cut(s) 227, 240
AcuI CTGAAG 1 cut(s) 477
AdeI CACNNNGTG 1 cut(s) 372
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 2 cut(s) 268, 401
AluBI AGCT 5 cut(s) 93, 134, 172, 422, 501
AluI AGCT 5 cut(s) 93, 134, 172, 422, 501
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 2 cut(s) 227, 240
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 416, 419
Asp700I GAANNNNTTC 1 cut(s) 20
AsuHPI GGTGA 5 cut(s) 109, 235, 308, 314, 461
BamHI GGATCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 428, 431
BccI CCATC 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 2 cut(s) 417, 420
BlsI GCNGC 2 cut(s) 418, 421
BmiI GGNNCC 2 cut(s) 139, 234
BmsI GCATC 2 cut(s) 340, 403
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 116
BseGI GGATG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 2 cut(s) 428, 431
BseYI CCCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 495
BsmAI GTCTC 1 cut(s) 303
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 377
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 139, 234
BspPI GGATC 2 cut(s) 227, 240
BsrDI GCAATG 1 cut(s) 116
BsrI ACTGG 1 cut(s) 186
BssMI GATC 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 250, 280, 372
BstC8I GCNNGC 2 cut(s) 59, 63
BstDEI CTNAG 2 cut(s) 81, 89
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstPI GGTNACC 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 428, 431
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 65
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 59, 63
Csp6I GTAC 1 cut(s) 116
CviAII CATG 1 cut(s) 410
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 81, 89
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
DraIII CACNNNGTG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 477
Eco91I GGTNACC 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 302
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 413
FaiI YATR 4 cut(s) 6, 257, 407, 411
FatI CATG 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 417, 420
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 417, 420
GluI GCNGC 2 cut(s) 417, 420
GsaI CCCAGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 495
Hin1II CATG 1 cut(s) 413
HinfI GANTC 1 cut(s) 452
HpaII CCGG 1 cut(s) 495
HphI GGTGA 5 cut(s) 109, 235, 308, 314, 461
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 2 cut(s) 223, 398
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 5 cut(s) 220, 246, 287, 404, 452
HpyCH4III ACNGT 3 cut(s) 250, 280, 372
HpyCH4V TGCA 5 cut(s) 4, 214, 353, 388, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 2 cut(s) 81, 89
Hsp92II CATG 1 cut(s) 413
Kzo9I GATC 1 cut(s) 232
LmnI GCTCC 2 cut(s) 137, 169
LpnPI CCDG 7 cut(s) 47, 120, 167, 208, 246, 333, 429
Lsp1109I GCAGC 2 cut(s) 428, 431
LweI GCATC 2 cut(s) 340, 403
MaeIII GTNAC 2 cut(s) 84, 302
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 2 cut(s) 413, 429
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 48, 313
MnlI CCTC 4 cut(s) 46, 151, 223, 438
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 109
MspI CCGG 1 cut(s) 495
MwoI GCNNNNNNNGC 1 cut(s) 385
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 2 cut(s) 139, 234
NmuCI GTSAC 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 2 cut(s) 418, 421
PspEI GGTNACC 1 cut(s) 302
PspFI CCCAGC 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 139, 234
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 2 cut(s) 417, 420
Sau3AI GATC 1 cut(s) 232
SduI GDGCHC 1 cut(s) 59
SetI ASST 8 cut(s) 95, 136, 162, 174, 206, 298, 424, 503
SfaNI GCATC 2 cut(s) 340, 403
SfcI CTRYAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 109
Sse9I AATT 2 cut(s) 48, 313
SsiI CCGC 1 cut(s) 377
TaaI ACNGT 3 cut(s) 250, 280, 372
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 1 cut(s) 321
TasI AATT 2 cut(s) 48, 313
TatI WGTACW 1 cut(s) 115
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 416, 419
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 93, 306, 429
TspRI CASTG 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.