Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

10339406 .. 10344956

Gene Structure 5551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCCTGATGCAGCAGCTATCCCTCACACTTCTTCATCTGGGGGTGATTCAGAAGGAAAAAGCACATCTGCTGATAAAAGTTCTAGGAGCCGGAAGCTGAAGCATGATGTCATTGAAGCAGTAAATGAACTTATTCAAGATATTGGCACTTGTCATGAACAGATTGCTGAGCAAGCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

60

Amino Acids

6.3

Weight (kDa)

5.1

Isoelectric Point (pI)

59.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	116, 137
AluBI	AGCT	2 cut(s)	17, 97
AluI	AGCT	2 cut(s)	17, 97
ApeKI	GCWGC	2 cut(s)	11, 14
Asp700I	GAANNNNTTC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	23, 26
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	2 cut(s)	12, 15
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	2 cut(s)	13, 16
BmiI	GGNNCC	1 cut(s)	89
Bpu1102I	GCTNAGC	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	23, 26
BsiSI	CCGG	1 cut(s)	91
Bsp1720I	GCTNAGC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	23, 26
Cac8I	GCNNGC	1 cut(s)	174
CciI	TCATGA	1 cut(s)	154
CviAII	CATG	2 cut(s)	104, 155
CviJI	RGCY	3 cut(s)	17, 90, 97
CviKI_1	RGCY	3 cut(s)	17, 90, 97
DdeI	CTNAG	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	119
FaeI	CATG	2 cut(s)	107, 158
FaiI	YATR	3 cut(s)	105, 156, 181
FatI	CATG	2 cut(s)	103, 154
Fnu4HI	GCNGC	2 cut(s)	12, 15
Fsp4HI	GCNGC	2 cut(s)	12, 15
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	12, 15
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	2 cut(s)	107, 158
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	137, 155
HpyAV	CCTTC	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	107, 158
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	3 cut(s)	18, 24, 104
Lsp1109I	GCAGC	2 cut(s)	23, 26
MaeI	CTAG	1 cut(s)	84
MboII	GAAGA	1 cut(s)	24
MnlI	CCTC	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	132
MspI	CCGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	173
NlaIII	CATG	2 cut(s)	107, 158
NlaIV	GGNNCC	1 cut(s)	89
PagI	TCATGA	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	13, 16
PspN4I	GGNNCC	1 cut(s)	89
SatI	GCNGC	2 cut(s)	12, 15
SetI	ASST	2 cut(s)	19, 99
SgeI	CNNG	8 cut(s)	17, 51, 96, 103, 116, 149, 162, 167
SspMI	CTAG	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	11, 14
TspDTI	ATGAA	3 cut(s)	24, 141, 171
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.