Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

64337134 .. 64340337

Gene Structure 3204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATATCTCAAGTGATCATGGTTATAGTTGGTGCTCGTGCTGTCATGGCCAATGGTGGTGTTATAGCACCTGTTGGTTTGAATATGGTTGCACTTGCAGCCCAAAGGCATGCTGTCCCTTTTGATGTGCTTGCTGGCGGTTACAAGAATGCTAGAATGGGGATCGTGGGATTCTCAAACAGAGTTGGTCTTAGCCGGATTGAATTGAGAGTAACACCATCTGTTGGTAGCTTATTTTCCTGGATTTCACTCTTAACACTTTCTCTGTCCAAATTATCTGTTTGCCTTACTGTTGTGCCCTCTGTATCCACACAACCCTGTAGTCTAGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

111

Amino Acids

11.54

Weight (kDa)

10.29

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	2 - 49	1.2e-09	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	224
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	82, 203
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	2 cut(s)	231, 329
AluI	AGCT	2 cut(s)	231, 329
Alw21I	GWGCWC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	50
BauI	CACGAG	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	241
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	15
BfaI	CTAG	2 cut(s)	153, 326
BfmI	CTRYAG	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	110
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	37, 300
Bsp143I	GATC	2 cut(s)	15, 162
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	170
BssMI	GATC	2 cut(s)	15, 162
BssSI	CACGAG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	292
BstC8I	GCNNGC	3 cut(s)	111, 132, 136
BstDEI	CTNAG	1 cut(s)	191
BstKTI	GATC	2 cut(s)	18, 165
BstMBI	GATC	2 cut(s)	15, 162
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 98
BstNI	CCWGG	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	319
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	110
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	111, 132, 136
CviAII	CATG	3 cut(s)	19, 46, 110
CviJI	RGCY	5 cut(s)	50, 101, 195, 231, 329
CviKI_1	RGCY	5 cut(s)	50, 101, 195, 231, 329
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	2 cut(s)	17, 164
DpnII	GATC	2 cut(s)	15, 162
EaeI	YGGCCR	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	3 cut(s)	22, 49, 113
FaiI	YATR	6 cut(s)	20, 26, 47, 65, 86, 111
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	3 cut(s)	18, 45, 109
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	153, 326
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	3 cut(s)	22, 49, 113
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	92, 98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 98
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	3 cut(s)	22, 49, 113
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	15, 162
LpnPI	CCDG	6 cut(s)	84, 120, 209, 226, 253, 331
Lsp1109I	GCAGC	1 cut(s)	110
MaeI	CTAG	2 cut(s)	153, 326
MaeIII	GTNAC	2 cut(s)	140, 211
MalI	GATC	2 cut(s)	17, 164
MboI	GATC	2 cut(s)	15, 162
MhlI	GDGCHC	2 cut(s)	37, 300
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	203, 272
MluNI	TGGCCA	1 cut(s)	50
MnlI	CCTC	1 cut(s)	310
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	241
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	47, 98
NdeII	GATC	2 cut(s)	15, 162
NlaIII	CATG	3 cut(s)	22, 49, 113
NspI	RCATGY	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	113
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	171
PflMI	CCANNNNNTGG	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	15, 162
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	2 cut(s)	37, 300
SetI	ASST	3 cut(s)	73, 233, 331
SfcI	CTRYAG	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	2 cut(s)	203, 272
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	2 cut(s)	153, 326
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	292
TasI	AATT	2 cut(s)	203, 272
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseI	GCWGC	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	224
XceI	RCATGY	1 cut(s)	113
XspI	CTAG	2 cut(s)	153, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.