Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

3029738 .. 3035643

Gene Structure 5906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1036800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGATTTCCTCATTAAGCTTAAAAAGCGGTAATAAAATTGAGGGCTCGCAGGCTACTGCAAAACAGACGGCTGAATTGATTCGGTCGGTAATTTCAGCACAGCGGGTGCCCTACACAAATCAAGCCAGAGCATTGATTGATGCTGTGAATGCTGTTGGGGAGCGGTTGATTGCTGCAAATCCTATTGAGCTTGCTGTGGGTAATATTGTGAGGCGTGTTTTGCACATTATTAGGGAGGAGGATCTTTCTCTCACTACTGCCGCTATGGCTGGGTTGAACATGACAACTGTTAGTGATGATGAAGATGATGGTGACCATGACAACCATTCGACTCTATCTGCCGCTGTTGTTGCGGCTGCTGCAAGAAGCACACTGCGTCCACCATCTTTGCAAACACTGCTTGAGGACATTCCTGATGTAGCAGCTGTTCCTCATACTTCTTCATCTGGGGGTGATTCTGAAGAAAAAACCAAATCTGCTGATAAAAGTTCAAGAAGTCGGAAGCTGAAGCATGATGTTATTGAAGCAGTCAATGAACTTATACAAGATATTGGCACTTGCCATGAACAGATTGCTGAGCAAGCAGTAGAGCACATTCACCATAATGAGGTTATATTAACTTTAGGTAGTTCAAGAACTGTACTGGAATTTCTTTGTGCTGCAAAGGAGAAAAAAAGATCGTTTCGGGTTTTTGTTGCTGAGGGAGCTCCAAGGTATCAGGGGCATCTTCTTGCTAAAGAACTAGTTGCAAGAGGTTTACAGACCACGCTGATCACTGATTCAGCAGTTTTTGCCATGATATCCCGAGTCAACATGGTTATTGTTGGCGCTCATGCTGTCATGGCCAATGGAGGGGTTATAGCACCTGTCGGGTTGAATATGGTAGCACTTGCAGCGCAAAGGCATGCTGTCCCTTTTGTTGTACTTGCTGGCAGTCACAAGTTGTGCCCTTTGTATCCTCACAATCCCGAAGTGTTACTGAATGAGTTAAGATCTCCTTCTGAGCTGCTGGACTTTGGGGAGTTCTCGGATTGCATGGATTTTGGAAGTGGCACTGCTTCTTCTCTGCTTCAAGTTGTCAATCCTACATTTGATTATGTGCCACCAAAGCTTGTCAATCTATTTATCACTGATACGGGAGGGCACAATCCGTCGTACATGTACCGGCTTATCGCAGATTATTATTCTGCTGATGATTTGGTGGTCCAACGAAGGCCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

408

Amino Acids

43.85

Weight (kDa)

5.75

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	12 - 384	1.8e-68	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	163
AciI	CCGC	6 cut(s)	27, 103, 163, 261, 342, 353
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	843
AcsI	RAATTY	1 cut(s)	647
AcuI	CTGAAG	2 cut(s)	480, 527
AfaI	GTAC	4 cut(s)	642, 924, 1157, 1163
AfiI	CCNNNNNNNGG	2 cut(s)	607, 852
AflIII	ACRYGT	1 cut(s)	1158
AgsI	TTSAA	6 cut(s)	277, 492, 524, 633, 877, 1073
AhlI	ACTAGT	1 cut(s)	742
AluBI	AGCT	7 cut(s)	18, 190, 425, 505, 707, 1006, 1111
AluI	AGCT	7 cut(s)	18, 190, 425, 505, 707, 1006, 1111
Alw21I	GWGCWC	2 cut(s)	594, 709
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	2 cut(s)	843, 1214
ApeKI	GCWGC	7 cut(s)	173, 356, 359, 422, 659, 893, 1006
ApoI	RAATTY	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	830, 898
AspS9I	GGNCC	1 cut(s)	1204
AsuHPI	GGTGA	3 cut(s)	323, 464, 590
AvaI	CYCGRG	1 cut(s)	804
AvaII	GGWCC	1 cut(s)	1204
BaeGI	GKGCMC	3 cut(s)	111, 950, 1146
BalI	TGGCCA	1 cut(s)	845
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	2 cut(s)	47, 709
Bbv12I	GWGCWC	2 cut(s)	594, 709
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	7 cut(s)	160, 343, 346, 434, 646, 905, 993
BccI	CCATC	2 cut(s)	302, 391
BceAI	ACGGC	1 cut(s)	84
BciVI	GTATCC	1 cut(s)	966
BclI	TGATCA	1 cut(s)	771
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	1 cut(s)	743
BfoI	RGCGCY	1 cut(s)	831
BfuI	GTATCC	1 cut(s)	966
BglI	GCCNNNNNGGC	1 cut(s)	266
BglII	AGATCT	1 cut(s)	992
BlpI	GCTNAGC	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	1204
BmeT110I	CYCGRG	1 cut(s)	804
BmgT120I	GGNCC	1 cut(s)	1204
BmiI	GGNNCC	1 cut(s)	108
BmsI	GCATC	2 cut(s)	130, 733
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 852
Bse118I	RCCGGY	1 cut(s)	1164
Bse1I	ACTGG	1 cut(s)	648
BseDI	CCNNGG	1 cut(s)	710
BseLI	CCNNNNNNNGG	2 cut(s)	607, 852
BseMII	CTCAG	3 cut(s)	567, 690, 993
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	3 cut(s)	111, 950, 1146
BseXI	GCAGC	7 cut(s)	160, 343, 346, 434, 646, 905, 993
BseYI	CCCAGC	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	845, 1216
BshNI	GGYRCC	1 cut(s)	106
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	594, 709
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	1 cut(s)	1165
BslFI	GGGAC	1 cut(s)	896
BslI	CCNNNNNNNGG	2 cut(s)	607, 852
BsmFI	GGGAC	1 cut(s)	896
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	845, 1216
BsoBI	CYCGRG	1 cut(s)	804
Bsp1286I	GDGCHC	6 cut(s)	47, 111, 594, 709, 950, 1146
Bsp143I	GATC	4 cut(s)	241, 677, 771, 992
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	6 cut(s)	27, 103, 163, 261, 342, 353
BspANI	GGCC	2 cut(s)	845, 1216
BspCNI	CTCAG	3 cut(s)	568, 691, 994
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	1164
BsrI	ACTGG	1 cut(s)	648
BssAI	RCCGGY	1 cut(s)	1164
BssECI	CCNNGG	1 cut(s)	710
BssMI	GATC	4 cut(s)	241, 677, 771, 992
BssT1I	CCWWGG	1 cut(s)	710
Bst4CI	ACNGT	2 cut(s)	289, 640
BstAPI	GCANNNNNTGC	2 cut(s)	397, 791
BstC8I	GCNNGC	6 cut(s)	47, 51, 192, 582, 906, 931
BstDEI	CTNAG	3 cut(s)	576, 699, 1002
BstEII	GGTNACC	1 cut(s)	311
BstH2I	RGCGCY	1 cut(s)	831
BstHHI	GCGC	2 cut(s)	830, 898
BstKTI	GATC	4 cut(s)	244, 680, 774, 995
BstMBI	GATC	4 cut(s)	241, 677, 771, 992
BstMCI	CGRYCG	1 cut(s)	86
BstNSI	RCATGY	2 cut(s)	908, 1162
BstPI	GGTNACC	1 cut(s)	311
BstSLI	GKGCMC	3 cut(s)	111, 950, 1146
BstV1I	GCAGC	7 cut(s)	160, 343, 346, 434, 646, 905, 993
BstX2I	RGATCY	2 cut(s)	241, 992
BstYI	RGATCY	2 cut(s)	241, 992
BsuI	GTATCC	1 cut(s)	966
BsuRI	GGCC	2 cut(s)	845, 1216
BtsI	GCAGTG	3 cut(s)	371, 395, 1053
BtsIMutI	CAGTG	5 cut(s)	371, 395, 774, 1053, 1128
Cac8I	GCNNGC	6 cut(s)	47, 51, 192, 582, 906, 931
CfoI	GCGC	2 cut(s)	830, 898
Cfr10I	RCCGGY	1 cut(s)	1164
Cfr13I	GGNCC	1 cut(s)	1204
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	4 cut(s)	641, 923, 1156, 1162
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviQI	GTAC	4 cut(s)	641, 923, 1156, 1162
DdeI	CTNAG	3 cut(s)	576, 699, 1002
DpnI	GATC	4 cut(s)	243, 679, 773, 994
DpnII	GATC	4 cut(s)	241, 677, 771, 992
EaeI	YGGCCR	1 cut(s)	843
Ecl136II	GAGCTC	1 cut(s)	707
Eco130I	CCWWGG	1 cut(s)	710
Eco147I	AGGCCT	1 cut(s)	1216
Eco24I	GRGCYC	2 cut(s)	47, 709
Eco32I	GATATC	1 cut(s)	801
Eco47I	GGWCC	1 cut(s)	1204
Eco53kI	GAGCTC	1 cut(s)	707
Eco57I	CTGAAG	2 cut(s)	480, 527
Eco88I	CYCGRG	1 cut(s)	804
Eco91I	GGTNACC	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	707
EcoO65I	GGTNACC	1 cut(s)	311
EcoRV	GATATC	1 cut(s)	801
EcoT14I	CCWWGG	1 cut(s)	710
EcoT38I	GRGCYC	2 cut(s)	47, 709
ErhI	CCWWGG	1 cut(s)	710
FalI	AAGNNNNNCTT	2 cut(s)	982, 1014
FaqI	GGGAC	1 cut(s)	896
FauI	CCCGC	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	771
FriOI	GRGCYC	2 cut(s)	47, 709
FspBI	CTAG	1 cut(s)	743
GlaI	GCGC	2 cut(s)	829, 897
GsaI	CCCAGC	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	831
HaeIII	GGCC	2 cut(s)	845, 1216
HapII	CCGG	1 cut(s)	1165
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	830, 898
Hin6I	GCGC	2 cut(s)	828, 896
HinP1I	GCGC	2 cut(s)	828, 896
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	2 cut(s)	16, 1109
HinfI	GANTC	5 cut(s)	79, 331, 455, 779, 807
HpaII	CCGG	1 cut(s)	1165
HphI	GGTGA	3 cut(s)	323, 464, 590
Hpy166II	GTNNAC	3 cut(s)	380, 758, 811
Hpy188I	TCNGA	4 cut(s)	460, 501, 1003, 1030
Hpy188III	TCNNGA	5 cut(s)	413, 492, 633, 804, 968
Hpy8I	GTNNAC	3 cut(s)	380, 758, 811
Hpy99I	CGWCG	1 cut(s)	1156
HpyAV	CCTTC	2 cut(s)	1008, 1206
HpyCH4III	ACNGT	2 cut(s)	289, 640
HpyCH4V	TGCA	9 cut(s)	59, 176, 223, 362, 391, 662, 749, 893, 1035
HpyF3I	CTNAG	3 cut(s)	576, 699, 1002
HspAI	GCGC	2 cut(s)	828, 896
Ksp22I	TGATCA	1 cut(s)	771
Kzo9I	GATC	4 cut(s)	241, 677, 771, 992
LmnI	GCTCC	3 cut(s)	160, 704, 712
Lsp1109I	GCAGC	7 cut(s)	160, 343, 346, 434, 646, 905, 993
LweI	GCATC	2 cut(s)	130, 733
MaeI	CTAG	1 cut(s)	743
MaeIII	GTNAC	3 cut(s)	311, 935, 975
MalI	GATC	4 cut(s)	243, 679, 773, 994
MbiI	CCGCTC	1 cut(s)	163
MboI	GATC	4 cut(s)	241, 677, 771, 992
MboII	GAAGA	5 cut(s)	314, 432, 473, 719, 1053
MflI	RGATCY	2 cut(s)	241, 992
MhlI	GDGCHC	6 cut(s)	47, 111, 594, 709, 950, 1146
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	4 cut(s)	36, 74, 90, 647
MluNI	TGGCCA	1 cut(s)	845
MlyI	GAGTC	2 cut(s)	325, 816
MmeI	TCCRAC	1 cut(s)	479
Mox20I	TGGCCA	1 cut(s)	845
MroXI	GAANNNNTTC	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	4 cut(s)	14, 20, 617, 989
MslI	CAYNNNNRTG	1 cut(s)	603
Msp20I	TGGCCA	1 cut(s)	845
MspA1I	CMGCKG	3 cut(s)	103, 344, 425
MspI	CCGG	1 cut(s)	1165
Mva1269I	GAATGC	1 cut(s)	154
NdeII	GATC	4 cut(s)	241, 677, 771, 992
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	311, 935
NspI	RCATGY	2 cut(s)	908, 1162
PaeI	GCATGC	1 cut(s)	908
PceI	AGGCCT	1 cut(s)	1216
PciI	ACATGT	1 cut(s)	1158
PctI	GAATGC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	3 cut(s)	79, 455, 779
PleI	GAGTC	2 cut(s)	325, 815
PpsI	GAGTC	2 cut(s)	325, 815
PscI	ACATGT	1 cut(s)	1158
Psp124BI	GAGCTC	1 cut(s)	709
PspEI	GGTNACC	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	1204
PsrI	GAACNNNNNNTAC	2 cut(s)	411, 443
PsuI	RGATCY	2 cut(s)	241, 992
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	4 cut(s)	642, 924, 1157, 1163
RsaNI	GTAC	4 cut(s)	641, 923, 1156, 1162
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	709
SaqAI	TTAA	4 cut(s)	14, 20, 617, 989
Sau3AI	GATC	4 cut(s)	241, 677, 771, 992
Sau96I	GGNCC	1 cut(s)	1204
SchI	GAGTC	2 cut(s)	325, 816
SduI	GDGCHC	6 cut(s)	47, 111, 594, 709, 950, 1146
SfaNI	GCATC	2 cut(s)	130, 733
SinI	GGWCC	1 cut(s)	1204
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SpeI	ACTAGT	1 cut(s)	742
SphI	GCATGC	1 cut(s)	908
Sse9I	AATT	4 cut(s)	36, 74, 90, 647
SseBI	AGGCCT	1 cut(s)	1216
SsiI	CCGC	6 cut(s)	27, 103, 163, 261, 342, 353
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	743
SstI	GAGCTC	1 cut(s)	709
StuI	AGGCCT	1 cut(s)	1216
StyI	CCWWGG	1 cut(s)	710
TaaI	ACNGT	2 cut(s)	289, 640
TaqI	TCGA	1 cut(s)	329
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	4 cut(s)	36, 74, 90, 647
TatI	WGTACW	2 cut(s)	640, 922
TauI	GCSGC	3 cut(s)	263, 344, 356
TfiI	GAWTC	3 cut(s)	79, 455, 779
Tru1I	TTAA	4 cut(s)	14, 20, 617, 989
Tru9I	TTAA	4 cut(s)	14, 20, 617, 989
TscAI	CASTG	5 cut(s)	378, 402, 781, 1060, 1135
TseFI	GTSAC	2 cut(s)	311, 935
TseI	GCWGC	7 cut(s)	173, 356, 359, 422, 659, 893, 1006
Tsp45I	GTSAC	2 cut(s)	311, 935
TspDTI	ATGAA	4 cut(s)	315, 432, 549, 579
TspGWI	ACGGA	1 cut(s)	1140
TspRI	CASTG	5 cut(s)	378, 402, 781, 1060, 1135
VpaK11BI	GGWCC	1 cut(s)	1204
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	2 cut(s)	908, 1162
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.