RLG00000009689

Belongs to the eIF-2B alpha beta delta subunits family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000605
Physical Location & Seq
Reverse (-)
56439579 .. 56442732
3154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009689

Sequence Viewer

Length: 1272 bp
ATGGAGGAAGTTCAAGCTCTCGTCAATGAACTCGCCACCAAGCTCCGGAAACGGAAGGTGGAGGGTTCACGAGAGACTGCTCGGCTGACGGCGGAGTTGTTACGGACGGTAATATCCCAGCAGAGGGTGACTTCAGCCGCCCTTGTTGAGGTCGTCAGAGATGTTGGTCAGCAGCTTATTGCTGCTAACCCTGTTGAGCTTGCTGTTGGGAACATTGTGAGGCGTGTTCTGCGCATCATTAGGGATGGGGATCTTTCACCGGAAGTTGGAGGATTGACTTTAGTCTCCCAGGGTGATGATGGAGATATTGTTGAGGAAGATGACAAACCATTTCTATTATCTGATGCTATTTCCCAAACAATTCTCCATCCACCTTCCTTGGTTGCACAGCTTGAAAGCAAACCCAACTTGGTTTGCCACTTTGAGGGAAAAGGCAAGTTATTTAAGAATGTTTTGTTCTTAAATAACAGCGTAACTGGATTCTTGTACATACAACAAACTACAAGAATCCAGTTACACTCAGCAGATACAACTCCGAGTAGCTGGCAATTTAAGCACCAGATCATTGAGGGAGTTAATGATCTCATTGAGGATATAAATACTTGCCATGAACTGATCGCAGACCAGGCATTGGAGCTTATACATCAAAATGAGGTGATACTAACCTTAGGTCACTCGAGGACTGTCAAGAAGTTCCTCTATGCTGCAAAGGAGAAGAAAAGATCTTTCCAGGTCTATGTGGCCGAGGGTGCTCCTAAGCATTTGGGGCATGTGCTTGCAAACGAGTTAACTGAAAAGCATTTGCAAACAACCGTCATTCCTGACTCTTCAGTGTTTGCCATGATTTCAAGAGTTAACATGGTCATAGTCGGGGTTCATGCTTTGATGGCCAATGGTGGGGTCATAGCCCCTGTTGGGATGAATATGGTTGCACTTGCCGCAAAAAGGCATGCTGTTCCATTTGTTGTGGTTGGTGGCACTCATAAGTTATGTCCACTGTTTCCTAACAATCCAGAGGTTTTGCTGAACGATATGAGATGTCCATCTGAGCTATTATCTTTTGGGGACTTCTCAGATTGCATGGATTTTAGTGTTGGCAGTGGAGCTCCTCTTTTGCATGTTGTTAATCCTGCATTTGACTATGTGCCACCCGAGCTAGTCAGTCTTTTTGTTACTGAAACAGGGGGCTATCATCCATCATACATCTATAGGCTCATTTCTGATTATTACTCTGCTGACGATATAGTTCTGCAACAAAAACCTGCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
IF-2B

Protein Analysis

424

Amino Acids

46.48

Weight (kDa)

5.76

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 174 - 399 2.8e-55 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 631
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 3 cut(s) 92, 138, 939
AclWI GGATC 1 cut(s) 258
AcoI YGGCCR 2 cut(s) 741, 888
AcuI CTGAAG 2 cut(s) 117, 813
AfaI GTAC 1 cut(s) 488
AgsI TTSAA 3 cut(s) 14, 395, 849
AjnI CCWGG 3 cut(s) 288, 624, 729
Alw21I GWGCWC 2 cut(s) 754, 1108
Alw26I GTCTC 2 cut(s) 68, 289
AlwI GGATC 1 cut(s) 258
Ama87I CYCGRG 2 cut(s) 676, 1151
Aor13HI TCCGGA 1 cut(s) 45
AoxI GGCC 2 cut(s) 741, 888
ApeKI GCWGC 3 cut(s) 172, 182, 704
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 4 cut(s) 139, 249, 305, 667
AvaI CYCGRG 2 cut(s) 676, 1151
AxyI CCTNAGG 1 cut(s) 667
BalI TGGCCA 1 cut(s) 890
BanII GRGCYC 1 cut(s) 1108
BauI CACGAG 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 754, 1108
BbvI GCAGC 3 cut(s) 169, 184, 691
BccI CCATC 6 cut(s) 239, 293, 375, 880, 1051, 1204
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 3 cut(s) 290, 626, 731
BcoDI GTCTC 2 cut(s) 68, 289
BfaI CTAG 1 cut(s) 1157
BfmI CTRYAG 1 cut(s) 1207
BglII AGATCT 1 cut(s) 722
BisI GCNGC 5 cut(s) 138, 173, 183, 705, 939
BlsI GCNGC 5 cut(s) 139, 174, 184, 706, 940
Bme1390I CCNGG 3 cut(s) 290, 626, 731
BmeT110I CYCGRG 2 cut(s) 676, 1151
BmrFI CCNGG 3 cut(s) 290, 626, 731
BmsI GCATC 2 cut(s) 243, 334
BoxI GACNNNNGTC 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 756
BsaBI GATNNNNATC 2 cut(s) 249, 1042
BsaJI CCNNGG 4 cut(s) 288, 289, 378, 744
BsaWI WCCGGW 2 cut(s) 45, 259
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bse1I ACTGG 2 cut(s) 481, 511
Bse21I CCTNAGG 1 cut(s) 667
Bse8I GATNNNNATC 2 cut(s) 249, 1042
BseAI TCCGGA 1 cut(s) 45
BseBI CCWGG 3 cut(s) 290, 626, 731
BseDI CCNNGG 4 cut(s) 288, 289, 378, 744
BseGI GGATG 4 cut(s) 250, 367, 924, 1192
BseJI GATNNNNATC 2 cut(s) 249, 1042
BseMII CTCAG 3 cut(s) 534, 1038, 1086
BseNI ACTGG 2 cut(s) 481, 511
BseRI GAGGAG 1 cut(s) 1098
BseXI GCAGC 3 cut(s) 169, 184, 691
BseYI CCCAGC 1 cut(s) 117
BshFI GGCC 2 cut(s) 743, 890
BsiHKAI GWGCWC 2 cut(s) 754, 1108
BsiHKCI CYCGRG 2 cut(s) 676, 1151
BsiSI CCGG 2 cut(s) 46, 260
BslFI GGGAC 1 cut(s) 1079
BsmAI GTCTC 2 cut(s) 68, 289
BsmFI GGGAC 1 cut(s) 1079
BsnI GGCC 2 cut(s) 743, 890
BsoBI CYCGRG 2 cut(s) 676, 1151
Bsp1286I GDGCHC 2 cut(s) 754, 1108
Bsp13I TCCGGA 1 cut(s) 45
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 5 cut(s) 250, 561, 580, 615, 722
BspACI CCGC 3 cut(s) 92, 138, 939
BspANI GGCC 2 cut(s) 743, 890
BspCNI CTCAG 3 cut(s) 533, 1039, 1085
BspEI TCCGGA 1 cut(s) 45
BspPI GGATC 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 2 cut(s) 481, 511
BssECI CCNNGG 4 cut(s) 288, 289, 378, 744
BssMI GATC 5 cut(s) 250, 561, 580, 615, 722
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 3 cut(s) 290, 626, 731
Bst4CI ACNGT 4 cut(s) 109, 685, 814, 999
Bst6I CTCTTC 1 cut(s) 832
BstAUI TGTACA 1 cut(s) 486
BstC8I GCNNGC 4 cut(s) 201, 545, 777, 951
BstDEI CTNAG 5 cut(s) 520, 667, 756, 1047, 1072
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 4 cut(s) 250, 367, 924, 1192
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 5 cut(s) 253, 564, 583, 618, 725
BstMAI GTCTC 2 cut(s) 68, 289
BstMBI GATC 5 cut(s) 250, 561, 580, 615, 722
BstMWI GCNNNNNNNGC 8 cut(s) 229, 553, 626, 749, 766, 887, 938, 1153
BstNI CCWGG 3 cut(s) 290, 626, 731
BstNSI RCATGY 3 cut(s) 773, 953, 1121
BstPAI GACNNNNGTC 1 cut(s) 281
BstSCI CCNGG 3 cut(s) 288, 624, 729
BstSFI CTRYAG 1 cut(s) 1207
BstV1I GCAGC 3 cut(s) 169, 184, 691
BstX2I RGATCY 2 cut(s) 250, 722
BstYI RGATCY 2 cut(s) 250, 722
Bsu36I CCTNAGG 1 cut(s) 667
BsuRI GGCC 2 cut(s) 743, 890
BtsCI GGATG 4 cut(s) 250, 367, 924, 1192
BtsI GCAGTG 1 cut(s) 1105
BtsIMutI CAGTG 3 cut(s) 837, 995, 1105
Cac8I GCNNGC 4 cut(s) 201, 545, 777, 951
CfoI GCGC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 487
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 8 cut(s) 608, 770, 841, 859, 878, 950, 1081, 1118
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 5 cut(s) 520, 667, 756, 1047, 1072
DpnI GATC 5 cut(s) 252, 563, 582, 617, 724
DpnII GATC 5 cut(s) 250, 561, 580, 615, 722
EaeI YGGCCR 2 cut(s) 741, 888
Eam1104I CTCTTC 1 cut(s) 832
EarI CTCTTC 1 cut(s) 832
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 1106
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 1108
Eco53kI GAGCTC 1 cut(s) 1106
Eco57I CTGAAG 2 cut(s) 117, 813
Eco81I CCTNAGG 1 cut(s) 667
Eco88I CYCGRG 2 cut(s) 676, 1151
EcoICRI GAGCTC 1 cut(s) 1106
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoRII CCWGG 3 cut(s) 288, 624, 729
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 1108
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 8 cut(s) 611, 773, 844, 862, 881, 953, 1084, 1121
FaqI GGGAC 1 cut(s) 1079
FatI CATG 8 cut(s) 607, 769, 840, 858, 877, 949, 1080, 1117
Fnu4HI GCNGC 5 cut(s) 138, 173, 183, 705, 939
FokI GGATG 4 cut(s) 257, 354, 931, 1179
FriOI GRGCYC 1 cut(s) 1108
Fsp4HI GCNGC 5 cut(s) 138, 173, 183, 705, 939
FspBI CTAG 1 cut(s) 1157
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 1 cut(s) 233
GluI GCNGC 5 cut(s) 138, 173, 183, 705, 939
GsaI CCCAGC 1 cut(s) 121
HaeIII GGCC 2 cut(s) 743, 890
HapII CCGG 2 cut(s) 46, 260
HhaI GCGC 1 cut(s) 234
Hin1II CATG 8 cut(s) 611, 773, 844, 862, 881, 953, 1084, 1121
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 2 cut(s) 789, 856
HindII GTYRAC 2 cut(s) 789, 856
HinfI GANTC 3 cut(s) 480, 507, 824
HpaI GTTAAC 2 cut(s) 789, 856
HpaII CCGG 2 cut(s) 46, 260
HphI GGTGA 4 cut(s) 139, 249, 305, 667
Hpy166II GTNNAC 4 cut(s) 68, 789, 856, 995
Hpy188I TCNGA 6 cut(s) 158, 343, 537, 1048, 1075, 1222
Hpy188III TCNNGA 7 cut(s) 46, 69, 688, 821, 849, 1013, 1269
Hpy8I GTNNAC 4 cut(s) 68, 789, 856, 995
HpyAV CCTTC 2 cut(s) 49, 384
HpyCH4III ACNGT 4 cut(s) 109, 685, 814, 999
HpyCH4V TGCA 9 cut(s) 386, 707, 779, 805, 932, 1080, 1117, 1133, 1252
HpyF10VI GCNNNNNNNGC 8 cut(s) 229, 553, 626, 749, 766, 887, 938, 1153
HpyF3I CTNAG 5 cut(s) 520, 667, 756, 1047, 1072
Hsp92II CATG 8 cut(s) 611, 773, 844, 862, 881, 953, 1084, 1121
HspAI GCGC 1 cut(s) 232
Kpn2I TCCGGA 1 cut(s) 45
KspAI GTTAAC 2 cut(s) 789, 856
Kzo9I GATC 5 cut(s) 250, 561, 580, 615, 722
LmnI GCTCC 5 cut(s) 48, 634, 757, 1103, 1111
Lsp1109I GCAGC 3 cut(s) 169, 184, 691
LweI GCATC 2 cut(s) 243, 334
MaeI CTAG 1 cut(s) 1157
MaeIII GTNAC 6 cut(s) 99, 127, 472, 513, 671, 1171
MalI GATC 5 cut(s) 252, 563, 582, 617, 724
MboI GATC 5 cut(s) 250, 561, 580, 615, 722
MboII GAAGA 3 cut(s) 329, 727, 819
MflI RGATCY 2 cut(s) 250, 722
MhlI GDGCHC 2 cut(s) 754, 1108
MlsI TGGCCA 1 cut(s) 890
MluCI AATT 2 cut(s) 360, 548
MluNI TGGCCA 1 cut(s) 890
MlyI GAGTC 1 cut(s) 818
MmeI TCCRAC 1 cut(s) 247
Mox20I TGGCCA 1 cut(s) 890
MroI TCCGGA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 890
MseI TTAA 7 cut(s) 444, 461, 552, 576, 788, 855, 1125
MslI CAYNNNNRTG 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 890
MspI CCGG 2 cut(s) 46, 260
MspR9I CCNGG 3 cut(s) 290, 626, 731
MvaI CCWGG 3 cut(s) 290, 626, 731
MwoI GCNNNNNNNGC 8 cut(s) 229, 553, 626, 749, 766, 887, 938, 1153
NdeII GATC 5 cut(s) 250, 561, 580, 615, 722
NlaIII CATG 8 cut(s) 611, 773, 844, 862, 881, 953, 1084, 1121
NmeAIII GCCGAG 2 cut(s) 61, 769
NmuCI GTSAC 2 cut(s) 127, 671
NsbI TGCGCA 1 cut(s) 233
NspI RCATGY 3 cut(s) 773, 953, 1121
PaeI GCATGC 1 cut(s) 953
PaeR7I CTCGAG 1 cut(s) 676
PasI CCCWGGG 1 cut(s) 289
PfeI GAWTC 2 cut(s) 480, 507
PflMI CCANNNNNTGG 1 cut(s) 631
PkrI GCNGC 5 cut(s) 139, 174, 184, 706, 940
PleI GAGTC 1 cut(s) 818
PpsI GAGTC 1 cut(s) 818
PshAI GACNNNNGTC 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 1108
Psp6I CCWGG 3 cut(s) 288, 624, 729
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 3 cut(s) 288, 624, 729
PspXI VCTCGAGB 1 cut(s) 676
PsuI RGATCY 2 cut(s) 250, 722
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 648
SacI GAGCTC 1 cut(s) 1108
SaqAI TTAA 7 cut(s) 444, 461, 552, 576, 788, 855, 1125
SatI GCNGC 5 cut(s) 138, 173, 183, 705, 939
Sau3AI GATC 5 cut(s) 250, 561, 580, 615, 722
SchI GAGTC 1 cut(s) 818
ScrFI CCNGG 3 cut(s) 290, 626, 731
SduI GDGCHC 2 cut(s) 754, 1108
SfaNI GCATC 2 cut(s) 243, 334
SfcI CTRYAG 1 cut(s) 1207
Sfr274I CTCGAG 1 cut(s) 676
SlaI CTCGAG 1 cut(s) 676
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 676
SmoI CTYRAG 1 cut(s) 676
SphI GCATGC 1 cut(s) 953
Sse9I AATT 2 cut(s) 360, 548
SsiI CCGC 3 cut(s) 92, 138, 939
SspMI CTAG 1 cut(s) 1157
SstI GAGCTC 1 cut(s) 1108
StyD4I CCNGG 3 cut(s) 288, 624, 729
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 4 cut(s) 109, 685, 814, 999
TaqI TCGA 1 cut(s) 677
TasI AATT 2 cut(s) 360, 548
TatI WGTACW 1 cut(s) 486
TauI GCSGC 2 cut(s) 140, 941
TfiI GAWTC 2 cut(s) 480, 507
Tru1I TTAA 7 cut(s) 444, 461, 552, 576, 788, 855, 1125
Tru9I TTAA 7 cut(s) 444, 461, 552, 576, 788, 855, 1125
TscAI CASTG 3 cut(s) 837, 1002, 1105
TseFI GTSAC 2 cut(s) 127, 671
TseI GCWGC 3 cut(s) 172, 182, 704
Tsp45I GTSAC 2 cut(s) 127, 671
TspDTI ATGAA 4 cut(s) 42, 624, 866, 935
TspGWI ACGGA 2 cut(s) 67, 118
TspRI CASTG 3 cut(s) 837, 1002, 1105
Van91I CCANNNNNTGG 1 cut(s) 631
XagI CCTNNNNNAGG 1 cut(s) 146
XceI RCATGY 3 cut(s) 773, 953, 1121
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 676
XspI CTAG 1 cut(s) 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.