Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Forward (+)

27738081 .. 27753007

Gene Structure 14927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00188200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTTCTGATAATGCTTCTAGTCTGATGAAAAGCTCCCTATATCAATCGAGCCCATCTGCTTGCCTGGCATATATGCCTGGTTCTCATGAAGGAATTAAGGGAGACTTCGTCTCTCTCCTGCTAGATGATTTCCAAGATAACCCGCAGTTTATCACGTTTGAGTCTCGGCATTGGTGGCTGTCCAGTTTCGCCGGCGAGAGTAGGAACGGTTGCAGGAAGATTCGATGCGGTTACTCGCATGAAGTAACTGACCCTATTTTGCGGGAGTGGACGAATGTTGCTGGTTACACAGCAGTTGCCAAAGAAGCCACCGAGGCCTCTCCATTTCCATTGCTTCAGTCTCCCCAAGCTAAAACTCTCCCCCTTTACGGTATGACAAATCAGCAACTTATCGATCATGGACACCAAATGATGGATAAGACTGATCAAGCGATTGATAGAACACAAAGGATCCGATCATTCAGCTCATGTAGGTGTGAAGCATTCACGGTGTTGATGAAACGGAGTCCGGCAAGACCATTTTCCGGTCGACGACGAGATAAAACGGCTCTACTGGAGGCTATAACCAATCCATCATTCATGTTCCGGCTCATCGCAGATTATTACTCTGCTGATGATTTGGTAATCCAACGAAAACCTGTTACAGGAGTTGAGTTTAGCTCATGCTTTTATATCATATATTGGGAGTGTTTGCTAGTGTTGCATTGGCATGGGAGAAGGATGCAACTAAAATCAGTTGCAAATAGCGTCACTGCCTCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

255

Amino Acids

28.96

Weight (kDa)

8.66

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	532
AciI	CCGC	3 cut(s)	146, 231, 265
AclWI	GGATC	2 cut(s)	448, 461
AcuI	CTGAAG	1 cut(s)	323
AfiI	CCNNNNNNNGG	4 cut(s)	371, 415, 527, 647
AjnI	CCWGG	2 cut(s)	66, 79
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AluBI	AGCT	4 cut(s)	36, 353, 468, 663
AluI	AGCT	4 cut(s)	36, 353, 468, 663
Alw26I	GTCTC	4 cut(s)	99, 118, 171, 348
AlwI	GGATC	2 cut(s)	448, 461
AoxI	GGCC	1 cut(s)	318
BamHI	GGATCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	56
BccI	CCATC	3 cut(s)	64, 409, 583
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	2 cut(s)	68, 81
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	4 cut(s)	99, 118, 171, 348
BfaI	CTAG	3 cut(s)	21, 125, 698
BglI	GCCNNNNNGGC	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	68, 81
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	2 cut(s)	68, 81
BmsI	GCATC	2 cut(s)	218, 714
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpmI	CTGGAG	1 cut(s)	578
Bsa29I	ATCGAT	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	4 cut(s)	371, 415, 527, 647
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	186, 561
Bse3DI	GCAATG	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	68, 81
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	729
BseLI	CCNNNNNNNGG	4 cut(s)	371, 415, 527, 647
BseMI	GCAATG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	186, 561
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	1 cut(s)	320
BshVI	ATCGAT	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	532
BsiSI	CCGG	4 cut(s)	195, 512, 528, 589
BslI	CCNNNNNNNGG	4 cut(s)	371, 415, 527, 647
BsmAI	GTCTC	4 cut(s)	99, 118, 171, 348
BsmBI	CGTCTC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	4 cut(s)	397, 427, 453, 458
BspACI	CCGC	3 cut(s)	146, 231, 265
BspANI	GGCC	1 cut(s)	320
BspDI	ATCGAT	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	448, 461
BsrDI	GCAATG	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	186, 561
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	4 cut(s)	397, 427, 453, 458
Bst2UI	CCWGG	2 cut(s)	68, 81
Bst4CI	ACNGT	3 cut(s)	212, 374, 493
BstC8I	GCNNGC	2 cut(s)	64, 196
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	1 cut(s)	729
BstKTI	GATC	4 cut(s)	400, 430, 456, 461
BstMAI	GTCTC	4 cut(s)	99, 118, 171, 348
BstMBI	GATC	4 cut(s)	397, 427, 453, 458
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 178, 308, 317, 703
BstNI	CCWGG	2 cut(s)	68, 81
BstSCI	CCNGG	2 cut(s)	66, 79
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	320
BsuTUI	ATCGAT	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	729
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	1 cut(s)	753
Cac8I	GCNNGC	2 cut(s)	64, 196
CciI	TCATGA	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	194
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	1 cut(s)	739
CviAII	CATG	7 cut(s)	89, 242, 401, 471, 583, 666, 713
DpnI	GATC	4 cut(s)	399, 429, 455, 460
DpnII	GATC	4 cut(s)	397, 427, 453, 458
Eco147I	AGGCCT	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoRII	CCWGG	2 cut(s)	66, 79
EcoT38I	GRGCYC	1 cut(s)	56
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	7 cut(s)	92, 245, 404, 474, 586, 669, 716
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	7 cut(s)	88, 241, 400, 470, 582, 665, 712
FauI	CCCGC	2 cut(s)	153, 258
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	532
FokI	GGATG	1 cut(s)	736
FriOI	GRGCYC	1 cut(s)	56
FspBI	CTAG	3 cut(s)	21, 125, 698
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	4 cut(s)	195, 512, 528, 589
HgaI	GACGC	1 cut(s)	739
Hin1II	CATG	7 cut(s)	92, 245, 404, 474, 586, 669, 716
HincII	GTYRAC	1 cut(s)	533
HindII	GTYRAC	1 cut(s)	533
HinfI	GANTC	3 cut(s)	164, 223, 508
HpaII	CCGG	4 cut(s)	195, 512, 528, 589
Hpy166II	GTNNAC	2 cut(s)	273, 533
Hpy188I	TCNGA	3 cut(s)	10, 27, 458
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	2 cut(s)	273, 533
Hpy99I	CGWCG	2 cut(s)	537, 540
HpyAV	CCTTC	2 cut(s)	86, 714
HpyCH4III	ACNGT	3 cut(s)	212, 374, 493
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	4 cut(s)	216, 706, 727, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 178, 308, 317, 703
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	7 cut(s)	92, 245, 404, 474, 586, 669, 716
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	397, 427, 453, 458
LmnI	GCTCC	1 cut(s)	41
LweI	GCATC	2 cut(s)	218, 714
MaeI	CTAG	3 cut(s)	21, 125, 698
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	5 cut(s)	233, 247, 287, 643, 751
MalI	GATC	4 cut(s)	399, 429, 455, 460
MboI	GATC	4 cut(s)	397, 427, 453, 458
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	2 cut(s)	173, 517
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	3 cut(s)	310, 331, 553
MreI	CGCCGGCG	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	194
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	2 cut(s)	475, 711
MspI	CCGG	4 cut(s)	195, 512, 528, 589
MspR9I	CCNGG	2 cut(s)	68, 81
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	68, 81
MwoI	GCNNNNNNNGC	5 cut(s)	68, 178, 308, 317, 703
NaeI	GCCGGC	1 cut(s)	196
NdeII	GATC	4 cut(s)	397, 427, 453, 458
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	7 cut(s)	92, 245, 404, 474, 586, 669, 716
NlaIV	GGNNCC	1 cut(s)	455
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	751
PagI	TCATGA	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	320
PctI	GAATGC	1 cut(s)	485
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	223
PflFI	GACNNNGTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	415
PleI	GAGTC	2 cut(s)	172, 516
PpsI	GAGTC	2 cut(s)	172, 516
Psp6I	CCWGG	2 cut(s)	66, 79
PspGI	CCWGG	2 cut(s)	66, 79
PspN4I	GGNNCC	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	453
PsyI	GACNNNGTC	1 cut(s)	110
RseI	CAYNNNNRTG	2 cut(s)	475, 711
SalI	GTCGAC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	4 cut(s)	397, 427, 453, 458
SchI	GAGTC	2 cut(s)	173, 517
ScrFI	CCNGG	2 cut(s)	68, 81
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	7 cut(s)	38, 161, 355, 470, 479, 643, 665
SfaNI	GCATC	2 cut(s)	218, 714
SgrAI	CRCCGGYG	1 cut(s)	194
SmiMI	CAYNNNNRTG	2 cut(s)	475, 711
Sse9I	AATT	1 cut(s)	96
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	3 cut(s)	146, 231, 265
SspMI	CTAG	3 cut(s)	21, 125, 698
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	66, 79
TaaI	ACNGT	3 cut(s)	212, 374, 493
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	4 cut(s)	50, 226, 396, 532
TasI	AATT	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	760
TseFI	GTSAC	1 cut(s)	751
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	5 cut(s)	44, 105, 258, 515, 571
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	1 cut(s)	760
Tth111I	GACNNNGTC	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	415
XagI	CCTNNNNNAGG	1 cut(s)	645
XmiI	GTMKAC	1 cut(s)	532
XspI	CTAG	3 cut(s)	21, 125, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.