Rmu_sc0001168.1_g000019

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001168.1
Physical Location & Seq
Reverse (-)
108466 .. 108833
368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001168.1_g000019.1.cds

Sequence Viewer

Length: 237 bp
atgccagacgtgcatactcttgtgaatgatttcattatcaagctgaaaaagcgaaaaatcaagggctcgcaggctacggcgaagcagactgctgagttacttcgctcggtgatttcatcgcagcgtgtgccctacacgaatcaagctggagcactgattgatgctgtaaaggctgttggggagcagctgattgctgcaaatcctgtgggtaggtgtgcggaaatgttatataagtag

Protein Analysis

78

Amino Acids

8.51

Weight (kDa)

9.84

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 218
AjiI CACGTC 1 cut(s) 10
AluBI AGCT 3 cut(s) 43, 146, 187
AluI AGCT 3 cut(s) 43, 146, 187
Alw21I GWGCWC 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 121, 184, 194
Asp700I GAANNNNTTC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 133, 181, 196
BceAI ACGGC 1 cut(s) 93
BisI GCNGC 3 cut(s) 122, 185, 195
BlsI GCNGC 3 cut(s) 123, 186, 196
BmgBI CACGTC 1 cut(s) 10
BmsI GCATC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 3 cut(s) 133, 181, 196
BsiHKAI GWGCWC 1 cut(s) 154
Bsp1286I GDGCHC 3 cut(s) 68, 132, 154
BspACI CCGC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 68, 72
BstDEI CTNAG 1 cut(s) 93
BstMWI GCNNNNNNNGC 4 cut(s) 10, 49, 127, 170
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 133, 181, 196
BtgZI GCGATG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 68, 72
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviJI RGCY 6 cut(s) 43, 66, 74, 146, 173, 187
CviKI_1 RGCY 6 cut(s) 43, 66, 74, 146, 173, 187
DdeI CTNAG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 68
FaiI YATR 3 cut(s) 15, 229, 231
Fnu4HI GCNGC 3 cut(s) 122, 185, 195
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 122, 185, 195
GluI GCNGC 3 cut(s) 122, 185, 195
GsuI CTGGAG 1 cut(s) 168
HinfI GANTC 1 cut(s) 139
HphI GGTGA 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 13, 197
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 49, 127, 170
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 9
LmnI GCTCC 2 cut(s) 149, 181
LpnPI CCDG 4 cut(s) 18, 56, 132, 216
Lsp1109I GCAGC 3 cut(s) 133, 181, 196
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 96
MhlI GDGCHC 3 cut(s) 68, 132, 154
MroXI GAANNNNTTC 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 187
MwoI GCNNNNNNNGC 4 cut(s) 10, 49, 127, 170
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 3 cut(s) 123, 186, 196
PvuII CAGCTG 1 cut(s) 187
SatI GCNGC 3 cut(s) 122, 185, 195
SduI GDGCHC 3 cut(s) 68, 132, 154
SetI ASST 5 cut(s) 12, 45, 148, 189, 215
SfaNI GCATC 1 cut(s) 151
SsiI CCGC 1 cut(s) 218
TaiI ACGT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 1 cut(s) 159
TseI GCWGC 3 cut(s) 121, 184, 194
TspDTI ATGAA 2 cut(s) 22, 105
TspRI CASTG 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.