Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

2324603 .. 2327659

Gene Structure 3057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCCAGACGTTCAATCAACGGTGGTGGAATTTGTTAACAAGCTCAGAAAGCGTAAGATTGAGGGCTCACAGGCTACAGCCAAATACACCGTAGAGCTACTTAGGTCAGTAATTTCGCATCAGCGGGTGCCTCACGCTAACCAAGCTGCCGCTCTTATCGATGCTGTGAAAGCTGTTGGTGAGCAATTGATCGCTGCTAATCCTGTTGAGCTTGCGGTGGGAAATGTAGTTAGACGGGTTTTGCATATTATAAGGGAGGAAGATCTTTCTCTAACTACAGCAGCTATGGGTGGTTTGGACTTGTTGGATGCAAGTGATGATGATGATGTAGACAATTGCAAAGGAATTGGGTTTCCTGCAATGTCTGCAGCAGTTGTTGCAGCTGCAGCTAGGAGTACATTACGCCCTCCATCTTTGCAAACGCTTCTCGAGGGCACTCCTGAATCTGCAACTGTTCCATACACATCTTCATCTGGTGCTGATTCCGAAAGCAAAACTGCCGATAAAAGTTCGTTAACTCGGAAGCTGAAGCATGATGTTATCGAAGGAGTGAATCAACTTATTCAAGAGATTGCTGGTTGTCATGAGCAGATCGCTGAACAAGCTATAGAGCATATACATCAAAATGAGGTGATCCTAACCCTGGGTAGCTCAAGAACAGTGCTTGAGTTTCTGTGTGCTGCAAAGGAGAAAAAAAGATCTTTTCGTGTATTTGTTGCCGAAGGTGCTCCAAGATATCAGGGCCATCTATTAGCAAAAGAATTGGTAGCTAGAGGTTTGCAGACAACTGTGATCACCGACTCTGCAGTGTTTGCTATGATATCTCGAGTGAATATGGTTATAATTGGAGCTCATGCAGTGATGGCTAATGGTGGAGTTATAGGGCCAGTTGGTGTCAACATGGCTGCTCTTGCAGCACAAAAGCACGCAGTCCCATTCGTGGTTCTTGCTGGTAGTCACAAGTTGTGTCCCCTCTATCCTCACAATCCGGAAGTATTACTAAATGAGCTGAGATCTCCATCTGAACTGTTGGATTTTGGTGAATTCTCTGATTGCCTGGATTTTGGAGCAGGTTCCGGGTCTCTTCAAGTTGTCAACCCAACATTCGATTATGTCCCACCAAACCTTGTTAGTCTCTTTATAACAGACACGGGAGGACACAATCCATCCTACATGTACCGTCTTATTGCGGACTACTACTCTGCTGATGATTTGGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

407

Amino Acids

43.6

Weight (kDa)

5.54

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	19 - 389	2.7e-68	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	251, 842, 1142
Acc36I	ACCTGC	1 cut(s)	1061
AccB1I	GGYRCC	1 cut(s)	127
AccBSI	CCGCTC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	330
AccIII	TCCGGA	1 cut(s)	988
AciI	CCGC	4 cut(s)	124, 150, 215, 1190
AclWI	GGATC	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	29, 1043
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	2 cut(s)	397, 1178
AfiI	CCNNNNNNNGG	2 cut(s)	643, 940
AflIII	ACRYGT	1 cut(s)	1173
AgsI	TTSAA	3 cut(s)	14, 566, 1088
AjnI	CCWGG	2 cut(s)	642, 1056
Alw21I	GWGCWC	2 cut(s)	730, 853
Alw26I	GTCTC	2 cut(s)	1086, 1139
AlwI	GGATC	1 cut(s)	628
Ama87I	CYCGRG	2 cut(s)	428, 825
Aor13HI	TCCGGA	1 cut(s)	988
AoxI	GGCC	2 cut(s)	742, 884
ApoI	RAATTY	2 cut(s)	29, 1043
AspS9I	GGNCC	2 cut(s)	742, 884
AsuC2I	CCSGG	1 cut(s)	1078
AsuHPI	GGTGA	4 cut(s)	191, 643, 787, 1052
AvaI	CYCGRG	2 cut(s)	428, 825
BaeGI	GKGCMC	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	68, 853
Bbv12I	GWGCWC	2 cut(s)	730, 853
BccI	CCATC	5 cut(s)	418, 753, 856, 1027, 1174
BciT130I	CCWGG	2 cut(s)	644, 1058
BclI	TGATCA	1 cut(s)	792
BcnI	CCSGG	1 cut(s)	1078
BcoDI	GTCTC	2 cut(s)	1086, 1139
BfaI	CTAG	2 cut(s)	390, 771
BfmI	CTRYAG	6 cut(s)	75, 276, 366, 384, 606, 804
BfuAI	ACCTGC	1 cut(s)	1061
BglII	AGATCT	3 cut(s)	262, 698, 1013
Bme1390I	CCNGG	3 cut(s)	644, 1058, 1078
BmeT110I	CYCGRG	2 cut(s)	428, 825
BmgT120I	GGNCC	2 cut(s)	742, 884
BmiI	GGNNCC	2 cut(s)	129, 1075
BmrFI	CCNGG	3 cut(s)	644, 1058, 1078
BmsI	GCATC	3 cut(s)	127, 151, 298
BpuEI	CTTGAG	2 cut(s)	637, 686
BpuMI	CCSGG	1 cut(s)	1078
Bsa29I	ATCGAT	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	1018
BsaI	GGTCTC	1 cut(s)	1086
BsaJI	CCNNGG	2 cut(s)	642, 643
BsaWI	WCCGGW	1 cut(s)	988
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 940
Bse1I	ACTGG	1 cut(s)	887
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	1018
BseAI	TCCGGA	1 cut(s)	988
BseBI	CCWGG	2 cut(s)	644, 1058
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	642, 643
BseGI	GGATG	2 cut(s)	313, 1166
BseJI	GATNNNNATC	1 cut(s)	1018
BseLI	CCNNNNNNNGG	2 cut(s)	643, 940
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	58, 1001
BseNI	ACTGG	1 cut(s)	887
BseSI	GKGCMC	1 cut(s)	437
BshFI	GGCC	2 cut(s)	744, 886
BshNI	GGYRCC	1 cut(s)	127
BshVI	ATCGAT	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	730, 853
BsiHKCI	CYCGRG	2 cut(s)	428, 825
BsiSI	CCGG	2 cut(s)	989, 1077
BslFI	GGGAC	3 cut(s)	917, 954, 1100
BslI	CCNNNNNNNGG	2 cut(s)	643, 940
BsmAI	GTCTC	2 cut(s)	1086, 1139
BsmFI	GGGAC	3 cut(s)	917, 954, 1100
BsnI	GGCC	2 cut(s)	744, 886
Bso31I	GGTCTC	1 cut(s)	1086
BsoBI	CYCGRG	2 cut(s)	428, 825
Bsp1286I	GDGCHC	4 cut(s)	68, 437, 730, 853
Bsp13I	TCCGGA	1 cut(s)	988
Bsp143I	GATC	7 cut(s)	189, 262, 591, 633, 698, 792, 1013
BspACI	CCGC	4 cut(s)	124, 150, 215, 1190
BspANI	GGCC	2 cut(s)	744, 886
BspCNI	CTCAG	2 cut(s)	57, 1002
BspDI	ATCGAT	1 cut(s)	159
BspEI	TCCGGA	1 cut(s)	988
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	129, 1075
BspMAI	CTGCAG	3 cut(s)	370, 388, 808
BspMI	ACCTGC	1 cut(s)	1061
BspPI	GGATC	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	1086
BsrBI	CCGCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	887
BssECI	CCNNGG	2 cut(s)	642, 643
BssMI	GATC	7 cut(s)	189, 262, 591, 633, 698, 792, 1013
Bst2UI	CCWGG	2 cut(s)	644, 1058
Bst4CI	ACNGT	7 cut(s)	22, 91, 454, 661, 790, 1029, 1181
Bst6I	CTCTTC	1 cut(s)	1089
BstAPI	GCANNNNNTGC	3 cut(s)	365, 377, 812
BstC8I	GCNNGC	2 cut(s)	213, 927
BstDEI	CTNAG	3 cut(s)	44, 101, 1010
BstF5I	GGATG	2 cut(s)	313, 1166
BstKTI	GATC	7 cut(s)	192, 265, 594, 636, 701, 795, 1016
BstMAI	GTCTC	2 cut(s)	1086, 1139
BstMBI	GATC	7 cut(s)	189, 262, 591, 633, 698, 792, 1013
BstNI	CCWGG	2 cut(s)	644, 1058
BstNSI	RCATGY	1 cut(s)	1177
BstSCI	CCNGG	3 cut(s)	642, 1056, 1076
BstSFI	CTRYAG	6 cut(s)	75, 276, 366, 384, 606, 804
BstSLI	GKGCMC	1 cut(s)	437
BstX2I	RGATCY	3 cut(s)	262, 698, 1013
BstYI	RGATCY	3 cut(s)	262, 698, 1013
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	744, 886
BsuTUI	ATCGAT	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	313, 1166
BtsI	GCAGTG	2 cut(s)	813, 864
BtsIMutI	CAGTG	3 cut(s)	666, 813, 864
BveI	ACCTGC	1 cut(s)	1061
Cac8I	GCNNGC	2 cut(s)	213, 927
CciI	TCATGA	1 cut(s)	583
Cfr13I	GGNCC	2 cut(s)	742, 884
ClaI	ATCGAT	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	396, 1177
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	5 cut(s)	533, 584, 854, 901, 1174
CviQI	GTAC	2 cut(s)	396, 1177
DdeI	CTNAG	3 cut(s)	44, 101, 1010
DpnI	GATC	7 cut(s)	191, 264, 593, 635, 700, 794, 1015
DpnII	GATC	7 cut(s)	189, 262, 591, 633, 698, 792, 1013
Eam1104I	CTCTTC	1 cut(s)	1089
EarI	CTCTTC	1 cut(s)	1089
Ecl136II	GAGCTC	1 cut(s)	851
Eco24I	GRGCYC	2 cut(s)	68, 853
Eco31I	GGTCTC	1 cut(s)	1086
Eco32I	GATATC	2 cut(s)	737, 822
Eco53kI	GAGCTC	1 cut(s)	851
Eco57I	CTGAAG	1 cut(s)	548
Eco88I	CYCGRG	2 cut(s)	428, 825
EcoICRI	GAGCTC	1 cut(s)	851
EcoRI	GAATTC	1 cut(s)	1043
EcoRII	CCWGG	2 cut(s)	642, 1056
EcoRV	GATATC	2 cut(s)	737, 822
EcoT38I	GRGCYC	2 cut(s)	68, 853
FaeI	CATG	5 cut(s)	536, 587, 857, 904, 1177
FaqI	GGGAC	3 cut(s)	917, 954, 1100
FatI	CATG	5 cut(s)	532, 583, 853, 900, 1173
FauI	CCCGC	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	792
FblI	GTMKAC	1 cut(s)	330
FokI	GGATG	2 cut(s)	320, 1153
FriOI	GRGCYC	2 cut(s)	68, 853
FspBI	CTAG	2 cut(s)	390, 771
HaeIII	GGCC	2 cut(s)	744, 886
HapII	CCGG	2 cut(s)	989, 1077
Hin1II	CATG	5 cut(s)	536, 587, 857, 904, 1177
HincII	GTYRAC	4 cut(s)	37, 516, 898, 1096
HindII	GTYRAC	4 cut(s)	37, 516, 898, 1096
HinfI	GANTC	4 cut(s)	443, 482, 553, 800
HpaI	GTTAAC	2 cut(s)	37, 516
HpaII	CCGG	2 cut(s)	989, 1077
HphI	GGTGA	4 cut(s)	191, 643, 787, 1052
Hpy166II	GTNNAC	5 cut(s)	37, 331, 516, 898, 1096
Hpy188I	TCNGA	5 cut(s)	47, 487, 522, 1024, 1051
Hpy188III	TCNNGA	7 cut(s)	428, 440, 566, 584, 654, 825, 989
Hpy8I	GTNNAC	5 cut(s)	37, 331, 516, 898, 1096
HpyAV	CCTTC	2 cut(s)	539, 716
HpyCH4III	ACNGT	7 cut(s)	22, 91, 454, 661, 790, 1029, 1181
HpyCH4IV	ACGT	1 cut(s)	9
HpyF3I	CTNAG	3 cut(s)	44, 101, 1010
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	536, 587, 857, 904, 1177
Kpn2I	TCCGGA	1 cut(s)	988
Ksp22I	TGATCA	1 cut(s)	792
KspAI	GTTAAC	2 cut(s)	37, 516
Kzo9I	GATC	7 cut(s)	189, 262, 591, 633, 698, 792, 1013
LmnI	GCTCC	3 cut(s)	733, 848, 1067
LweI	GCATC	3 cut(s)	127, 151, 298
MaeI	CTAG	2 cut(s)	390, 771
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	956
MalI	GATC	7 cut(s)	191, 264, 593, 635, 700, 794, 1015
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	7 cut(s)	189, 262, 591, 633, 698, 792, 1013
MboII	GAAGA	3 cut(s)	272, 459, 1076
MfeI	CAATTG	2 cut(s)	185, 334
MflI	RGATCY	3 cut(s)	262, 698, 1013
MhlI	GDGCHC	4 cut(s)	68, 437, 730, 853
MluCI	AATT	8 cut(s)	29, 111, 185, 334, 345, 761, 843, 1043
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	2 cut(s)	285, 1011
MroI	TCCGGA	1 cut(s)	988
MseI	TTAA	2 cut(s)	36, 515
MslI	CAYNNNNRTG	1 cut(s)	624
MspA1I	CMGCKG	2 cut(s)	124, 383
MspI	CCGG	2 cut(s)	989, 1077
MspR9I	CCNGG	3 cut(s)	644, 1058, 1078
MunI	CAATTG	2 cut(s)	185, 334
MvaI	CCWGG	2 cut(s)	644, 1058
NciI	CCSGG	1 cut(s)	1078
NdeII	GATC	7 cut(s)	189, 262, 591, 633, 698, 792, 1013
NlaIII	CATG	5 cut(s)	536, 587, 857, 904, 1177
NlaIV	GGNNCC	2 cut(s)	129, 1075
NmuCI	GTSAC	1 cut(s)	956
NspI	RCATGY	1 cut(s)	1177
PaeR7I	CTCGAG	2 cut(s)	428, 825
PagI	TCATGA	1 cut(s)	583
PasI	CCCWGGG	1 cut(s)	643
PciI	ACATGT	1 cut(s)	1173
PfeI	GAWTC	3 cut(s)	443, 482, 553
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
PscI	ACATGT	1 cut(s)	1173
PsiI	TTATAA	3 cut(s)	251, 842, 1142
Psp124BI	GAGCTC	1 cut(s)	853
Psp6I	CCWGG	2 cut(s)	642, 1056
PspGI	CCWGG	2 cut(s)	642, 1056
PspN4I	GGNNCC	2 cut(s)	129, 1075
PspPI	GGNCC	2 cut(s)	742, 884
PstI	CTGCAG	3 cut(s)	370, 388, 808
PsuI	RGATCY	3 cut(s)	262, 698, 1013
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	397, 1178
RsaNI	GTAC	2 cut(s)	396, 1177
RseI	CAYNNNNRTG	1 cut(s)	624
SacI	GAGCTC	1 cut(s)	853
SaqAI	TTAA	2 cut(s)	36, 515
Sau3AI	GATC	7 cut(s)	189, 262, 591, 633, 698, 792, 1013
Sau96I	GGNCC	2 cut(s)	742, 884
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	3 cut(s)	644, 1058, 1078
SduI	GDGCHC	4 cut(s)	68, 437, 730, 853
SfaNI	GCATC	3 cut(s)	127, 151, 298
SfcI	CTRYAG	6 cut(s)	75, 276, 366, 384, 606, 804
Sfr274I	CTCGAG	2 cut(s)	428, 825
SlaI	CTCGAG	2 cut(s)	428, 825
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	4 cut(s)	428, 652, 665, 825
SmoI	CTYRAG	4 cut(s)	428, 652, 665, 825
Sse9I	AATT	8 cut(s)	29, 111, 185, 334, 345, 761, 843, 1043
SsiI	CCGC	4 cut(s)	124, 150, 215, 1190
SspMI	CTAG	2 cut(s)	390, 771
SstI	GAGCTC	1 cut(s)	853
StyD4I	CCNGG	3 cut(s)	642, 1056, 1076
TaaI	ACNGT	7 cut(s)	22, 91, 454, 661, 790, 1029, 1181
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	5 cut(s)	159, 429, 543, 826, 1107
TasI	AATT	8 cut(s)	29, 111, 185, 334, 345, 761, 843, 1043
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	443, 482, 553
Tru1I	TTAA	2 cut(s)	36, 515
Tru9I	TTAA	2 cut(s)	36, 515
TscAI	CASTG	3 cut(s)	666, 813, 864
TseFI	GTSAC	1 cut(s)	956
Tsp45I	GTSAC	1 cut(s)	956
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	3 cut(s)	666, 813, 864
XapI	RAATTY	2 cut(s)	29, 1043
XceI	RCATGY	1 cut(s)	1177
XhoI	CTCGAG	2 cut(s)	428, 825
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	2 cut(s)	390, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.