Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000538

Physical Location & Seq

Genomic Coordinates Reverse (-)

73114989 .. 73120047

Gene Structure 5059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0543000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGACATCATCATCGGGCGTTGGTGGAAGGTACATGGCTTACTCGCCCTCGCGGTCGGCCCCTCTCTCTCCTCACCTCTCCGGCCTTCGGTCCGTCTCCTCTTCCGCCGCTCTCGTCGCCGAGCAAGAAAAATACCTGTCTGAGCTATTCGGGGAGCGTCAGAAGCTCGGTCCATTCCTGCCTGTGCTGCCAAATTGCTGCAGGTTGTTGAACCAAGTTTTAGGTCAAAGTGGACTTGAACATGCTAGCCCCCTGGCTTCTGGAGGAATGTTTTCAAATGGAGGTGCCGATATGAACGGATGGGCATCACGGTTTCAATCAGAAATGTCAAGTTTATTACAGCCCTCATCAACACAAAATTGGCTTAGTCCTCAAAGTAGCTCATCTGGTCTAATTGTTAAGCGGACAATCAGAGTGGATATTCCCGTTGACAAATATCCTAATTATAACTTTGTTGGGCGGTTGCTAGGTCCTAGGGGAAACTCTCTTAAGCGAGTGGAAGCAACTACTGAGTGCCGTGTTCTGATCAGGGGCCGTGGTAGCATAAAGGATCCAGCCAGGGAAGATATGATGAGAGGTAAACCGGGGTATGAACATTTGAATGAACCTCTTCATATACTAGTGGAGGCAGAACTACCAGTTGAAATTGTTGATGCTCGTTTATTACAAGCGCGTGAAGTACTTGAAGATCTGCTCAGGCCTGTGGATGAATCTCAAGATTTCTACAAGAAGCAGCAGTTGCGAGAGTTGGCAATGCTCAATGGTACACTTCGTGATGAGGGTTCTCCCATGTCTGGTTCTGTGTCACCCTTCAACAACAGTCTTGGTGGTATGAAGAGGGCAAAGACCAGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

285

Amino Acids

31.16

Weight (kDa)

9.15

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH-I_KHDC4-BBP	PF22675	145 - 232	3e-19	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis	RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata	RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora	Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii	Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa	Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha	Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana	Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
Acc36I	ACCTGC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	284
AccBSI	CCGCTC	1 cut(s)	110
AccII	CGCG	2 cut(s)	52, 673
AciI	CCGC	5 cut(s)	52, 105, 108, 403, 460
AclWI	GGATC	2 cut(s)	545, 558
AdeI	CACNNNGTG	1 cut(s)	773
AfaI	GTAC	3 cut(s)	32, 681, 766
AfiI	CCNNNNNNNGG	2 cut(s)	87, 794
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	8 cut(s)	211, 239, 276, 317, 601, 644, 686, 814
AhlI	ACTAGT	1 cut(s)	619
AjnI	CCWGG	3 cut(s)	252, 557, 848
AluBI	AGCT	3 cut(s)	145, 166, 381
AluI	AGCT	3 cut(s)	145, 166, 381
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	2 cut(s)	545, 558
AoxI	GGCC	4 cut(s)	57, 82, 532, 698
ApeKI	GCWGC	3 cut(s)	187, 198, 733
Asp700I	GAANNNNTTC	2 cut(s)	271, 609
AspA2I	CCTAGG	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	5 cut(s)	58, 90, 170, 470, 532
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	2 cut(s)	65, 798
AsuNHI	GCTAGC	1 cut(s)	245
AvaII	GGWCC	3 cut(s)	90, 170, 470
AvrII	CCTAGG	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	550
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	174, 185, 745
BccI	CCATC	1 cut(s)	294
BceAI	ACGGC	2 cut(s)	501, 519
BciT130I	CCWGG	3 cut(s)	254, 559, 850
BclI	TGATCA	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	619
BfaI	CTAG	4 cut(s)	246, 467, 474, 620
BfmI	CTRYAG	1 cut(s)	199
BfrI	CTTAAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	192
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	4 cut(s)	108, 188, 199, 734
BlnI	CCTAGG	1 cut(s)	473
BlsI	GCNGC	4 cut(s)	109, 189, 200, 735
BmcAI	AGTACT	1 cut(s)	681
Bme1390I	CCNGG	4 cut(s)	254, 559, 585, 850
Bme18I	GGWCC	3 cut(s)	90, 170, 470
BmgT120I	GGNCC	5 cut(s)	58, 90, 170, 470, 532
BmiI	GGNNCC	4 cut(s)	60, 286, 533, 552
BmrFI	CCNGG	4 cut(s)	254, 559, 585, 850
BmsI	GCATC	2 cut(s)	314, 643
BmtI	GCTAGC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	585
BsaBI	GATNNNNATC	1 cut(s)	304
BsaJI	CCNNGG	6 cut(s)	252, 473, 535, 558, 584, 849
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 794
Bse1I	ACTGG	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	759
Bse8I	GATNNNNATC	1 cut(s)	304
BseBI	CCWGG	3 cut(s)	254, 559, 850
BseDI	CCNNGG	6 cut(s)	252, 473, 535, 558, 584, 849
BseGI	GGATG	2 cut(s)	305, 712
BseJI	GATNNNNATC	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	87, 794
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	3 cut(s)	132, 501, 709
BseNI	ACTGG	1 cut(s)	638
BseRI	GAGGAG	2 cut(s)	60, 88
BseXI	GCAGC	3 cut(s)	174, 185, 745
Bsh1236I	CGCG	2 cut(s)	52, 673
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	4 cut(s)	59, 84, 534, 700
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	81, 584
BslI	CCNNNNNNNGG	2 cut(s)	87, 794
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsnI	GGCC	4 cut(s)	59, 84, 534, 700
Bsp143I	GATC	3 cut(s)	525, 550, 688
BspACI	CCGC	5 cut(s)	52, 105, 108, 403, 460
BspANI	GGCC	4 cut(s)	59, 84, 534, 700
BspCNI	CTCAG	3 cut(s)	133, 502, 708
BspFNI	CGCG	2 cut(s)	52, 673
BspLI	GGNNCC	4 cut(s)	60, 286, 533, 552
BspMAI	CTGCAG	1 cut(s)	203
BspMI	ACCTGC	1 cut(s)	192
BspOI	GCTAGC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	545, 558
BspT107I	GGYRCC	1 cut(s)	284
BspTI	CTTAAG	1 cut(s)	488
BsrBI	CCGCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	638
BssECI	CCNNGG	6 cut(s)	252, 473, 535, 558, 584, 849
BssMI	GATC	3 cut(s)	525, 550, 688
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	3 cut(s)	254, 559, 850
Bst4CI	ACNGT	2 cut(s)	312, 821
Bst6I	CTCTTC	3 cut(s)	106, 615, 830
BstAFI	CTTAAG	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	4 cut(s)	141, 365, 510, 695
BstDSI	CCRYGG	1 cut(s)	535
BstF5I	GGATG	2 cut(s)	305, 712
BstFNI	CGCG	2 cut(s)	52, 673
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	3 cut(s)	528, 553, 691
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	3 cut(s)	525, 550, 688
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 163, 187, 540, 739
BstNI	CCWGG	3 cut(s)	254, 559, 850
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	4 cut(s)	252, 557, 583, 848
BstSFI	CTRYAG	1 cut(s)	199
BstUI	CGCG	2 cut(s)	52, 673
BstV1I	GCAGC	3 cut(s)	174, 185, 745
BstX2I	RGATCY	2 cut(s)	550, 688
BstYI	RGATCY	2 cut(s)	550, 688
BsuRI	GGCC	4 cut(s)	59, 84, 534, 700
BtgI	CCRYGG	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	305, 712
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	673
Cfr13I	GGNCC	5 cut(s)	58, 90, 170, 470, 532
CpoI	CGGWCCG	1 cut(s)	90
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	31, 680, 765
CspCI	CAANNNNNGTGG	2 cut(s)	396, 431
CspI	CGGWCCG	1 cut(s)	90
CviAII	CATG	3 cut(s)	34, 242, 790
CviQI	GTAC	3 cut(s)	31, 680, 765
DdeI	CTNAG	4 cut(s)	141, 365, 510, 695
DpnI	GATC	3 cut(s)	527, 552, 690
DpnII	GATC	3 cut(s)	525, 550, 688
DraIII	CACNNNGTG	1 cut(s)	773
Eam1104I	CTCTTC	3 cut(s)	106, 615, 830
EarI	CTCTTC	3 cut(s)	106, 615, 830
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	473
Eco147I	AGGCCT	1 cut(s)	700
Eco47I	GGWCC	3 cut(s)	90, 170, 470
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	3 cut(s)	252, 557, 848
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	3 cut(s)	37, 245, 793
FatI	CATG	3 cut(s)	33, 241, 789
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	4 cut(s)	108, 188, 199, 734
FokI	GGATG	2 cut(s)	312, 719
Fsp4HI	GCNGC	4 cut(s)	108, 188, 199, 734
FspBI	CTAG	4 cut(s)	246, 467, 474, 620
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	4 cut(s)	108, 188, 199, 734
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	4 cut(s)	59, 84, 534, 700
HapII	CCGG	2 cut(s)	81, 584
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	3 cut(s)	37, 245, 793
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	710
HpaII	CCGG	2 cut(s)	81, 584
HphI	GGTGA	2 cut(s)	65, 798
Hpy166II	GTNNAC	4 cut(s)	233, 430, 581, 767
Hpy188I	TCNGA	5 cut(s)	142, 162, 322, 413, 525
Hpy188III	TCNNGA	3 cut(s)	261, 716, 773
Hpy8I	GTNNAC	4 cut(s)	233, 430, 581, 767
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	21, 95, 820
HpyCH4III	ACNGT	2 cut(s)	312, 821
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 163, 187, 540, 739
HpyF3I	CTNAG	4 cut(s)	141, 365, 510, 695
Hsp92II	CATG	3 cut(s)	37, 245, 793
HspAI	GCGC	1 cut(s)	671
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	3 cut(s)	525, 550, 688
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	3 cut(s)	174, 185, 745
LweI	GCATC	2 cut(s)	314, 643
MaeI	CTAG	4 cut(s)	246, 467, 474, 620
MaeIII	GTNAC	1 cut(s)	804
MalI	GATC	3 cut(s)	527, 552, 690
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	3 cut(s)	525, 550, 688
MboII	GAAGA	5 cut(s)	93, 575, 602, 698, 847
MflI	RGATCY	2 cut(s)	550, 688
MluCI	AATT	5 cut(s)	193, 358, 393, 442, 645
MroXI	GAANNNNTTC	2 cut(s)	271, 609
MseI	TTAA	2 cut(s)	399, 489
MslI	CAYNNNNRTG	1 cut(s)	600
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	2 cut(s)	81, 584
MspR9I	CCNGG	4 cut(s)	254, 559, 585, 850
MvaI	CCWGG	3 cut(s)	254, 559, 850
MvnI	CGCG	2 cut(s)	52, 673
MwoI	GCNNNNNNNGC	5 cut(s)	116, 163, 187, 540, 739
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	3 cut(s)	525, 550, 688
NheI	GCTAGC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	37, 245, 793
NlaIV	GGNNCC	4 cut(s)	60, 286, 533, 552
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	804
NspI	RCATGY	1 cut(s)	245
PceI	AGGCCT	1 cut(s)	700
PdmI	GAANNNNTTC	2 cut(s)	271, 609
PfeI	GAWTC	1 cut(s)	710
PkrI	GCNGC	4 cut(s)	109, 189, 200, 735
PpuMI	RGGWCCY	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	3 cut(s)	252, 557, 848
PspGI	CCWGG	3 cut(s)	252, 557, 848
PspN4I	GGNNCC	4 cut(s)	60, 286, 533, 552
PspPI	GGNCC	5 cut(s)	58, 90, 170, 470, 532
PspPPI	RGGWCCY	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	550, 688
RsaI	GTAC	3 cut(s)	32, 681, 766
RsaNI	GTAC	3 cut(s)	31, 680, 765
RseI	CAYNNNNRTG	1 cut(s)	600
Rsr2I	CGGWCCG	1 cut(s)	90
RsrII	CGGWCCG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	399, 489
SatI	GCNGC	4 cut(s)	108, 188, 199, 734
Sau3AI	GATC	3 cut(s)	525, 550, 688
Sau96I	GGNCC	5 cut(s)	58, 90, 170, 470, 532
ScaI	AGTACT	1 cut(s)	681
ScrFI	CCNGG	4 cut(s)	254, 559, 585, 850
SfaNI	GCATC	2 cut(s)	314, 643
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	3 cut(s)	90, 170, 470
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	2 cut(s)	488, 714
SmoI	CTYRAG	2 cut(s)	488, 714
SpeI	ACTAGT	1 cut(s)	619
Sse9I	AATT	5 cut(s)	193, 358, 393, 442, 645
SseBI	AGGCCT	1 cut(s)	700
SsiI	CCGC	5 cut(s)	52, 105, 108, 403, 460
SspMI	CTAG	4 cut(s)	246, 467, 474, 620
StuI	AGGCCT	1 cut(s)	700
StyD4I	CCNGG	4 cut(s)	252, 557, 583, 848
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	312, 821
TaqII	GACCGA	2 cut(s)	78, 158
TasI	AATT	5 cut(s)	193, 358, 393, 442, 645
TatI	WGTACW	1 cut(s)	679
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	710
Tru1I	TTAA	2 cut(s)	399, 489
Tru9I	TTAA	2 cut(s)	399, 489
TseFI	GTSAC	1 cut(s)	804
TseI	GCWGC	3 cut(s)	187, 198, 733
Tsp45I	GTSAC	1 cut(s)	804
TspDTI	ATGAA	6 cut(s)	308, 602, 606, 618, 723, 848
TspGWI	ACGGA	2 cut(s)	82, 312
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	3 cut(s)	90, 170, 470
XceI	RCATGY	1 cut(s)	245
XmaJI	CCTAGG	1 cut(s)	473
XmnI	GAANNNNTTC	2 cut(s)	271, 609
XspI	CTAG	4 cut(s)	246, 467, 474, 620
ZrmI	AGTACT	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.