histone deacetylase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 135 |
| Acc16I | TGCGCA | 1 cut(s) | 261 |
| AccI | GTMKAC | 2 cut(s) | 204, 1018 |
| AccII | CGCG | 1 cut(s) | 471 |
| AccIII | TCCGGA | 1 cut(s) | 453 |
| AciI | CCGC | 2 cut(s) | 471, 1349 |
| AclWI | GGATC | 2 cut(s) | 262, 485 |
| AcoI | YGGCCR | 2 cut(s) | 309, 418 |
| AcsI | RAATTY | 1 cut(s) | 221 |
| AcuI | CTGAAG | 2 cut(s) | 132, 1134 |
| AcyI | GRCGYC | 1 cut(s) | 132 |
| AfaI | GTAC | 1 cut(s) | 214 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 889 |
| AgsI | TTSAA | 3 cut(s) | 565, 640, 1315 |
| AjnI | CCWGG | 4 cut(s) | 99, 420, 1086, 1303 |
| AleI | CACNNNNGTG | 1 cut(s) | 803 |
| Alw26I | GTCTC | 2 cut(s) | 176, 842 |
| AlwI | GGATC | 2 cut(s) | 262, 485 |
| Ama87I | CYCGRG | 1 cut(s) | 1225 |
| Aor13HI | TCCGGA | 1 cut(s) | 453 |
| AoxI | GGCC | 4 cut(s) | 282, 309, 418, 645 |
| ApeKI | GCWGC | 3 cut(s) | 532, 926, 1045 |
| ApoI | RAATTY | 1 cut(s) | 221 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 510 |
| AspLEI | GCGC | 1 cut(s) | 262 |
| AspS9I | GGNCC | 2 cut(s) | 282, 880 |
| AsuC2I | CCSGG | 1 cut(s) | 884 |
| AsuHPI | GGTGA | 3 cut(s) | 700, 850, 1232 |
| AsuII | TTCGAA | 1 cut(s) | 704 |
| AvaI | CYCGRG | 1 cut(s) | 1225 |
| AvaII | GGWCC | 1 cut(s) | 880 |
| BalI | TGGCCA | 1 cut(s) | 420 |
| BanII | GRGCYC | 1 cut(s) | 1042 |
| BauI | CACGAG | 1 cut(s) | 894 |
| BbsI | GAAGAC | 1 cut(s) | 894 |
| BbvI | GCAGC | 3 cut(s) | 519, 938, 1057 |
| BccI | CCATC | 2 cut(s) | 386, 562 |
| BciT130I | CCWGG | 4 cut(s) | 101, 422, 1088, 1305 |
| BclI | TGATCA | 1 cut(s) | 771 |
| BcnI | CCSGG | 1 cut(s) | 884 |
| BcoDI | GTCTC | 2 cut(s) | 176, 842 |
| BfaI | CTAG | 6 cut(s) | 317, 485, 987, 1026, 1244, 1357 |
| BfmI | CTRYAG | 1 cut(s) | 1137 |
| BisI | GCNGC | 3 cut(s) | 533, 927, 1046 |
| BlpI | GCTNAGC | 1 cut(s) | 1041 |
| BlsI | GCNGC | 3 cut(s) | 534, 928, 1047 |
| Bme1390I | CCNGG | 5 cut(s) | 101, 422, 884, 1088, 1305 |
| Bme18I | GGWCC | 1 cut(s) | 880 |
| BmeT110I | CYCGRG | 1 cut(s) | 1225 |
| BmgT120I | GGNCC | 2 cut(s) | 282, 880 |
| BmiI | GGNNCC | 2 cut(s) | 882, 1110 |
| BmrFI | CCNGG | 5 cut(s) | 101, 422, 884, 1088, 1305 |
| BmrI | ACTGGG | 1 cut(s) | 970 |
| BmsI | GCATC | 5 cut(s) | 103, 247, 319, 391, 1072 |
| BmuI | ACTGGG | 1 cut(s) | 970 |
| BoxI | GACNNNNGTC | 1 cut(s) | 854 |
| BpiI | GAAGAC | 1 cut(s) | 894 |
| BpmI | CTGGAG | 2 cut(s) | 1127, 1164 |
| Bpu10I | CCTNAGC | 1 cut(s) | 441 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1041 |
| Bpu14I | TTCGAA | 1 cut(s) | 704 |
| BpuEI | CTTGAG | 1 cut(s) | 612 |
| BpuMI | CCSGG | 1 cut(s) | 884 |
| Bsa29I | ATCGAT | 1 cut(s) | 837 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1176 |
| BsaHI | GRCGYC | 1 cut(s) | 132 |
| BsaJI | CCNNGG | 4 cut(s) | 99, 495, 1086, 1304 |
| BsaWI | WCCGGW | 1 cut(s) | 453 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 58, 88 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 889 |
| Bse1I | ACTGG | 5 cut(s) | 58, 882, 934, 965, 1110 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1176 |
| BseAI | TCCGGA | 1 cut(s) | 453 |
| BseBI | CCWGG | 4 cut(s) | 101, 422, 1088, 1305 |
| BseCI | ATCGAT | 1 cut(s) | 837 |
| BseDI | CCNNGG | 4 cut(s) | 99, 495, 1086, 1304 |
| BseGI | GGATG | 5 cut(s) | 94, 388, 406, 1021, 1096 |
| BseJI | GATNNNNATC | 1 cut(s) | 1176 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 889 |
| BseMII | CTCAG | 3 cut(s) | 537, 663, 1055 |
| BseNI | ACTGG | 5 cut(s) | 58, 882, 934, 965, 1110 |
| BseXI | GCAGC | 3 cut(s) | 519, 938, 1057 |
| BseYI | CCCAGC | 1 cut(s) | 62 |
| Bsh1236I | CGCG | 1 cut(s) | 471 |
| Bsh1285I | CGRYCG | 1 cut(s) | 846 |
| BshFI | GGCC | 4 cut(s) | 284, 311, 420, 647 |
| BshVI | ATCGAT | 1 cut(s) | 837 |
| BsiEI | CGRYCG | 1 cut(s) | 846 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1225 |
| BsiSI | CCGG | 2 cut(s) | 454, 884 |
| BslFI | GGGAC | 2 cut(s) | 462, 866 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 889 |
| BsmAI | GTCTC | 2 cut(s) | 176, 842 |
| BsmFI | GGGAC | 2 cut(s) | 462, 866 |
| BsnI | GGCC | 4 cut(s) | 284, 311, 420, 647 |
| BsoBI | CYCGRG | 1 cut(s) | 1225 |
| Bsp119I | TTCGAA | 1 cut(s) | 704 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1042 |
| Bsp13I | TCCGGA | 1 cut(s) | 453 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1041 |
| BspACI | CCGC | 2 cut(s) | 471, 1349 |
| BspANI | GGCC | 4 cut(s) | 284, 311, 420, 647 |
| BspCNI | CTCAG | 3 cut(s) | 536, 662, 1054 |
| BspDI | ATCGAT | 1 cut(s) | 837 |
| BspEI | TCCGGA | 1 cut(s) | 453 |
| BspFNI | CGCG | 1 cut(s) | 471 |
| BspLI | GGNNCC | 2 cut(s) | 882, 1110 |
| BspPI | GGATC | 2 cut(s) | 262, 485 |
| BspT104I | TTCGAA | 1 cut(s) | 704 |
| BsrI | ACTGG | 5 cut(s) | 58, 882, 934, 965, 1110 |
| BssECI | CCNNGG | 4 cut(s) | 99, 495, 1086, 1304 |
| BssNI | GRCGYC | 1 cut(s) | 132 |
| BssSI | CACGAG | 1 cut(s) | 894 |
| BssT1I | CCWWGG | 1 cut(s) | 495 |
| Bst2BI | CACGAG | 1 cut(s) | 894 |
| Bst2UI | CCWGG | 4 cut(s) | 101, 422, 1088, 1305 |
| Bst4CI | ACNGT | 3 cut(s) | 15, 396, 954 |
| Bst6I | CTCTTC | 1 cut(s) | 501 |
| BstACI | GRCGYC | 1 cut(s) | 132 |
| BstBI | TTCGAA | 1 cut(s) | 704 |
| BstC8I | GCNNGC | 1 cut(s) | 1347 |
| BstDEI | CTNAG | 4 cut(s) | 441, 523, 649, 1041 |
| BstF5I | GGATG | 5 cut(s) | 94, 388, 406, 1021, 1096 |
| BstFNI | CGCG | 1 cut(s) | 471 |
| BstHHI | GCGC | 1 cut(s) | 262 |
| BstMAI | GTCTC | 2 cut(s) | 176, 842 |
| BstMCI | CGRYCG | 1 cut(s) | 846 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 63, 794, 1054 |
| BstNI | CCWGG | 4 cut(s) | 101, 422, 1088, 1305 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 854 |
| BstSCI | CCNGG | 5 cut(s) | 99, 420, 882, 1086, 1303 |
| BstSFI | CTRYAG | 1 cut(s) | 1137 |
| BstUI | CGCG | 1 cut(s) | 471 |
| BstV1I | GCAGC | 3 cut(s) | 519, 938, 1057 |
| BstV2I | GAAGAC | 1 cut(s) | 894 |
| BstX2I | RGATCY | 1 cut(s) | 1353 |
| BstYI | RGATCY | 1 cut(s) | 1353 |
| Bsu15I | ATCGAT | 1 cut(s) | 837 |
| BsuRI | GGCC | 4 cut(s) | 284, 311, 420, 647 |
| BsuTUI | ATCGAT | 1 cut(s) | 837 |
| BtsCI | GGATG | 5 cut(s) | 94, 388, 406, 1021, 1096 |
| BtsIMutI | CAGTG | 5 cut(s) | 20, 51, 66, 958, 1103 |
| Cac8I | GCNNGC | 1 cut(s) | 1347 |
| CfoI | GCGC | 1 cut(s) | 262 |
| Cfr13I | GGNCC | 2 cut(s) | 282, 880 |
| ClaI | ATCGAT | 1 cut(s) | 837 |
| Csp6I | GTAC | 1 cut(s) | 213 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 260, 295 |
| CviAII | CATG | 4 cut(s) | 549, 769, 907, 1012 |
| CviQI | GTAC | 1 cut(s) | 213 |
| DdeI | CTNAG | 4 cut(s) | 441, 523, 649, 1041 |
| EaeI | YGGCCR | 2 cut(s) | 309, 418 |
| Eam1104I | CTCTTC | 1 cut(s) | 501 |
| EarI | CTCTTC | 1 cut(s) | 501 |
| Eco130I | CCWWGG | 1 cut(s) | 495 |
| Eco24I | GRGCYC | 1 cut(s) | 1042 |
| Eco47I | GGWCC | 1 cut(s) | 880 |
| Eco57I | CTGAAG | 2 cut(s) | 132, 1134 |
| Eco88I | CYCGRG | 1 cut(s) | 1225 |
| EcoRII | CCWGG | 4 cut(s) | 99, 420, 1086, 1303 |
| EcoT14I | CCWWGG | 1 cut(s) | 495 |
| EcoT38I | GRGCYC | 1 cut(s) | 1042 |
| ErhI | CCWWGG | 1 cut(s) | 495 |
| FaeI | CATG | 4 cut(s) | 552, 772, 910, 1015 |
| FaqI | GGGAC | 2 cut(s) | 462, 866 |
| FatI | CATG | 4 cut(s) | 548, 768, 906, 1011 |
| FauI | CCCGC | 2 cut(s) | 464, 1342 |
| FbaI | TGATCA | 1 cut(s) | 771 |
| FblI | GTMKAC | 2 cut(s) | 204, 1018 |
| Fnu4HI | GCNGC | 3 cut(s) | 533, 927, 1046 |
| FokI | GGATG | 5 cut(s) | 81, 375, 413, 1008, 1103 |
| FriOI | GRGCYC | 1 cut(s) | 1042 |
| Fsp4HI | GCNGC | 3 cut(s) | 533, 927, 1046 |
| FspBI | CTAG | 6 cut(s) | 317, 485, 987, 1026, 1244, 1357 |
| FspI | TGCGCA | 1 cut(s) | 261 |
| GlaI | GCGC | 1 cut(s) | 261 |
| GluI | GCNGC | 3 cut(s) | 533, 927, 1046 |
| GsaI | CCCAGC | 1 cut(s) | 66 |
| GsuI | CTGGAG | 2 cut(s) | 1127, 1164 |
| HaeIII | GGCC | 4 cut(s) | 284, 311, 420, 647 |
| HapII | CCGG | 2 cut(s) | 454, 884 |
| HhaI | GCGC | 1 cut(s) | 262 |
| Hin1I | GRCGYC | 1 cut(s) | 132 |
| Hin1II | CATG | 4 cut(s) | 552, 772, 910, 1015 |
| Hin6I | GCGC | 1 cut(s) | 260 |
| HinP1I | GCGC | 1 cut(s) | 260 |
| HincII | GTYRAC | 2 cut(s) | 571, 1019 |
| HindII | GTYRAC | 2 cut(s) | 571, 1019 |
| HindIII | AAGCTT | 2 cut(s) | 786, 1097 |
| HinfI | GANTC | 5 cut(s) | 450, 545, 737, 839, 1015 |
| HpaI | GTTAAC | 1 cut(s) | 571 |
| HpaII | CCGG | 2 cut(s) | 454, 884 |
| HphI | GGTGA | 3 cut(s) | 700, 850, 1232 |
| Hpy166II | GTNNAC | 4 cut(s) | 205, 571, 984, 1019 |
| Hpy188I | TCNGA | 5 cut(s) | 559, 587, 601, 652, 742 |
| Hpy188III | TCNNGA | 6 cut(s) | 454, 629, 847, 1175, 1227, 1312 |
| Hpy8I | GTNNAC | 4 cut(s) | 205, 571, 984, 1019 |
| HpyAV | CCTTC | 6 cut(s) | 451, 559, 634, 904, 1109, 1286 |
| HpyCH4III | ACNGT | 3 cut(s) | 15, 396, 954 |
| HpyCH4IV | ACGT | 1 cut(s) | 132 |
| HpyCH4V | TGCA | 5 cut(s) | 81, 332, 502, 995, 1001 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 63, 794, 1054 |
| HpyF3I | CTNAG | 4 cut(s) | 441, 523, 649, 1041 |
| HpySE526I | ACGT | 1 cut(s) | 132 |
| Hsp92I | GRCGYC | 1 cut(s) | 132 |
| Hsp92II | CATG | 4 cut(s) | 552, 772, 910, 1015 |
| HspAI | GCGC | 1 cut(s) | 260 |
| Kpn2I | TCCGGA | 1 cut(s) | 453 |
| Ksp22I | TGATCA | 1 cut(s) | 771 |
| KspAI | GTTAAC | 1 cut(s) | 571 |
| LmnI | GCTCC | 6 cut(s) | 242, 409, 1108, 1145, 1272, 1306 |
| Lsp1109I | GCAGC | 3 cut(s) | 519, 938, 1057 |
| LweI | GCATC | 5 cut(s) | 103, 247, 319, 391, 1072 |
| MaeI | CTAG | 6 cut(s) | 317, 485, 987, 1026, 1244, 1357 |
| MaeII | ACGT | 1 cut(s) | 132 |
| MaeIII | GTNAC | 3 cut(s) | 346, 856, 940 |
| MboII | GAAGA | 5 cut(s) | 138, 297, 518, 614, 894 |
| MfeI | CAATTG | 2 cut(s) | 275, 996 |
| MflI | RGATCY | 1 cut(s) | 1353 |
| MhlI | GDGCHC | 1 cut(s) | 1042 |
| MlsI | TGGCCA | 1 cut(s) | 420 |
| MluCI | AATT | 7 cut(s) | 106, 221, 275, 560, 750, 996, 1330 |
| MluNI | TGGCCA | 1 cut(s) | 420 |
| MlyI | GAGTC | 4 cut(s) | 444, 554, 731, 1024 |
| MmeI | TCCRAC | 3 cut(s) | 295, 378, 762 |
| MnlI | CCTC | 8 cut(s) | 146, 439, 619, 658, 673, 684, 709, 823 |
| Mox20I | TGGCCA | 1 cut(s) | 420 |
| MroI | TCCGGA | 1 cut(s) | 453 |
| MroXI | GAANNNNTTC | 1 cut(s) | 510 |
| MscI | TGGCCA | 1 cut(s) | 420 |
| MseI | TTAA | 3 cut(s) | 476, 570, 621 |
| MslI | CAYNNNNRTG | 4 cut(s) | 165, 586, 803, 1026 |
| Msp20I | TGGCCA | 1 cut(s) | 420 |
| MspA1I | CMGCKG | 1 cut(s) | 1142 |
| MspI | CCGG | 2 cut(s) | 454, 884 |
| MspR9I | CCNGG | 5 cut(s) | 101, 422, 884, 1088, 1305 |
| MunI | CAATTG | 2 cut(s) | 275, 996 |
| MvaI | CCWGG | 4 cut(s) | 101, 422, 1088, 1305 |
| MvnI | CGCG | 1 cut(s) | 471 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 63, 794, 1054 |
| NciI | CCSGG | 1 cut(s) | 884 |
| NlaIII | CATG | 4 cut(s) | 552, 772, 910, 1015 |
| NlaIV | GGNNCC | 2 cut(s) | 882, 1110 |
| NmeAIII | GCCGAG | 2 cut(s) | 8, 568 |
| NmuCI | GTSAC | 1 cut(s) | 856 |
| NsbI | TGCGCA | 1 cut(s) | 261 |
| NspV | TTCGAA | 1 cut(s) | 704 |
| OliI | CACNNNNGTG | 1 cut(s) | 803 |
| PaeR7I | CTCGAG | 1 cut(s) | 1225 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 843 |
| PdmI | GAANNNNTTC | 1 cut(s) | 510 |
| PfeI | GAWTC | 1 cut(s) | 839 |
| PfoI | TCCNGGA | 1 cut(s) | 882 |
| PkrI | GCNGC | 3 cut(s) | 534, 928, 1047 |
| Ple19I | CGATCG | 1 cut(s) | 846 |
| PleI | GAGTC | 4 cut(s) | 444, 553, 731, 1023 |
| PpsI | GAGTC | 4 cut(s) | 444, 553, 731, 1023 |
| PshAI | GACNNNNGTC | 1 cut(s) | 854 |
| Psp6I | CCWGG | 4 cut(s) | 99, 420, 1086, 1303 |
| PspFI | CCCAGC | 1 cut(s) | 62 |
| PspGI | CCWGG | 4 cut(s) | 99, 420, 1086, 1303 |
| PspN4I | GGNNCC | 2 cut(s) | 882, 1110 |
| PspPI | GGNCC | 2 cut(s) | 282, 880 |
| PsuI | RGATCY | 1 cut(s) | 1353 |
| PvuI | CGATCG | 1 cut(s) | 846 |
| PvuII | CAGCTG | 1 cut(s) | 1142 |
| RsaI | GTAC | 1 cut(s) | 214 |
| RsaNI | GTAC | 1 cut(s) | 213 |
| RseI | CAYNNNNRTG | 4 cut(s) | 165, 586, 803, 1026 |
| SalI | GTCGAC | 1 cut(s) | 1017 |
| SaqAI | TTAA | 3 cut(s) | 476, 570, 621 |
| SatI | GCNGC | 3 cut(s) | 533, 927, 1046 |
| Sau96I | GGNCC | 2 cut(s) | 282, 880 |
| SchI | GAGTC | 4 cut(s) | 444, 554, 731, 1024 |
| ScrFI | CCNGG | 5 cut(s) | 101, 422, 884, 1088, 1305 |
| SduI | GDGCHC | 1 cut(s) | 1042 |
| SfaNI | GCATC | 5 cut(s) | 103, 247, 319, 391, 1072 |
| SfcI | CTRYAG | 1 cut(s) | 1137 |
| Sfr274I | CTCGAG | 1 cut(s) | 1225 |
| SfuI | TTCGAA | 1 cut(s) | 704 |
| SinI | GGWCC | 1 cut(s) | 880 |
| SlaI | CTCGAG | 1 cut(s) | 1225 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 165, 586, 803, 1026 |
| SmlI | CTYRAG | 2 cut(s) | 627, 1225 |
| SmoI | CTYRAG | 2 cut(s) | 627, 1225 |
| Sse9I | AATT | 7 cut(s) | 106, 221, 275, 560, 750, 996, 1330 |
| SsiI | CCGC | 2 cut(s) | 471, 1349 |
| SspMI | CTAG | 6 cut(s) | 317, 485, 987, 1026, 1244, 1357 |
| StyD4I | CCNGG | 5 cut(s) | 99, 420, 882, 1086, 1303 |
| StyI | CCWWGG | 1 cut(s) | 495 |
| TaaI | ACNGT | 3 cut(s) | 15, 396, 954 |
| TaiI | ACGT | 1 cut(s) | 135 |
| TasI | AATT | 7 cut(s) | 106, 221, 275, 560, 750, 996, 1330 |
| TatI | WGTACW | 1 cut(s) | 212 |
| TfiI | GAWTC | 1 cut(s) | 839 |
| Tru1I | TTAA | 3 cut(s) | 476, 570, 621 |
| Tru9I | TTAA | 3 cut(s) | 476, 570, 621 |
| TscAI | CASTG | 5 cut(s) | 20, 58, 73, 965, 1110 |
| TseFI | GTSAC | 1 cut(s) | 856 |
| TseI | GCWGC | 3 cut(s) | 532, 926, 1045 |
| Tsp45I | GTSAC | 1 cut(s) | 856 |
| TspDTI | ATGAA | 4 cut(s) | 377, 567, 607, 923 |
| TspGWI | ACGGA | 1 cut(s) | 396 |
| TspRI | CASTG | 5 cut(s) | 20, 58, 73, 965, 1110 |
| VpaK11BI | GGWCC | 1 cut(s) | 880 |
| XapI | RAATTY | 1 cut(s) | 221 |
| XhoI | CTCGAG | 1 cut(s) | 1225 |
| XmiI | GTMKAC | 2 cut(s) | 204, 1018 |
| XmnI | GAANNNNTTC | 1 cut(s) | 510 |
| XspI | CTAG | 6 cut(s) | 317, 485, 987, 1026, 1244, 1357 |
| ZraI | GACGTC | 1 cut(s) | 133 |