Rroxscaffold_7G00211980

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000538
Physical Location & Seq
Forward (+)
62420446 .. 62429319
8874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211980.1

Sequence Viewer

Length: 837 bp
ATGGCAAAGACTGATCAGGTTATCGATTTTATCAAGTCACAAGTTACCAACGCTGGAGATGGATTCGTCTCGGACTTGGCACAATGGACAAAGGAGTTATTACTCGTAAAAGGTGGTTGTGCTGATGCCTTTATACTCGAGCATGGGAAAGGAGTTTCCCTATCTTCGATGTGGGATGCAAGGTTGTTCTTCGATGCCCTATCAGCCCTCTACCGTGTAATTAGATGGGTTGTGATGGCCATGCCCCGGGCCCCGGTTGCCCGGGTGACAACTTCCATGGGCCCCGTCATGAATACATCCTTATTAAAGCCAGAGAAGCTTGATGCTGTGATGGTTGGTGCAGCTGATCTCATATCGAAGCCATTTCCTGGGTTCAATAATAATCTAGTGGATGCCAAGCCATTTGATGGCCATGATGCGTTTGCATGTGCTAAGGACGGACTTCTGAAAATCTTTGATCAAGGGTTAGAAGCTTTAGCTAATGACCAATTACAAAACATAATCTCCCAGAGGAAACCCTCTGCTTTTATTCAAGCTAGAAATGAGTTGAAGGTGGCCTCAGACCTAGCAGCTTCAATTACTCTGAAGAAGTTTGTGCTCCAGCAAGAGTCTTCCAAGTATACCGATGCAAAGAAAGAAATTCTTGCCTCAGAGGAGAAAATTGCTAACCTTAAGGCAACTCTAGCAATAGAAGGGAGCAAGAAGGCGAAGTTTGATGAGGTCTTGGATTCGATTGTGACTCAAGTAACCTCTGCCAAAGATAGATTGGTCTCAGACTTAGCACAAGTGGCCGGCATGGAGGGAACAGTCCAAGCTGCTAACCAGTTAGCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

278

Amino Acids

30.04

Weight (kDa)

6.19

Isoelectric Point (pI)

24.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 368, 407
AccI GTMKAC 1 cut(s) 620
AcoI YGGCCR 3 cut(s) 237, 409, 789
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 605
AfiI CCNNNNNNNGG 4 cut(s) 246, 253, 368, 407
AflII CTTAAG 1 cut(s) 671
AgsI TTSAA 4 cut(s) 376, 533, 550, 576
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 7 cut(s) 319, 344, 473, 479, 536, 572, 815
AluI AGCT 7 cut(s) 319, 344, 473, 479, 536, 572, 815
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 2 cut(s) 73, 775
Ama87I CYCGRG 3 cut(s) 137, 246, 261
AoxI GGCC 6 cut(s) 237, 249, 280, 409, 555, 789
ApaI GGGCCC 2 cut(s) 253, 284
ApeKI GCWGC 3 cut(s) 341, 569, 815
ApoI RAATTY 1 cut(s) 639
AspS9I GGNCC 4 cut(s) 249, 250, 280, 281
AsuC2I CCSGG 5 cut(s) 247, 248, 254, 262, 263
AsuHPI GGTGA 1 cut(s) 277
AvaI CYCGRG 3 cut(s) 137, 246, 261
BaeGI GKGCMC 2 cut(s) 253, 284
BalI TGGCCA 2 cut(s) 239, 411
BanII GRGCYC 2 cut(s) 253, 284
BbsI GAAGAC 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 3 cut(s) 353, 581, 802
BccI CCATC 5 cut(s) 53, 219, 229, 325, 401
BciT130I CCWGG 1 cut(s) 369
BclI TGATCA 2 cut(s) 13, 457
BcnI CCSGG 5 cut(s) 247, 248, 254, 262, 263
BcoDI GTCTC 2 cut(s) 73, 775
BfaI CTAG 4 cut(s) 386, 537, 566, 683
BfrI CTTAAG 1 cut(s) 671
BisI GCNGC 3 cut(s) 342, 570, 816
BlsI GCNGC 3 cut(s) 343, 571, 817
Bme1390I CCNGG 6 cut(s) 247, 248, 254, 262, 263, 369
BmeT110I CYCGRG 3 cut(s) 137, 246, 261
BmgT120I GGNCC 4 cut(s) 249, 250, 280, 281
BmiI GGNNCC 4 cut(s) 251, 252, 282, 283
BmrFI CCNGG 6 cut(s) 247, 248, 254, 262, 263, 369
BmsI GCATC 7 cut(s) 115, 166, 184, 313, 382, 406, 616
BpiI GAAGAC 1 cut(s) 603
BpmI CTGGAG 2 cut(s) 75, 584
Bpu10I CCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 726
BpuMI CCSGG 5 cut(s) 247, 248, 254, 262, 263
Bsa29I ATCGAT 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 775
BsaJI CCNNGG 6 cut(s) 245, 246, 252, 261, 276, 368
BsaXI ACNNNNNCTCC 2 cut(s) 488, 518
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 253, 368, 407
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 1 cut(s) 823
BseBI CCWGG 1 cut(s) 369
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 6 cut(s) 245, 246, 252, 261, 276, 368
BseGI GGATG 3 cut(s) 181, 296, 397
BseLI CCNNNNNNNGG 4 cut(s) 246, 253, 368, 407
BseMII CTCAG 3 cut(s) 573, 663, 786
BseNI ACTGG 1 cut(s) 823
BseRI GAGGAG 1 cut(s) 668
BseSI GKGCMC 2 cut(s) 253, 284
BseXI GCAGC 3 cut(s) 353, 581, 802
BsgI GTGCAG 1 cut(s) 360
BshFI GGCC 6 cut(s) 239, 251, 282, 411, 557, 791
BshVI ATCGAT 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 600
BsiHKCI CYCGRG 3 cut(s) 137, 246, 261
BsiSI CCGG 4 cut(s) 247, 254, 262, 792
BslI CCNNNNNNNGG 4 cut(s) 246, 253, 368, 407
BsmAI GTCTC 2 cut(s) 73, 775
BsmBI CGTCTC 1 cut(s) 73
BsnI GGCC 6 cut(s) 239, 251, 282, 411, 557, 791
Bso31I GGTCTC 1 cut(s) 775
BsoBI CYCGRG 3 cut(s) 137, 246, 261
Bsp120I GGGCCC 2 cut(s) 249, 280
Bsp1286I GDGCHC 3 cut(s) 253, 284, 600
Bsp143I GATC 3 cut(s) 13, 346, 457
Bsp19I CCATGG 1 cut(s) 276
BspANI GGCC 6 cut(s) 239, 251, 282, 411, 557, 791
BspCNI CTCAG 3 cut(s) 572, 662, 785
BspDI ATCGAT 1 cut(s) 24
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 4 cut(s) 251, 252, 282, 283
BspTI CTTAAG 1 cut(s) 671
BspTNI GGTCTC 1 cut(s) 775
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 1 cut(s) 823
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 6 cut(s) 245, 246, 252, 261, 276, 368
BssMI GATC 3 cut(s) 13, 346, 457
BssNAI GTATAC 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 276
Bst1107I GTATAC 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 2 cut(s) 215, 808
BstAFI CTTAAG 1 cut(s) 671
BstC8I GCNNGC 1 cut(s) 793
BstDEI CTNAG 6 cut(s) 432, 559, 649, 772, 778, 834
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 3 cut(s) 181, 296, 397
BstKTI GATC 3 cut(s) 16, 349, 460
BstMAI GTCTC 2 cut(s) 73, 775
BstMBI GATC 3 cut(s) 13, 346, 457
BstMWI GCNNNNNNNGC 5 cut(s) 203, 257, 316, 683, 788
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 1 cut(s) 429
BstSCI CCNGG 6 cut(s) 245, 246, 252, 260, 261, 367
BstSLI GKGCMC 2 cut(s) 253, 284
BstV1I GCAGC 3 cut(s) 353, 581, 802
BstV2I GAAGAC 1 cut(s) 603
BstZ17I GTATAC 1 cut(s) 621
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 6 cut(s) 239, 251, 282, 411, 557, 791
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 3 cut(s) 181, 296, 397
Cac8I GCNNGC 1 cut(s) 793
CciI TCATGA 1 cut(s) 288
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 4 cut(s) 249, 250, 280, 281
Cfr9I CCCGGG 2 cut(s) 246, 261
ClaI ATCGAT 1 cut(s) 24
CviAII CATG 7 cut(s) 143, 241, 277, 289, 413, 426, 796
DdeI CTNAG 6 cut(s) 432, 559, 649, 772, 778, 834
DpnI GATC 3 cut(s) 15, 348, 459
DpnII GATC 3 cut(s) 13, 346, 457
EaeI YGGCCR 3 cut(s) 237, 409, 789
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 2 cut(s) 253, 284
Eco31I GGTCTC 1 cut(s) 775
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 3 cut(s) 137, 246, 261
EcoO109I RGGNCCY 2 cut(s) 250, 281
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 2 cut(s) 253, 284
ErhI CCWWGG 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 7 cut(s) 146, 244, 280, 292, 416, 429, 799
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FatI CATG 7 cut(s) 142, 240, 276, 288, 412, 425, 795
FbaI TGATCA 2 cut(s) 13, 457
FblI GTMKAC 1 cut(s) 620
Fnu4HI GCNGC 3 cut(s) 342, 570, 816
FokI GGATG 3 cut(s) 188, 283, 404
FriOI GRGCYC 2 cut(s) 253, 284
Fsp4HI GCNGC 3 cut(s) 342, 570, 816
FspBI CTAG 4 cut(s) 386, 537, 566, 683
GluI GCNGC 3 cut(s) 342, 570, 816
GsuI CTGGAG 2 cut(s) 75, 584
HaeIII GGCC 6 cut(s) 239, 251, 282, 411, 557, 791
HapII CCGG 4 cut(s) 247, 254, 262, 792
Hin1II CATG 7 cut(s) 146, 244, 280, 292, 416, 429, 799
HindIII AAGCTT 2 cut(s) 317, 471
HinfI GANTC 4 cut(s) 63, 608, 728, 739
HpaII CCGG 4 cut(s) 247, 254, 262, 792
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 621
Hpy188I TCNGA 6 cut(s) 73, 447, 562, 585, 652, 775
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 621
HpyAV CCTTC 3 cut(s) 544, 686, 697
HpyCH4III ACNGT 2 cut(s) 215, 808
HpyCH4V TGCA 4 cut(s) 179, 341, 425, 629
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 257, 316, 683, 788
HpyF3I CTNAG 6 cut(s) 432, 559, 649, 772, 778, 834
Hsp92II CATG 7 cut(s) 146, 244, 280, 292, 416, 429, 799
KroI GCCGGC 1 cut(s) 791
KroNI GCCGGC 1 cut(s) 793
Ksp22I TGATCA 2 cut(s) 13, 457
Kzo9I GATC 3 cut(s) 13, 346, 457
LmnI GCTCC 2 cut(s) 603, 696
Lsp1109I GCAGC 3 cut(s) 353, 581, 802
LweI GCATC 7 cut(s) 115, 166, 184, 313, 382, 406, 616
MaeI CTAG 4 cut(s) 386, 537, 566, 683
MaeIII GTNAC 5 cut(s) 36, 43, 265, 736, 745
MalI GATC 3 cut(s) 15, 348, 459
MboI GATC 3 cut(s) 13, 346, 457
MboII GAAGA 4 cut(s) 156, 181, 598, 603
MhlI GDGCHC 3 cut(s) 253, 284, 600
MlsI TGGCCA 2 cut(s) 239, 411
MluCI AATT 5 cut(s) 219, 488, 576, 639, 660
MluNI TGGCCA 2 cut(s) 239, 411
MlyI GAGTC 2 cut(s) 617, 733
MnlI CCTC 9 cut(s) 218, 504, 529, 568, 646, 658, 712, 760, 793
Mox20I TGGCCA 2 cut(s) 239, 411
MroNI GCCGGC 1 cut(s) 791
MscI TGGCCA 2 cut(s) 239, 411
MseI TTAA 2 cut(s) 305, 672
Msp20I TGGCCA 2 cut(s) 239, 411
MspA1I CMGCKG 1 cut(s) 344
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 4 cut(s) 247, 254, 262, 792
MspR9I CCNGG 6 cut(s) 247, 248, 254, 262, 263, 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 5 cut(s) 203, 257, 316, 683, 788
NaeI GCCGGC 1 cut(s) 793
NciI CCSGG 5 cut(s) 247, 248, 254, 262, 263
NcoI CCATGG 1 cut(s) 276
NdeII GATC 3 cut(s) 13, 346, 457
NgoMIV GCCGGC 1 cut(s) 791
NlaIII CATG 7 cut(s) 146, 244, 280, 292, 416, 429, 799
NlaIV GGNNCC 4 cut(s) 251, 252, 282, 283
NmuCI GTSAC 3 cut(s) 36, 265, 736
NspI RCATGY 1 cut(s) 429
PaeR7I CTCGAG 1 cut(s) 137
PagI TCATGA 1 cut(s) 288
PdiI GCCGGC 1 cut(s) 793
PfeI GAWTC 2 cut(s) 63, 728
PflMI CCANNNNNTGG 2 cut(s) 368, 407
PkrI GCNGC 3 cut(s) 343, 571, 817
PleI GAGTC 2 cut(s) 616, 733
PpsI GAGTC 2 cut(s) 616, 733
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 4 cut(s) 251, 252, 282, 283
PspOMI GGGCCC 2 cut(s) 249, 280
PspPI GGNCC 4 cut(s) 249, 250, 280, 281
PspXI VCTCGAGB 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 344
SaqAI TTAA 2 cut(s) 305, 672
SatI GCNGC 3 cut(s) 342, 570, 816
Sau3AI GATC 3 cut(s) 13, 346, 457
Sau96I GGNCC 4 cut(s) 249, 250, 280, 281
SchI GAGTC 2 cut(s) 617, 733
ScrFI CCNGG 6 cut(s) 247, 248, 254, 262, 263, 369
SduI GDGCHC 3 cut(s) 253, 284, 600
SfaNI GCATC 7 cut(s) 115, 166, 184, 313, 382, 406, 616
Sfr274I CTCGAG 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 137
SmaI CCCGGG 2 cut(s) 248, 263
SmlI CTYRAG 3 cut(s) 137, 671, 741
SmoI CTYRAG 3 cut(s) 137, 671, 741
Sse9I AATT 5 cut(s) 219, 488, 576, 639, 660
SspMI CTAG 4 cut(s) 386, 537, 566, 683
StyD4I CCNGG 6 cut(s) 245, 246, 252, 260, 261, 367
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 215, 808
TaqI TCGA 6 cut(s) 24, 138, 167, 192, 356, 731
TasI AATT 5 cut(s) 219, 488, 576, 639, 660
TfiI GAWTC 2 cut(s) 63, 728
Tru1I TTAA 2 cut(s) 305, 672
Tru9I TTAA 2 cut(s) 305, 672
TseFI GTSAC 3 cut(s) 36, 265, 736
TseI GCWGC 3 cut(s) 341, 569, 815
Tsp45I GTSAC 3 cut(s) 36, 265, 736
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 453
TspMI CCCGGG 2 cut(s) 246, 261
Van91I CCANNNNNTGG 2 cut(s) 368, 407
Vha464I CTTAAG 1 cut(s) 671
XapI RAATTY 1 cut(s) 639
XceI RCATGY 1 cut(s) 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XhoI CTCGAG 1 cut(s) 137
XmaI CCCGGG 2 cut(s) 246, 261
XmiI GTMKAC 1 cut(s) 620
XspI CTAG 4 cut(s) 386, 537, 566, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.