Rh6DG045700

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000538
Physical Location & Seq
Reverse (-)
4827220 .. 4827471
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG045700.1

Sequence Viewer

Length: 252 bp
ATGATCAAAGAGTTGGAAGAACAAATCAAAAGGTTGGAAGCTTGTTTAGCCACAGAAGAGAGCAACAGGTCAAAGATTGATGAGGCTATCGATTCCATCGAGAAACAAGTCACCACCGCGAGAGATGGATTGGTCTCGGAGTTGGCACAAGTGTCTTCCATGGAAGGATCGACCCAAGCCGCTAACAAGTTAGTAGCTCGAAAACAGTCGGACTTGGATAACCTAAAGCTGAGTTTTACTAAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

83

Amino Acids

9.2

Weight (kDa)

4.95

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 119
AciI CCGC 2 cut(s) 117, 180
AclWI GGATC 1 cut(s) 175
AluBI AGCT 3 cut(s) 41, 197, 229
AluI AGCT 3 cut(s) 41, 197, 229
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 147
BccI CCATC 2 cut(s) 104, 119
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 139
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 119
BshVI ATCGAT 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 139
Bso31I GGTCTC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 3, 167
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 2 cut(s) 117, 180
BspCNI CTCAG 1 cut(s) 222
BspDI ATCGAT 1 cut(s) 90
BspFNI CGCG 1 cut(s) 119
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 3, 167
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 230, 240
BstDSI CCRYGG 1 cut(s) 159
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 2 cut(s) 6, 170
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 3, 167
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstUI CGCG 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 147
Bsu15I ATCGAT 1 cut(s) 90
BsuTUI ATCGAT 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 90
CviAII CATG 2 cut(s) 160, 249
CviJI RGCY 6 cut(s) 41, 50, 86, 179, 197, 229
CviKI_1 RGCY 6 cut(s) 41, 50, 86, 179, 197, 229
DdeI CTNAG 2 cut(s) 230, 240
DpnI GATC 2 cut(s) 5, 169
DpnII GATC 2 cut(s) 3, 167
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 2 cut(s) 163, 252
FaiI YATR 2 cut(s) 161, 250
FatI CATG 2 cut(s) 159, 248
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 163, 252
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 1 cut(s) 92
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 139, 211
Hpy188III TCNNGA 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 230, 240
Hsp92II CATG 2 cut(s) 163, 252
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 167
LpnPI CCDG 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 109
MalI GATC 2 cut(s) 5, 169
MboI GATC 2 cut(s) 3, 167
MboII GAAGA 3 cut(s) 29, 68, 147
MmeI TCCRAC 2 cut(s) 15, 189
MnlI CCTC 1 cut(s) 76
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 47
NcoI CCATGG 1 cut(s) 159
NdeII GATC 2 cut(s) 3, 167
NlaIII CATG 2 cut(s) 163, 252
NmuCI GTSAC 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 181
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 3, 167
SetI ASST 6 cut(s) 35, 43, 71, 199, 225, 231
SsiI CCGC 2 cut(s) 117, 180
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 207
TaqI TCGA 4 cut(s) 90, 99, 170, 199
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 92
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.