Rmu_sc0005439.1_g000021

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005439.1
OG0000538
Physical Location & Seq
Forward (+)
86928 .. 87292
365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005439.1_g000021.1.cds

Sequence Viewer

Length: 288 bp
atgattgttgatgttattgatctcttgtctaagccatttcctagcatcaatgttcatccacaattggatgctcagtcatttgtaggcaaggatgagcttgcattggctaaggagggactgcaaaagatctttgatttggggttaatagctgtagctgatcccaaagtgcaagaagagtgcaatctttccgaggaaatgtctgctttcgtcaaagctcaagatgagttgaaggtggcctcagacttatcagcctcaatcactcagaagaagtttgtggcgcggcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

95

Amino Acids

10.4

Weight (kDa)

4.7

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 280
AciI CCGC 1 cut(s) 280
AclWI GGATC 1 cut(s) 152
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 4 cut(s) 97, 149, 155, 215
AluI AGCT 4 cut(s) 97, 149, 155, 215
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 234
AspLEI GCGC 1 cut(s) 280
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 150
BglII AGATCT 1 cut(s) 126
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
BmsI GCATC 2 cut(s) 54, 58
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 3 cut(s) 55, 73, 97
BseMII CTCAG 3 cut(s) 86, 252, 275
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 1 cut(s) 236
BslFI GGGAC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 3 cut(s) 19, 126, 157
BspACI CCGC 1 cut(s) 280
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 3 cut(s) 85, 251, 274
BspFNI CGCG 1 cut(s) 280
BspPI GGATC 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 3 cut(s) 19, 126, 157
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 5 cut(s) 30, 72, 108, 238, 261
BstF5I GGATG 3 cut(s) 55, 73, 97
BstFNI CGCG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 3 cut(s) 22, 129, 160
BstMBI GATC 3 cut(s) 19, 126, 157
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 3 cut(s) 55, 73, 97
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 280
CviJI RGCY 8 cut(s) 34, 97, 107, 149, 155, 215, 236, 251
CviKI_1 RGCY 8 cut(s) 34, 97, 107, 149, 155, 215, 236, 251
DdeI CTNAG 5 cut(s) 30, 72, 108, 238, 261
DpnI GATC 3 cut(s) 21, 128, 159
DpnII GATC 3 cut(s) 19, 126, 157
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
FaqI GGGAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 3 cut(s) 42, 80, 104
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 281
HaeIII GGCC 1 cut(s) 236
HhaI GCGC 1 cut(s) 280
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
Hpy188I TCNGA 3 cut(s) 190, 241, 264
Hpy188III TCNNGA 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 101, 121, 169, 180
HpyF3I CTNAG 5 cut(s) 30, 72, 108, 238, 261
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 3 cut(s) 19, 126, 157
LweI GCATC 2 cut(s) 54, 58
MaeI CTAG 1 cut(s) 42
MalI GATC 3 cut(s) 21, 128, 159
MboI GATC 3 cut(s) 19, 126, 157
MboII GAAGA 2 cut(s) 185, 277
MfeI CAATTG 1 cut(s) 62
MflI RGATCY 1 cut(s) 126
MluCI AATT 1 cut(s) 62
MnlI CCTC 4 cut(s) 106, 184, 247, 262
MseI TTAA 1 cut(s) 143
MunI CAATTG 1 cut(s) 62
MvnI CGCG 1 cut(s) 280
NdeII GATC 3 cut(s) 19, 126, 157
PkrI GCNGC 1 cut(s) 282
PsuI RGATCY 1 cut(s) 126
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 3 cut(s) 19, 126, 157
SetI ASST 5 cut(s) 99, 151, 157, 217, 234
SfaNI GCATC 2 cut(s) 54, 58
SfcI CTRYAG 1 cut(s) 150
SgeI CNNG 7 cut(s) 37, 54, 100, 110, 182, 202, 230
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 1 cut(s) 62
SsiI CCGC 1 cut(s) 280
SspMI CTAG 1 cut(s) 42
TasI AATT 1 cut(s) 62
TauI GCSGC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 44
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.