Rorug05G0543600

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000538
Physical Location & Seq
Reverse (-)
73151587 .. 73152952
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0543600.1

Sequence Viewer

Length: 1014 bp
ATGGCTGAAATGAAAGATTGCCACCACCACGTAGTGGAAATCCCGGTTGACGAAGAGCACCAACAGAAGCTCTCGTCCTCCATGACCATCATTTCGGCAATCCAACACCACCCATTGATGGAAATCTCCGAGAGCCCCGGCCATTTGCTTCTTCTCAAGCTCTGGCGAAGAGAAGAAGACCTCTTCGGCCGGCGGATCGCTCGGAGGGAGACCCGAATGGATCTCATCCGCCGCGAAATATTTCAACTCTGTTGCTTCTTCTTGATATTTCATGCCTTTTTCTTGACCATCTTGTTCACTTCTTCGTTAAACTCCGAGGAGGGGAGTTGCCAGAAGTGGTGGATTCCGAGCATTCTTTCGGTTTCGACTTCTGTTGTGTTTGTGGTTCTTGTGCAGGTGAATCTGTGGAGGTACTGGAAGGTGTGGGGACAGTTGCAGAGGGAGAAGATTGAGAATCGAGCTCTGGTGAGGTGTATTCAGGAGTTGAGGATGAAGGGAGCGAGCTTTGATCTGTCCAAGGAGCCGCAGAGTGGGAAGAGGATGAAGAGCTCCAGTGTCGAGATCAAGTGGAAGCCGATCACTTGGTGCTCGCAGAACTTGATCACCATCTGCCTTGTTTGCTTCGCAGGTTTGTTTGGTGTTTCCTGCATCCAAATTGATGCTTTGCAGCGGCTTCTGAGCTTGGGGAGATTCTTAGTTTATCTTCATCTTTCTAAGATTTATGATCTGCGGCAACTTGTGAGCTCAAGGATCTGCGGCGACTTTGAGCTCGAGGAGTTTCCTTTTGATGATCTTTCTCAAGGTATTGTAACCGCTGTAAATTTGAAAGATATTGCAACTGAGAAGGGAAGCATTGCGATTCATTGCAAAGTAAAAAGTAACAAATCATGCCAATATCATGCCAATTGCAAGAGCATCATTATGTTTCGAAATGAGATTCTGCTTGCTCCTGAAGAAGTGCTTTGCAAGAGCATCATTATGTTTCAAAATGAGATTCTGCTTGCTCGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

337

Amino Acids

39.07

Weight (kDa)

8.49

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 2 cut(s) 385, 617
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 1 cut(s) 234
AciI CCGC 8 cut(s) 193, 229, 232, 524, 670, 730, 756, 813
AclWI GGATC 3 cut(s) 203, 228, 758
AcoI YGGCCR 2 cut(s) 139, 187
AcsI RAATTY 1 cut(s) 820
AcuI CTGAAG 1 cut(s) 972
AdeI CACNNNGTG 2 cut(s) 34, 585
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
AgsI TTSAA 3 cut(s) 245, 826, 986
AluBI AGCT 8 cut(s) 70, 160, 461, 504, 549, 681, 744, 769
AluI AGCT 8 cut(s) 70, 160, 461, 504, 549, 681, 744, 769
Alw21I GWGCWC 6 cut(s) 60, 463, 551, 590, 746, 771
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 3 cut(s) 203, 228, 758
Ama87I CYCGRG 1 cut(s) 770
AoxI GGCC 2 cut(s) 139, 187
ApeKI GCWGC 1 cut(s) 667
ApoI RAATTY 1 cut(s) 820
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
Asp700I GAANNNNTTC 1 cut(s) 240
AsuC2I CCSGG 2 cut(s) 44, 138
AsuHPI GGTGA 3 cut(s) 409, 478, 595
AsuII TTCGAA 1 cut(s) 928
AvaI CYCGRG 1 cut(s) 770
BanII GRGCYC 5 cut(s) 137, 463, 551, 746, 771
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 6 cut(s) 60, 463, 551, 590, 746, 771
BbvI GCAGC 1 cut(s) 679
BccI CCATC 4 cut(s) 95, 112, 296, 614
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 2 cut(s) 44, 138
BcoDI GTCTC 1 cut(s) 203
BfuAI ACCTGC 2 cut(s) 385, 617
BisI GCNGC 6 cut(s) 232, 524, 668, 671, 731, 757
BlsI GCNGC 6 cut(s) 233, 525, 669, 672, 732, 758
Bme1390I CCNGG 2 cut(s) 44, 138
BmeT110I CYCGRG 1 cut(s) 770
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 2 cut(s) 44, 138
BmsI GCATC 4 cut(s) 649, 657, 924, 981
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 535
Bpu14I TTCGAA 1 cut(s) 928
BpuEI CTTGAG 3 cut(s) 140, 730, 783
BpuMI CCSGG 2 cut(s) 44, 138
BsaAI YACGTR 1 cut(s) 31
BsaBI GATNNNNATC 2 cut(s) 122, 605
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 3 cut(s) 136, 315, 516
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 419, 552
Bse3DI GCAATG 2 cut(s) 852, 862
Bse8I GATNNNNATC 2 cut(s) 122, 605
BseDI CCNNGG 3 cut(s) 136, 315, 516
BseGI GGATG 4 cut(s) 225, 495, 546, 648
BseJI GATNNNNATC 2 cut(s) 122, 605
BseLI CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
BseMI GCAATG 2 cut(s) 852, 862
BseMII CTCAG 2 cut(s) 668, 831
BseNI ACTGG 2 cut(s) 419, 552
BseRI GAGGAG 2 cut(s) 332, 788
BseX3I CGGCCG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 679
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 141, 189
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 6 cut(s) 60, 463, 551, 590, 746, 771
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 3 cut(s) 44, 138, 190
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 2 cut(s) 141, 189
Bso31I GGTCTC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 770
Bsp119I TTCGAA 1 cut(s) 928
Bsp1286I GDGCHC 7 cut(s) 60, 137, 463, 551, 590, 746, 771
Bsp143I GATC 9 cut(s) 195, 220, 508, 561, 576, 600, 724, 750, 790
BspACI CCGC 8 cut(s) 193, 229, 232, 524, 670, 730, 756, 813
BspANI GGCC 2 cut(s) 141, 189
BspCNI CTCAG 2 cut(s) 669, 832
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 522
BspMI ACCTGC 2 cut(s) 385, 617
BspPI GGATC 3 cut(s) 203, 228, 758
BspQI GCTCTTC 2 cut(s) 48, 539
BspT104I TTCGAA 1 cut(s) 928
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 852, 862
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 2 cut(s) 419, 552
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 3 cut(s) 136, 315, 516
BssMI GATC 9 cut(s) 195, 220, 508, 561, 576, 600, 724, 750, 790
BssT1I CCWWGG 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 432
Bst6I CTCTTC 5 cut(s) 48, 163, 188, 530, 539
BstBAI YACGTR 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 928
BstC8I GCNNGC 6 cut(s) 191, 502, 590, 945, 1002, 1006
BstDEI CTNAG 4 cut(s) 677, 694, 714, 840
BstF5I GGATG 4 cut(s) 225, 495, 546, 648
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 9 cut(s) 198, 223, 511, 564, 579, 603, 727, 753, 793
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 9 cut(s) 195, 220, 508, 561, 576, 600, 724, 750, 790
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 618
BstSCI CCNGG 2 cut(s) 42, 136
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 679
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 220, 750
BstYI RGATCY 2 cut(s) 220, 750
BstZI CGGCCG 1 cut(s) 187
BsuRI GGCC 2 cut(s) 141, 189
BtsCI GGATG 4 cut(s) 225, 495, 546, 648
BtsIMutI CAGTG 1 cut(s) 559
BveI ACCTGC 2 cut(s) 385, 617
Cac8I GCNNGC 6 cut(s) 191, 502, 590, 945, 1002, 1006
Cfr10I RCCGGY 1 cut(s) 189
Csp6I GTAC 1 cut(s) 412
CviAII CATG 4 cut(s) 82, 272, 888, 899
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 4 cut(s) 677, 694, 714, 840
DpnI GATC 9 cut(s) 197, 222, 510, 563, 578, 602, 726, 752, 792
DpnII GATC 9 cut(s) 195, 220, 508, 561, 576, 600, 724, 750, 790
DraIII CACNNNGTG 2 cut(s) 34, 585
EaeI YGGCCR 2 cut(s) 139, 187
EagI CGGCCG 1 cut(s) 187
Eam1104I CTCTTC 5 cut(s) 48, 163, 188, 530, 539
EarI CTCTTC 5 cut(s) 48, 163, 188, 530, 539
EciI GGCGGA 2 cut(s) 208, 218
Ecl136II GAGCTC 4 cut(s) 461, 549, 744, 769
EclXI CGGCCG 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 516
Eco24I GRGCYC 5 cut(s) 137, 463, 551, 746, 771
Eco31I GGTCTC 1 cut(s) 203
Eco52I CGGCCG 1 cut(s) 187
Eco53kI GAGCTC 4 cut(s) 461, 549, 744, 769
Eco57I CTGAAG 1 cut(s) 972
Eco88I CYCGRG 1 cut(s) 770
EcoICRI GAGCTC 4 cut(s) 461, 549, 744, 769
EcoT14I CCWWGG 1 cut(s) 516
EcoT38I GRGCYC 5 cut(s) 137, 463, 551, 746, 771
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 4 cut(s) 85, 275, 891, 902
FaiI YATR 7 cut(s) 83, 273, 723, 889, 900, 923, 980
FalI AAGNNNNNCTT 2 cut(s) 945, 977
FaqI GGGAC 1 cut(s) 441
FatI CATG 4 cut(s) 81, 271, 887, 898
FbaI TGATCA 1 cut(s) 600
Fnu4HI GCNGC 6 cut(s) 232, 524, 668, 671, 731, 757
FokI GGATG 4 cut(s) 212, 502, 553, 635
FriOI GRGCYC 5 cut(s) 137, 463, 551, 746, 771
Fsp4HI GCNGC 6 cut(s) 232, 524, 668, 671, 731, 757
GluI GCNGC 6 cut(s) 232, 524, 668, 671, 731, 757
GsuI CTGGAG 1 cut(s) 535
HaeIII GGCC 2 cut(s) 141, 189
HapII CCGG 3 cut(s) 44, 138, 190
Hin1II CATG 4 cut(s) 85, 275, 891, 902
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 7 cut(s) 343, 400, 454, 690, 859, 937, 994
HpaII CCGG 3 cut(s) 44, 138, 190
HphI GGTGA 3 cut(s) 409, 478, 595
Hpy166II GTNNAC 2 cut(s) 49, 297
Hpy188I TCNGA 5 cut(s) 130, 204, 316, 348, 678
Hpy188III TCNNGA 6 cut(s) 262, 283, 479, 559, 950, 1011
Hpy8I GTNNAC 2 cut(s) 49, 297
HpyAV CCTTC 3 cut(s) 412, 487, 838
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 8 cut(s) 394, 436, 648, 667, 836, 867, 909, 966
HpyF10VI GCNNNNNNNGC 1 cut(s) 618
HpyF3I CTNAG 4 cut(s) 677, 694, 714, 840
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 4 cut(s) 85, 275, 891, 902
KroI GCCGGC 1 cut(s) 189
KroNI GCCGGC 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 9 cut(s) 195, 220, 508, 561, 576, 600, 724, 750, 790
LguI GCTCTTC 2 cut(s) 48, 539
LmnI GCTCC 5 cut(s) 497, 520, 554, 952, 1013
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 4 cut(s) 649, 657, 924, 981
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 808, 878
MalI GATC 9 cut(s) 197, 222, 510, 563, 578, 602, 726, 752, 792
MboI GATC 9 cut(s) 195, 220, 508, 561, 576, 600, 724, 750, 790
MfeI CAATTG 1 cut(s) 904
MflI RGATCY 2 cut(s) 220, 750
MhlI GDGCHC 7 cut(s) 60, 137, 463, 551, 590, 746, 771
MluCI AATT 3 cut(s) 654, 820, 904
MmeI TCCRAC 1 cut(s) 127
MroNI GCCGGC 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 2 cut(s) 920, 977
MspA1I CMGCKG 2 cut(s) 670, 815
MspI CCGG 3 cut(s) 44, 138, 190
MspR9I CCNGG 2 cut(s) 44, 138
MunI CAATTG 1 cut(s) 904
Mva1269I GAATGC 1 cut(s) 351
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 618
NaeI GCCGGC 1 cut(s) 191
NciI CCSGG 2 cut(s) 44, 138
NdeII GATC 9 cut(s) 195, 220, 508, 561, 576, 600, 724, 750, 790
NgoMIV GCCGGC 1 cut(s) 189
NlaIII CATG 4 cut(s) 85, 275, 891, 902
NlaIV GGNNCC 1 cut(s) 522
NspV TTCGAA 1 cut(s) 928
PaeR7I CTCGAG 1 cut(s) 770
PaqCI CACCTGC 1 cut(s) 385
PciSI GCTCTTC 2 cut(s) 48, 539
PctI GAATGC 1 cut(s) 351
PdiI GCCGGC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 7 cut(s) 343, 400, 454, 690, 859, 937, 994
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 6 cut(s) 233, 525, 669, 672, 732, 758
Ppu21I YACGTR 1 cut(s) 31
Psp124BI GAGCTC 4 cut(s) 463, 551, 746, 771
PspN4I GGNNCC 1 cut(s) 522
PspXI VCTCGAGB 1 cut(s) 770
PsuI RGATCY 2 cut(s) 220, 750
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 2 cut(s) 920, 977
SacI GAGCTC 4 cut(s) 463, 551, 746, 771
SapI GCTCTTC 2 cut(s) 48, 539
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 6 cut(s) 232, 524, 668, 671, 731, 757
Sau3AI GATC 9 cut(s) 195, 220, 508, 561, 576, 600, 724, 750, 790
ScrFI CCNGG 2 cut(s) 44, 138
SduI GDGCHC 7 cut(s) 60, 137, 463, 551, 590, 746, 771
SfaNI GCATC 4 cut(s) 649, 657, 924, 981
Sfr274I CTCGAG 1 cut(s) 770
SfuI TTCGAA 1 cut(s) 928
SlaI CTCGAG 1 cut(s) 770
SmiMI CAYNNNNRTG 2 cut(s) 920, 977
SmlI CTYRAG 4 cut(s) 155, 745, 770, 798
SmoI CTYRAG 4 cut(s) 155, 745, 770, 798
Sse9I AATT 3 cut(s) 654, 820, 904
SsiI CCGC 8 cut(s) 193, 229, 232, 524, 670, 730, 756, 813
SspI AATATT 1 cut(s) 240
SstI GAGCTC 4 cut(s) 463, 551, 746, 771
StyD4I CCNGG 2 cut(s) 42, 136
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 1 cut(s) 432
TaiI ACGT 1 cut(s) 33
TaqI TCGA 5 cut(s) 365, 457, 558, 771, 928
TasI AATT 3 cut(s) 654, 820, 904
TauI GCSGC 5 cut(s) 234, 526, 673, 733, 759
TfiI GAWTC 7 cut(s) 343, 400, 454, 690, 859, 937, 994
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 1 cut(s) 559
TseI GCWGC 1 cut(s) 667
TspDTI ATGAA 6 cut(s) 26, 260, 506, 557, 695, 851
TspRI CASTG 1 cut(s) 559
Van91I CCANNNNNTGG 1 cut(s) 34
XapI RAATTY 1 cut(s) 820
XhoI CTCGAG 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.