Rroxscaffold_7G00212080

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000538
Physical Location & Seq
Forward (+)
62539191 .. 62541200
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212080.1

Sequence Viewer

Length: 1086 bp
ATGTCAAGCGCTCTCTCACTCTCTCTCTCTCTTTGGGTTTGGCGACGGTCCGGCTTTGGATCTCCCACCGGCGGCTTCGACGGCTTGCGGGTGGTCAACAGCTGGGCACGGTGGCTCTACCAACATGGCGGCATGTCATCACTAGTGGACATCGGGCTGCTGGTCTGGGTGCCCCCTGAGGATTCTTTCGGGGGCAGAGGCCTGGGCCTGGGCCTGGTTTCTGGTTGCCCTGAGGAATTCTTCAGGGGCTTGAAATTAGGCCTGTGCTGTGTTGATCATAAAGTGATTCCACAACTGAAGGCTGCACTGTTATTGTCAAATGCCTCCAAGGATCGTTCCTCATCAACCAAGCTAGAGAACCTCGATGGTCTAATTGCTGATGTAGATGATCTCATCTCTAAATTTTCTGGCTTTGATCTTCACCAACTGGATACTCACTTCTGTGATGAACTTGCAATGGCCAAGGAGGGACTCCAAAAGATATTTGACTGTGACTTGGAAGCTTTAGCTGATCCCAAAGTCCAAGAGGAGTTCCTTACTCATTCAGCCACACTTATTTCTGATGATTCTTGCCCAATAGACTTGAAGGTTAAACTTTTATCTTTCCAATCTAATCTCTCAGAGGAGATGTCTGCTTTCGTGGAAGCTCAACATGAGTTGAATAAAGTGTCAGACCTATCAGCTTCACTTGCTGGGCAAAAGTTTGTGCTTGAATCGACCACTTCAAAGTATGCCGAAGTGAAAGCACTATTTCTTGCAGCAGACAAGAAACATGCCAAACTTACTGCCAAGATCAATGCTGCGTCGAAGGCAGGAATTGAATTGTTTGAAGATTTAGCCATTGTTCGGATGCGAAGGGCTGAGTTTGATCGAGAGAAATTGGGTACCATTGAGGGAGTAATTACCACTGCTAGAGATAGATTTGTCTCAGACTCTTCGAAGCTTTCTACAATAAAGGGATTGACCAATGCAGCTGCCCTTTTAGTCACTCGACGAAAGTCAGCCTGGAATAGCTTAAGGATTACTTACTCAAATTTTGCATCACTTGGTCTGCATGATGAGGAAACTTATTTGGTGGGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

361

Amino Acids

39.5

Weight (kDa)

5.69

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 884
AccB1I GGYRCC 2 cut(s) 169, 884
AciI CCGC 3 cut(s) 72, 88, 129
AclWI GGATC 3 cut(s) 67, 339, 506
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 3 cut(s) 236, 401, 1033
AcuI CTGAAG 2 cut(s) 226, 317
AfaI GTAC 1 cut(s) 886
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 4 cut(s) 71, 208, 214, 846
AflII CTTAAG 1 cut(s) 1015
AgsI TTSAA 7 cut(s) 253, 586, 661, 713, 726, 821, 830
AhlI ACTAGT 1 cut(s) 142
AjnI CCWGG 4 cut(s) 201, 207, 213, 1004
AleI CACNNNNGTG 1 cut(s) 441
AluBI AGCT 9 cut(s) 102, 352, 503, 509, 647, 683, 943, 974, 1014
AluI AGCT 9 cut(s) 102, 352, 503, 509, 647, 683, 943, 974, 1014
Alw26I GTCTC 1 cut(s) 931
AlwI GGATC 3 cut(s) 67, 339, 506
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 5 cut(s) 199, 205, 211, 259, 459
ApeKI GCWGC 6 cut(s) 157, 302, 758, 800, 971, 974
ApoI RAATTY 3 cut(s) 236, 401, 1033
Asp718I GGTACC 1 cut(s) 884
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 48, 205, 211
AsuHPI GGTGA 1 cut(s) 413
AsuII TTCGAA 1 cut(s) 938
AvaII GGWCC 1 cut(s) 48
AxyI CCTNAGG 2 cut(s) 177, 231
BaeGI GKGCMC 2 cut(s) 109, 174
BalI TGGCCA 1 cut(s) 461
BanI GGYRCC 2 cut(s) 169, 884
BbvI GCAGC 6 cut(s) 144, 289, 770, 787, 961, 983
BccI CCATC 1 cut(s) 359
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 4 cut(s) 203, 209, 215, 1006
BciVI GTATCC 1 cut(s) 424
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 931
BcuI ACTAGT 1 cut(s) 142
BfaI CTAG 4 cut(s) 143, 353, 912, 1084
BfoI RGCGCY 1 cut(s) 12
BfrI CTTAAG 1 cut(s) 1015
BfuI GTATCC 1 cut(s) 424
BisI GCNGC 8 cut(s) 73, 130, 158, 303, 759, 801, 972, 975
BlsI GCNGC 8 cut(s) 74, 131, 159, 304, 760, 802, 973, 976
Bme1390I CCNGG 4 cut(s) 203, 209, 215, 1006
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 3 cut(s) 48, 205, 211
BmiI GGNNCC 2 cut(s) 171, 886
BmrFI CCNGG 4 cut(s) 203, 209, 215, 1006
BmsI GCATC 2 cut(s) 840, 1049
BoxI GACNNNNGTC 1 cut(s) 997
Bpu14I TTCGAA 1 cut(s) 938
BsaJI CCNNGG 4 cut(s) 202, 208, 327, 462
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 208, 214, 846
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 432
Bse21I CCTNAGG 2 cut(s) 177, 231
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 4 cut(s) 203, 209, 215, 1006
BseDI CCNNGG 4 cut(s) 202, 208, 327, 462
BseGI GGATG 1 cut(s) 855
BseLI CCNNNNNNNGG 4 cut(s) 71, 208, 214, 846
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 5 cut(s) 168, 222, 633, 852, 942
BseNI ACTGG 1 cut(s) 432
BseRI GAGGAG 2 cut(s) 542, 638
BseSI GKGCMC 2 cut(s) 109, 174
BseXI GCAGC 6 cut(s) 144, 289, 770, 787, 961, 983
BseYI CCCAGC 2 cut(s) 102, 692
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 5 cut(s) 201, 207, 213, 261, 461
BshNI GGYRCC 2 cut(s) 169, 884
BsiSI CCGG 2 cut(s) 51, 69
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 4 cut(s) 71, 208, 214, 846
BsmAI GTCTC 1 cut(s) 931
BsmFI GGGAC 1 cut(s) 483
BsnI GGCC 5 cut(s) 201, 207, 213, 261, 461
Bsp119I TTCGAA 1 cut(s) 938
Bsp1286I GDGCHC 2 cut(s) 109, 174
Bsp143I GATC 8 cut(s) 59, 274, 331, 388, 415, 511, 792, 868
BspACI CCGC 3 cut(s) 72, 88, 129
BspANI GGCC 5 cut(s) 201, 207, 213, 261, 461
BspCNI CTCAG 5 cut(s) 169, 223, 632, 853, 941
BspLI GGNNCC 2 cut(s) 171, 886
BspPI GGATC 3 cut(s) 67, 339, 506
BspT104I TTCGAA 1 cut(s) 938
BspT107I GGYRCC 2 cut(s) 169, 884
BspTI CTTAAG 1 cut(s) 1015
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 432
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 4 cut(s) 202, 208, 327, 462
BssMI GATC 8 cut(s) 59, 274, 331, 388, 415, 511, 792, 868
BssT1I CCWWGG 2 cut(s) 327, 462
Bst2UI CCWGG 4 cut(s) 203, 209, 215, 1006
Bst4CI ACNGT 4 cut(s) 48, 111, 309, 491
Bst6I CTCTTC 1 cut(s) 940
BstAFI CTTAAG 1 cut(s) 1015
BstBI TTCGAA 1 cut(s) 938
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 5 cut(s) 177, 231, 619, 861, 928
BstF5I GGATG 1 cut(s) 855
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 8 cut(s) 62, 277, 334, 391, 418, 514, 795, 871
BstMAI GTCTC 1 cut(s) 931
BstMBI GATC 8 cut(s) 59, 274, 331, 388, 415, 511, 792, 868
BstMWI GCNNNNNNNGC 3 cut(s) 81, 689, 809
BstNI CCWGG 4 cut(s) 203, 209, 215, 1006
BstNSI RCATGY 2 cut(s) 136, 776
BstPAI GACNNNNGTC 1 cut(s) 997
BstSCI CCNGG 4 cut(s) 201, 207, 213, 1004
BstSLI GKGCMC 2 cut(s) 109, 174
BstV1I GCAGC 6 cut(s) 144, 289, 770, 787, 961, 983
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
Bsu36I CCTNAGG 2 cut(s) 177, 231
BsuI GTATCC 1 cut(s) 424
BsuRI GGCC 5 cut(s) 201, 207, 213, 261, 461
BtsCI GGATG 1 cut(s) 855
BtsI GCAGTG 1 cut(s) 906
BtsIMutI CAGTG 2 cut(s) 305, 906
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 48, 205, 211
CpoI CGGWCCG 1 cut(s) 48
CseI GACGC 1 cut(s) 792
Csp6I GTAC 1 cut(s) 885
CspI CGGWCCG 1 cut(s) 48
CviAII CATG 5 cut(s) 125, 133, 653, 773, 1055
CviQI GTAC 1 cut(s) 885
DdeI CTNAG 5 cut(s) 177, 231, 619, 861, 928
DpnI GATC 8 cut(s) 61, 276, 333, 390, 417, 513, 794, 870
DpnII GATC 8 cut(s) 59, 274, 331, 388, 415, 511, 792, 868
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 940
EarI CTCTTC 1 cut(s) 940
Eco130I CCWWGG 2 cut(s) 327, 462
Eco147I AGGCCT 2 cut(s) 201, 261
Eco47I GGWCC 1 cut(s) 48
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 226, 317
Eco81I CCTNAGG 2 cut(s) 177, 231
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 4 cut(s) 201, 207, 213, 1004
EcoT14I CCWWGG 2 cut(s) 327, 462
ErhI CCWWGG 2 cut(s) 327, 462
FaeI CATG 5 cut(s) 128, 136, 656, 776, 1058
FaiI YATR 7 cut(s) 126, 134, 279, 654, 732, 774, 1056
FalI AAGNNNNNCTT 2 cut(s) 1009, 1041
FaqI GGGAC 1 cut(s) 483
FatI CATG 5 cut(s) 124, 132, 652, 772, 1054
FauI CCCGC 1 cut(s) 81
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 8 cut(s) 73, 130, 158, 303, 759, 801, 972, 975
FokI GGATG 1 cut(s) 862
Fsp4HI GCNGC 8 cut(s) 73, 130, 158, 303, 759, 801, 972, 975
FspBI CTAG 4 cut(s) 143, 353, 912, 1084
GlaI GCGC 1 cut(s) 10
GluI GCNGC 8 cut(s) 73, 130, 158, 303, 759, 801, 972, 975
GsaI CCCAGC 2 cut(s) 106, 696
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 5 cut(s) 201, 207, 213, 261, 461
HapII CCGG 2 cut(s) 51, 69
HgaI GACGC 1 cut(s) 792
HhaI GCGC 1 cut(s) 11
Hin1II CATG 5 cut(s) 128, 136, 656, 776, 1058
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 2 cut(s) 501, 941
HinfI GANTC 6 cut(s) 182, 286, 471, 566, 713, 932
HpaII CCGG 2 cut(s) 51, 69
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 2 cut(s) 97, 148
Hpy188I TCNGA 5 cut(s) 562, 622, 673, 849, 931
Hpy188III TCNNGA 1 cut(s) 872
Hpy8I GTNNAC 2 cut(s) 97, 148
Hpy99I CGWCG 4 cut(s) 48, 83, 808, 996
HpyAV CCTTC 4 cut(s) 292, 580, 802, 849
HpyCH4III ACNGT 4 cut(s) 48, 111, 309, 491
HpyCH4V TGCA 6 cut(s) 305, 455, 758, 971, 1040, 1054
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 689, 809
HpyF3I CTNAG 5 cut(s) 177, 231, 619, 861, 928
Hsp92II CATG 5 cut(s) 128, 136, 656, 776, 1058
HspAI GCGC 1 cut(s) 9
KpnI GGTACC 1 cut(s) 888
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 8 cut(s) 59, 274, 331, 388, 415, 511, 792, 868
Lsp1109I GCAGC 6 cut(s) 144, 289, 770, 787, 961, 983
LweI GCATC 2 cut(s) 840, 1049
MaeI CTAG 4 cut(s) 143, 353, 912, 1084
MaeIII GTNAC 2 cut(s) 491, 985
MalI GATC 8 cut(s) 61, 276, 333, 390, 417, 513, 794, 870
MboI GATC 8 cut(s) 59, 274, 331, 388, 415, 511, 792, 868
MboII GAAGA 4 cut(s) 232, 410, 842, 927
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 109, 174
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 9 cut(s) 236, 254, 372, 401, 816, 821, 878, 900, 1033
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 2 cut(s) 465, 926
Mox20I TGGCCA 1 cut(s) 461
MscI TGGCCA 1 cut(s) 461
MseI TTAA 2 cut(s) 591, 1016
MslI CAYNNNNRTG 1 cut(s) 441
Msp20I TGGCCA 1 cut(s) 461
MspA1I CMGCKG 2 cut(s) 102, 974
MspCI CTTAAG 1 cut(s) 1015
MspI CCGG 2 cut(s) 51, 69
MspR9I CCNGG 4 cut(s) 203, 209, 215, 1006
MvaI CCWGG 4 cut(s) 203, 209, 215, 1006
MwoI GCNNNNNNNGC 3 cut(s) 81, 689, 809
NdeII GATC 8 cut(s) 59, 274, 331, 388, 415, 511, 792, 868
NlaIII CATG 5 cut(s) 128, 136, 656, 776, 1058
NlaIV GGNNCC 2 cut(s) 171, 886
NmuCI GTSAC 2 cut(s) 491, 985
NspI RCATGY 2 cut(s) 136, 776
NspV TTCGAA 1 cut(s) 938
OliI CACNNNNGTG 1 cut(s) 441
PceI AGGCCT 2 cut(s) 201, 261
PfeI GAWTC 4 cut(s) 182, 286, 566, 713
PkrI GCNGC 8 cut(s) 74, 131, 159, 304, 760, 802, 973, 976
PleI GAGTC 2 cut(s) 465, 926
PpsI GAGTC 2 cut(s) 465, 926
PshAI GACNNNNGTC 1 cut(s) 997
Psp6I CCWGG 4 cut(s) 201, 207, 213, 1004
PspFI CCCAGC 2 cut(s) 102, 692
PspGI CCWGG 4 cut(s) 201, 207, 213, 1004
PspN4I GGNNCC 2 cut(s) 171, 886
PspPI GGNCC 3 cut(s) 48, 205, 211
PsuI RGATCY 1 cut(s) 59
PvuII CAGCTG 2 cut(s) 102, 974
RsaI GTAC 1 cut(s) 886
RsaNI GTAC 1 cut(s) 885
RseI CAYNNNNRTG 1 cut(s) 441
Rsr2I CGGWCCG 1 cut(s) 48
RsrII CGGWCCG 1 cut(s) 48
SaqAI TTAA 2 cut(s) 591, 1016
SatI GCNGC 8 cut(s) 73, 130, 158, 303, 759, 801, 972, 975
Sau3AI GATC 8 cut(s) 59, 274, 331, 388, 415, 511, 792, 868
Sau96I GGNCC 3 cut(s) 48, 205, 211
SchI GAGTC 2 cut(s) 465, 926
ScrFI CCNGG 4 cut(s) 203, 209, 215, 1006
SduI GDGCHC 2 cut(s) 109, 174
SfaNI GCATC 2 cut(s) 840, 1049
SfuI TTCGAA 1 cut(s) 938
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 1015
SmoI CTYRAG 1 cut(s) 1015
SpeI ACTAGT 1 cut(s) 142
Sse9I AATT 9 cut(s) 236, 254, 372, 401, 816, 821, 878, 900, 1033
SseBI AGGCCT 2 cut(s) 201, 261
SsiI CCGC 3 cut(s) 72, 88, 129
SspMI CTAG 4 cut(s) 143, 353, 912, 1084
StuI AGGCCT 2 cut(s) 201, 261
StyD4I CCNGG 4 cut(s) 201, 207, 213, 1004
StyI CCWWGG 2 cut(s) 327, 462
TaaI ACNGT 4 cut(s) 48, 111, 309, 491
TaqI TCGA 7 cut(s) 78, 363, 716, 806, 871, 938, 991
TasI AATT 9 cut(s) 236, 254, 372, 401, 816, 821, 878, 900, 1033
TauI GCSGC 2 cut(s) 75, 132
TfiI GAWTC 4 cut(s) 182, 286, 566, 713
Tru1I TTAA 2 cut(s) 591, 1016
Tru9I TTAA 2 cut(s) 591, 1016
TscAI CASTG 2 cut(s) 312, 913
TseFI GTSAC 2 cut(s) 491, 985
TseI GCWGC 6 cut(s) 157, 302, 758, 800, 971, 974
Tsp45I GTSAC 2 cut(s) 491, 985
TspDTI ATGAA 1 cut(s) 462
TspRI CASTG 2 cut(s) 312, 913
Vha464I CTTAAG 1 cut(s) 1015
VpaK11BI GGWCC 1 cut(s) 48
XapI RAATTY 3 cut(s) 236, 401, 1033
XceI RCATGY 2 cut(s) 136, 776
XspI CTAG 4 cut(s) 143, 353, 912, 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.