Rh6CG050000

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000538
Physical Location & Seq
Reverse (-)
4938821 .. 4967242
28422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG050000.1

Sequence Viewer

Length: 879 bp
ATGAGTCGACATCCTAGTGTGAAGTGGGCTCAGCAGCCTGATACGCTTTACATCACTATTGAGTTGCCTGATGCCCAGGATGTAAAGCTTAAACTGGAGCCTGAAGGAAAGTTTCTATTCTCTGCTACCACTGGAGCAGAAAAGACACCCTACGTAGTTGATCTTGATCTCTATGACAAGATTGATGTAAATGAGAGGCATGAAATGAGGAATTGTAGACAATTGAAGTCCAAAGAGGTAAGGGCCAAGCAGACGAAGTTTCACCAAGAATATAGAGTCCAAAATAAGTTGCATGTTGCCAATGATGGTGCTGCTTCTAACAAGGATCAGAGTCATCAGACTATCAATGATGTTGTAAGAGAGGGTGTGAACAGGGTGGAAGAGCCACCCATTGTGAGCAGGGTGGAAAAGTCACCCGTTTTGAACAGGGTGGAAGAGTCACCCATTGTGGAGCAAATAGTGACCAGAGAAGCTATTAACCTGGACAAACAGGTTGTTCAGATTGATCAAAATGAAGCTACTAATATTGCCTCCTCAAGTAGGCATAATGAGAGTCCTGGTATAAACAAAGAAATTGGAAATAAAGAAGCTGCAGTGCTAGAAATAGTTGGTCACTTAGTGACAGACGCTAATGACGACTCGAAAGATGAGGGTCATGACTCCTCTGATAGTGGTTCTCATGTAACTAGAAGTGTTGATACTGAGGGTGGCAAGCCAAGTCCACAGGAACAAAAGACAGTTGATGCAATTTTTGAAGCAAGCAAGCTCCCTCTATCAATTATATTTGTTGGTGTTGGAGATGGGCCCTGGGACATGATGAAAGAGTTTGATGACAACATTCGTACTCGGGCATTGATAATTTCCATGTTAAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

292

Amino Acids

32.64

Weight (kDa)

5.15

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 5 - 65 1.5e-07 CS domain
Copine PF07002 240 - 279 2.1e-13 Copine
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 7, 217
AclWI GGATC 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 619
AfaI GTAC 1 cut(s) 844
AfiI CCNNNNNNNGG 1 cut(s) 540
AgsI TTSAA 3 cut(s) 226, 424, 755
AjnI CCWGG 4 cut(s) 75, 480, 556, 806
AluBI AGCT 5 cut(s) 88, 473, 518, 590, 766
AluI AGCT 5 cut(s) 88, 473, 518, 590, 766
AlwI GGATC 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 846
AoxI GGCC 2 cut(s) 243, 803
ApaI GGGCCC 1 cut(s) 807
ApeKI GCWGC 3 cut(s) 34, 311, 590
AspS9I GGNCC 3 cut(s) 243, 803, 804
AsuHPI GGTGA 3 cut(s) 254, 405, 432
AvaI CYCGRG 1 cut(s) 846
BaeGI GKGCMC 1 cut(s) 807
BanII GRGCYC 2 cut(s) 31, 807
BarI GAAGNNNNNNTAC 2 cut(s) 682, 714
BbvI GCAGC 3 cut(s) 46, 298, 577
BccI CCATC 2 cut(s) 299, 794
BciT130I CCWGG 4 cut(s) 77, 482, 558, 808
BclI TGATCA 1 cut(s) 505
BfaI CTAG 3 cut(s) 15, 599, 687
BfmI CTRYAG 1 cut(s) 591
BisI GCNGC 3 cut(s) 35, 312, 591
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 3 cut(s) 36, 313, 592
Bme1390I CCNGG 4 cut(s) 77, 482, 558, 808
BmeT110I CYCGRG 1 cut(s) 846
BmgT120I GGNCC 3 cut(s) 243, 803, 804
BmiI GGNNCC 2 cut(s) 99, 805
BmrFI CCNGG 4 cut(s) 77, 482, 558, 808
BmsI GCATC 2 cut(s) 61, 733
BpmI CTGGAG 2 cut(s) 116, 153
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 520
BsaAI YACGTR 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 75, 806, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 540
Bse1I ACTGG 2 cut(s) 99, 136
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 4 cut(s) 77, 482, 558, 808
BseDI CCNNGG 3 cut(s) 75, 806, 807
BseGI GGATG 2 cut(s) 10, 85
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 540
BseMII CTCAG 2 cut(s) 44, 693
BseNI ACTGG 2 cut(s) 99, 136
BseRI GAGGAG 2 cut(s) 523, 652
BseSI GKGCMC 1 cut(s) 807
BseXI GCAGC 3 cut(s) 46, 298, 577
BshFI GGCC 2 cut(s) 245, 805
BsiHKCI CYCGRG 1 cut(s) 846
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 824
BsnI GGCC 2 cut(s) 245, 805
BsoBI CYCGRG 1 cut(s) 846
Bsp120I GGGCCC 1 cut(s) 803
Bsp1286I GDGCHC 2 cut(s) 31, 807
Bsp143I GATC 4 cut(s) 160, 166, 325, 505
Bsp1720I GCTNAGC 1 cut(s) 30
BspANI GGCC 2 cut(s) 245, 805
BspCNI CTCAG 2 cut(s) 43, 694
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 2 cut(s) 99, 805
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 1 cut(s) 333
BspQI GCTCTTC 1 cut(s) 375
BsrI ACTGG 2 cut(s) 99, 136
BssECI CCNNGG 3 cut(s) 75, 806, 807
BssMI GATC 4 cut(s) 160, 166, 325, 505
Bst2UI CCWGG 4 cut(s) 77, 482, 558, 808
Bst4CI ACNGT 1 cut(s) 739
Bst6I CTCTTC 2 cut(s) 375, 429
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 3 cut(s) 713, 760, 764
BstDEI CTNAG 3 cut(s) 30, 616, 702
BstENI CCTNNNNNAGG 1 cut(s) 538
BstF5I GGATG 2 cut(s) 10, 85
BstKTI GATC 4 cut(s) 163, 169, 328, 508
BstMBI GATC 4 cut(s) 160, 166, 325, 505
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 4 cut(s) 77, 482, 558, 808
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 4 cut(s) 75, 480, 556, 806
BstSFI CTRYAG 1 cut(s) 591
BstSLI GKGCMC 1 cut(s) 807
BstSNI TACGTA 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 46, 298, 577
BsuRI GGCC 2 cut(s) 245, 805
BtsCI GGATG 2 cut(s) 10, 85
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 129, 600
Cac8I GCNNGC 3 cut(s) 713, 760, 764
CciI TCATGA 1 cut(s) 655
Cfr13I GGNCC 3 cut(s) 243, 803, 804
CseI GACGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 843
CviAII CATG 6 cut(s) 200, 293, 656, 680, 814, 865
CviQI GTAC 1 cut(s) 843
DdeI CTNAG 3 cut(s) 30, 616, 702
DpnI GATC 4 cut(s) 162, 168, 327, 507
DpnII GATC 4 cut(s) 160, 166, 325, 505
DraIII CACNNNGTG 1 cut(s) 619
Eam1104I CTCTTC 2 cut(s) 375, 429
EarI CTCTTC 2 cut(s) 375, 429
Eco105I TACGTA 1 cut(s) 154
Eco24I GRGCYC 2 cut(s) 31, 807
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 846
EcoNI CCTNNNNNAGG 1 cut(s) 538
EcoO109I RGGNCCY 1 cut(s) 804
EcoRII CCWGG 4 cut(s) 75, 480, 556, 806
EcoT38I GRGCYC 2 cut(s) 31, 807
FaeI CATG 6 cut(s) 203, 296, 659, 683, 817, 868
FaqI GGGAC 1 cut(s) 824
FatI CATG 6 cut(s) 199, 292, 655, 679, 813, 864
FbaI TGATCA 1 cut(s) 505
FblI GTMKAC 2 cut(s) 7, 217
Fnu4HI GCNGC 3 cut(s) 35, 312, 591
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 2 cut(s) 31, 807
Fsp4HI GCNGC 3 cut(s) 35, 312, 591
FspBI CTAG 3 cut(s) 15, 599, 687
GluI GCNGC 3 cut(s) 35, 312, 591
GsuI CTGGAG 2 cut(s) 116, 153
HaeIII GGCC 2 cut(s) 245, 805
HgaI GACGC 1 cut(s) 635
Hin1II CATG 6 cut(s) 203, 296, 659, 683, 817, 868
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 7 cut(s) 4, 276, 331, 437, 553, 638, 659
HphI GGTGA 3 cut(s) 254, 405, 432
Hpy166II GTNNAC 4 cut(s) 8, 218, 370, 722
Hpy188I TCNGA 4 cut(s) 330, 339, 501, 667
Hpy188III TCNNGA 2 cut(s) 164, 656
Hpy8I GTNNAC 4 cut(s) 8, 218, 370, 722
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 739
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 292, 593, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 3 cut(s) 30, 616, 702
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 6 cut(s) 203, 296, 659, 683, 817, 868
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 4 cut(s) 160, 166, 325, 505
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 4 cut(s) 97, 134, 451, 771
Lsp1109I GCAGC 3 cut(s) 46, 298, 577
LweI GCATC 2 cut(s) 61, 733
MaeI CTAG 3 cut(s) 15, 599, 687
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 6 cut(s) 411, 438, 460, 611, 619, 682
MalI GATC 4 cut(s) 162, 168, 327, 507
MboI GATC 4 cut(s) 160, 166, 325, 505
MboII GAAGA 2 cut(s) 392, 446
MfeI CAATTG 1 cut(s) 221
MhlI GDGCHC 2 cut(s) 31, 807
MluCI AATT 6 cut(s) 211, 221, 573, 747, 777, 858
MlyI GAGTC 7 cut(s) 13, 285, 340, 446, 562, 632, 653
MmeI TCCRAC 1 cut(s) 775
MseI TTAA 3 cut(s) 90, 477, 869
MslI CAYNNNNRTG 1 cut(s) 15
MspR9I CCNGG 4 cut(s) 77, 482, 558, 808
MunI CAATTG 1 cut(s) 221
MvaI CCWGG 4 cut(s) 77, 482, 558, 808
MwoI GCNNNNNNNGC 1 cut(s) 43
NdeII GATC 4 cut(s) 160, 166, 325, 505
NlaIII CATG 6 cut(s) 203, 296, 659, 683, 817, 868
NlaIV GGNNCC 2 cut(s) 99, 805
NmuCI GTSAC 5 cut(s) 411, 438, 460, 611, 619
NspI RCATGY 1 cut(s) 296
PagI TCATGA 1 cut(s) 655
PasI CCCWGGG 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 633
PkrI GCNGC 3 cut(s) 36, 313, 592
PleI GAGTC 7 cut(s) 12, 284, 339, 445, 561, 632, 653
PpsI GAGTC 7 cut(s) 12, 284, 339, 445, 561, 632, 653
Ppu21I YACGTR 1 cut(s) 154
Psp6I CCWGG 4 cut(s) 75, 480, 556, 806
PspGI CCWGG 4 cut(s) 75, 480, 556, 806
PspN4I GGNNCC 2 cut(s) 99, 805
PspOMI GGGCCC 1 cut(s) 803
PspPI GGNCC 3 cut(s) 243, 803, 804
PstI CTGCAG 1 cut(s) 595
RsaI GTAC 1 cut(s) 844
RsaNI GTAC 1 cut(s) 843
RseI CAYNNNNRTG 1 cut(s) 15
SalI GTCGAC 1 cut(s) 6
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 3 cut(s) 90, 477, 869
SatI GCNGC 3 cut(s) 35, 312, 591
Sau3AI GATC 4 cut(s) 160, 166, 325, 505
Sau96I GGNCC 3 cut(s) 243, 803, 804
SchI GAGTC 7 cut(s) 13, 285, 340, 446, 562, 632, 653
ScrFI CCNGG 4 cut(s) 77, 482, 558, 808
SduI GDGCHC 2 cut(s) 31, 807
SetI ASST 9 cut(s) 90, 156, 240, 475, 483, 495, 520, 592, 768
SfaNI GCATC 2 cut(s) 61, 733
SfcI CTRYAG 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
SnaBI TACGTA 1 cut(s) 154
Sse9I AATT 6 cut(s) 211, 221, 573, 747, 777, 858
SspI AATATT 1 cut(s) 526
SspMI CTAG 3 cut(s) 15, 599, 687
StyD4I CCNGG 4 cut(s) 75, 480, 556, 806
TaaI ACNGT 1 cut(s) 739
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 7, 641
TasI AATT 6 cut(s) 211, 221, 573, 747, 777, 858
Tru1I TTAA 3 cut(s) 90, 477, 869
Tru9I TTAA 3 cut(s) 90, 477, 869
TscAI CASTG 2 cut(s) 136, 600
TseFI GTSAC 5 cut(s) 411, 438, 460, 611, 619
TseI GCWGC 3 cut(s) 34, 311, 590
Tsp45I GTSAC 5 cut(s) 411, 438, 460, 611, 619
TspDTI ATGAA 3 cut(s) 216, 528, 833
TspRI CASTG 2 cut(s) 136, 600
XagI CCTNNNNNAGG 1 cut(s) 538
XceI RCATGY 1 cut(s) 296
XmiI GTMKAC 2 cut(s) 7, 217
XspI CTAG 3 cut(s) 15, 599, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.