RchiOBHm_Chr6g0253271

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000538
Physical Location & Seq
Reverse (-)
8406968 .. 8407579
612 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22710

Sequence Viewer

Length: 612 bp
ATGATTAAAGAGTTGGAGGCACAAATCAAAGGGTTGGAAGCTTGTTTAGCCACAGAAGTAAGCAACAGGAAAAAGATTGATGAGCTTATCGATTCGATCGAGACACAAGTCACCACTGCGAGAGATGGACTGGTCTCTGACTTGGCACAAGTGTCTTCCATGGAGGGAACGACCCAAGCAGCTCACCAGTTAGTAACTCGAAAACAGTCTCACTGGGATAACCTAAAGACTATGTTTACTAGGTTTGCAATTGCATACGCCACCATGAGTCGACATCCTAGTGTGAAGTGGGCACAGCAGCCTGATATGCTTTACATCACTATTGAGTTGCCTGATGCCGAGGATGTAAAGCTTAAACTGGAGCCTGAAGGAAAGTTTCTATTCTCTGCCACCACTGGAGCAGAAAAGACACCCTATGTAGTTGATCTTGATCTCTATGACAAGATTGATGTAAATGAGAGTAGGTATAGTGTTGGCTCGAGAAATATCTTTTACCTAGTGAAAAAAGCTGAAAATAAATGGTGGAGCAGATTGATAAAACAAGAAGGAAAGGCTCCTGGGTTCTTGATAGTTGATTGGGATAATTGCGGAGATGAGCAGGCGGGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

203

Amino Acids

22.98

Weight (kDa)

5.2

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 93 - 169 6.7e-12 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 271
AciI CCGC 2 cut(s) 588, 602
AcuI CTGAAG 1 cut(s) 387
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 5 cut(s) 41, 85, 182, 352, 509
AluI AGCT 5 cut(s) 41, 85, 182, 352, 509
Alw26I GTCTC 3 cut(s) 95, 139, 213
Ama87I CYCGRG 1 cut(s) 478
ApeKI GCWGC 2 cut(s) 179, 298
AsuHPI GGTGA 2 cut(s) 103, 176
AvaI CYCGRG 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 191, 310
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 558
BcoDI GTCTC 3 cut(s) 95, 139, 213
BfaI CTAG 4 cut(s) 240, 279, 497, 610
BisI GCNGC 2 cut(s) 180, 299
BlsI GCNGC 2 cut(s) 181, 300
Bme1390I CCNGG 1 cut(s) 558
BmeT110I CYCGRG 1 cut(s) 478
BmiI GGNNCC 2 cut(s) 363, 555
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 380, 417
Bsa29I ATCGAT 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 3 cut(s) 159, 339, 557
Bse1I ACTGG 5 cut(s) 135, 187, 218, 363, 400
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 558
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 159, 339, 557
BseGI GGATG 2 cut(s) 274, 349
BseJI GATNNNNATC 1 cut(s) 429
BseNI ACTGG 5 cut(s) 135, 187, 218, 363, 400
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 2 cut(s) 191, 310
Bsh1285I CGRYCG 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 478
BsmAI GTCTC 3 cut(s) 95, 139, 213
Bso31I GGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 4 cut(s) 96, 424, 430, 606
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 2 cut(s) 588, 602
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 363, 555
BspTNI GGTCTC 1 cut(s) 139
BsrI ACTGG 5 cut(s) 135, 187, 218, 363, 400
BssECI CCNNGG 3 cut(s) 159, 339, 557
BssMI GATC 4 cut(s) 96, 424, 430, 606
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 600
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 274, 349
BstKTI GATC 4 cut(s) 99, 427, 433, 609
BstMAI GTCTC 3 cut(s) 95, 139, 213
BstMBI GATC 4 cut(s) 96, 424, 430, 606
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 47, 307
BstNI CCWGG 1 cut(s) 558
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 556
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 191, 310
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 606
BstYI RGATCY 1 cut(s) 606
Bsu15I ATCGAT 1 cut(s) 90
BsuTUI ATCGAT 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 274, 349
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 3 cut(s) 114, 211, 393
Cac8I GCNNGC 1 cut(s) 600
ClaI ATCGAT 1 cut(s) 90
CviAII CATG 2 cut(s) 160, 265
DpnI GATC 4 cut(s) 98, 426, 432, 608
DpnII GATC 4 cut(s) 96, 424, 430, 606
Eco130I CCWWGG 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 2 cut(s) 163, 268
FaiI YATR 8 cut(s) 161, 233, 256, 266, 308, 417, 438, 468
FatI CATG 2 cut(s) 159, 264
FauI CCCGC 1 cut(s) 595
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 180, 299
FokI GGATG 2 cut(s) 261, 356
Fsp4HI GCNGC 2 cut(s) 180, 299
FspBI CTAG 4 cut(s) 240, 279, 497, 610
GluI GCNGC 2 cut(s) 180, 299
GsuI CTGGAG 2 cut(s) 380, 417
Hin1II CATG 2 cut(s) 163, 268
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 2 cut(s) 39, 350
HinfI GANTC 2 cut(s) 92, 268
HphI GGTGA 2 cut(s) 103, 176
Hpy166II GTNNAC 2 cut(s) 237, 272
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 4 cut(s) 100, 428, 480, 565
Hpy8I GTNNAC 2 cut(s) 237, 272
HpyAV CCTTC 2 cut(s) 362, 539
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 248, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 307
Hsp92II CATG 2 cut(s) 163, 268
Kzo9I GATC 4 cut(s) 96, 424, 430, 606
LmnI GCTCC 4 cut(s) 361, 398, 525, 559
Lsp1109I GCAGC 2 cut(s) 191, 310
LweI GCATC 1 cut(s) 325
MaeI CTAG 4 cut(s) 240, 279, 497, 610
MaeIII GTNAC 2 cut(s) 109, 193
MalI GATC 4 cut(s) 98, 426, 432, 608
MboI GATC 4 cut(s) 96, 424, 430, 606
MboII GAAGA 1 cut(s) 147
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 2 cut(s) 249, 583
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 3 cut(s) 10, 157, 334
MseI TTAA 2 cut(s) 6, 354
MslI CAYNNNNRTG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 558
MunI CAATTG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 558
MwoI GCNNNNNNNGC 2 cut(s) 47, 307
NcoI CCATGG 1 cut(s) 159
NdeII GATC 4 cut(s) 96, 424, 430, 606
NlaIII CATG 2 cut(s) 163, 268
NlaIV GGNNCC 2 cut(s) 363, 555
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 109
PaeR7I CTCGAG 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 181, 300
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PshAI GACNNNNGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 2 cut(s) 363, 555
PsuI RGATCY 1 cut(s) 606
PvuI CGATCG 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 279
SalI GTCGAC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 6, 354
SatI GCNGC 2 cut(s) 180, 299
Sau3AI GATC 4 cut(s) 96, 424, 430, 606
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 295
SetI ASST 9 cut(s) 43, 87, 184, 225, 245, 354, 467, 498, 511
SfaNI GCATC 1 cut(s) 325
Sfr274I CTCGAG 1 cut(s) 478
SlaI CTCGAG 1 cut(s) 478
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
Sse9I AATT 2 cut(s) 249, 583
SsiI CCGC 2 cut(s) 588, 602
SspMI CTAG 4 cut(s) 240, 279, 497, 610
StyD4I CCNGG 1 cut(s) 556
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 207
TaqI TCGA 6 cut(s) 90, 95, 99, 199, 271, 479
TasI AATT 2 cut(s) 249, 583
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 6, 354
Tru9I TTAA 2 cut(s) 6, 354
TscAI CASTG 3 cut(s) 121, 218, 400
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 2 cut(s) 179, 298
Tsp45I GTSAC 1 cut(s) 109
TspRI CASTG 3 cut(s) 121, 218, 400
XhoI CTCGAG 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 271
XspI CTAG 4 cut(s) 240, 279, 497, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.