histone deacetylase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rft-1 | PF04506 | 25 - 524 | 1.8e-131 | Rft protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 828 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 332 |
| AccI | GTMKAC | 1 cut(s) | 648 |
| AciI | CCGC | 5 cut(s) | 191, 429, 522, 1266, 1612 |
| AclWI | GGATC | 5 cut(s) | 130, 392, 422, 772, 1545 |
| AcsI | RAATTY | 6 cut(s) | 111, 145, 308, 796, 1294, 1465 |
| AcuI | CTGAAG | 4 cut(s) | 679, 767, 1176, 1413 |
| AcyI | GRCGYC | 1 cut(s) | 45 |
| AdeI | CACNNNGTG | 1 cut(s) | 332 |
| AfaI | GTAC | 6 cut(s) | 80, 183, 274, 907, 1167, 1242 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 332, 952, 982, 994, 1581 |
| AflII | CTTAAG | 1 cut(s) | 989 |
| AgsI | TTSAA | 6 cut(s) | 76, 105, 161, 279, 515, 899 |
| AjnI | CCWGG | 3 cut(s) | 867, 1104, 1353 |
| AluBI | AGCT | 7 cut(s) | 51, 390, 572, 730, 836, 994, 1192 |
| AluI | AGCT | 7 cut(s) | 51, 390, 572, 730, 836, 994, 1192 |
| AlwI | GGATC | 5 cut(s) | 130, 392, 422, 772, 1545 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 359, 1195 |
| Ama87I | CYCGRG | 1 cut(s) | 1033 |
| AoxI | GGCC | 2 cut(s) | 984, 1030 |
| ApeKI | GCWGC | 4 cut(s) | 353, 487, 490, 537 |
| ApoI | RAATTY | 6 cut(s) | 111, 145, 308, 796, 1294, 1465 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1466 |
| AspLEI | GCGC | 2 cut(s) | 172, 1274 |
| AspS9I | GGNCC | 2 cut(s) | 985, 1031 |
| AsuC2I | CCSGG | 1 cut(s) | 224 |
| AsuHPI | GGTGA | 1 cut(s) | 886 |
| AvaI | CYCGRG | 1 cut(s) | 1033 |
| BanII | GRGCYC | 1 cut(s) | 462 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 961, 993, 1149, 1181 |
| BbsI | GAAGAC | 1 cut(s) | 168 |
| BbvI | GCAGC | 4 cut(s) | 365, 474, 477, 524 |
| BccI | CCATC | 6 cut(s) | 716, 874, 1079, 1219, 1392, 1583 |
| BceAI | ACGGC | 1 cut(s) | 536 |
| BciT130I | CCWGG | 3 cut(s) | 869, 1106, 1355 |
| BclI | TGATCA | 1 cut(s) | 1621 |
| BcnI | CCSGG | 1 cut(s) | 224 |
| BfaI | CTAG | 1 cut(s) | 1454 |
| BfmI | CTRYAG | 1 cut(s) | 351 |
| BfrI | CTTAAG | 1 cut(s) | 989 |
| BisI | GCNGC | 5 cut(s) | 354, 488, 491, 522, 538 |
| BlsI | GCNGC | 5 cut(s) | 355, 489, 492, 523, 539 |
| BmcAI | AGTACT | 1 cut(s) | 1242 |
| Bme1390I | CCNGG | 4 cut(s) | 224, 869, 1106, 1355 |
| BmeT110I | CYCGRG | 1 cut(s) | 1033 |
| BmgT120I | GGNCC | 2 cut(s) | 985, 1031 |
| BmiI | GGNNCC | 2 cut(s) | 324, 866 |
| BmrFI | CCNGG | 4 cut(s) | 224, 869, 1106, 1355 |
| BmrI | ACTGGG | 1 cut(s) | 88 |
| BmsI | GCATC | 3 cut(s) | 941, 1103, 1605 |
| BmuI | ACTGGG | 1 cut(s) | 88 |
| BpiI | GAAGAC | 1 cut(s) | 168 |
| BpuEI | CTTGAG | 1 cut(s) | 406 |
| BpuMI | CCSGG | 1 cut(s) | 224 |
| BsaHI | GRCGYC | 1 cut(s) | 45 |
| BsaJI | CCNNGG | 2 cut(s) | 1104, 1105 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 332, 952, 982, 994, 1581 |
| Bse1I | ACTGG | 2 cut(s) | 94, 430 |
| Bse3DI | GCAATG | 1 cut(s) | 274 |
| BseBI | CCWGG | 3 cut(s) | 869, 1106, 1355 |
| BseDI | CCNNGG | 2 cut(s) | 1104, 1105 |
| BseGI | GGATG | 2 cut(s) | 885, 1403 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 332, 952, 982, 994, 1581 |
| BseMI | GCAATG | 1 cut(s) | 274 |
| BseMII | CTCAG | 4 cut(s) | 154, 232, 648, 1431 |
| BseNI | ACTGG | 2 cut(s) | 94, 430 |
| BseXI | GCAGC | 4 cut(s) | 365, 474, 477, 524 |
| BsgI | GTGCAG | 1 cut(s) | 1501 |
| BshFI | GGCC | 2 cut(s) | 986, 1032 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1033 |
| BsiSI | CCGG | 1 cut(s) | 223 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 332, 952, 982, 994, 1581 |
| BsmI | GAATGC | 1 cut(s) | 1334 |
| BsnI | GGCC | 2 cut(s) | 986, 1032 |
| BsoBI | CYCGRG | 1 cut(s) | 1033 |
| Bsp1286I | GDGCHC | 1 cut(s) | 462 |
| Bsp1407I | TGTACA | 1 cut(s) | 1165 |
| Bsp143I | GATC | 7 cut(s) | 135, 300, 397, 414, 777, 1550, 1621 |
| BspACI | CCGC | 5 cut(s) | 191, 429, 522, 1266, 1612 |
| BspANI | GGCC | 2 cut(s) | 986, 1032 |
| BspCNI | CTCAG | 4 cut(s) | 153, 231, 647, 1432 |
| BspHI | TCATGA | 2 cut(s) | 303, 1543 |
| BspLI | GGNNCC | 2 cut(s) | 324, 866 |
| BspMAI | CTGCAG | 1 cut(s) | 355 |
| BspPI | GGATC | 5 cut(s) | 130, 392, 422, 772, 1545 |
| BspTI | CTTAAG | 1 cut(s) | 989 |
| BsrDI | GCAATG | 1 cut(s) | 274 |
| BsrGI | TGTACA | 1 cut(s) | 1165 |
| BsrI | ACTGG | 2 cut(s) | 94, 430 |
| BssECI | CCNNGG | 2 cut(s) | 1104, 1105 |
| BssMI | GATC | 7 cut(s) | 135, 300, 397, 414, 777, 1550, 1621 |
| BssNI | GRCGYC | 1 cut(s) | 45 |
| Bst2UI | CCWGG | 3 cut(s) | 869, 1106, 1355 |
| Bst4CI | ACNGT | 4 cut(s) | 186, 330, 624, 813 |
| BstACI | GRCGYC | 1 cut(s) | 45 |
| BstAFI | CTTAAG | 1 cut(s) | 989 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 929 |
| BstAUI | TGTACA | 1 cut(s) | 1165 |
| BstC8I | GCNNGC | 7 cut(s) | 49, 240, 507, 566, 570, 1270, 1510 |
| BstDEI | CTNAG | 5 cut(s) | 140, 218, 634, 1440, 1627 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 980 |
| BstF5I | GGATG | 2 cut(s) | 885, 1403 |
| BstHHI | GCGC | 2 cut(s) | 172, 1274 |
| BstKTI | GATC | 7 cut(s) | 138, 303, 400, 417, 780, 1553, 1624 |
| BstMBI | GATC | 7 cut(s) | 135, 300, 397, 414, 777, 1550, 1621 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 920, 929, 1100, 1278 |
| BstNI | CCWGG | 3 cut(s) | 869, 1106, 1355 |
| BstNSI | RCATGY | 4 cut(s) | 246, 438, 568, 1172 |
| BstSCI | CCNGG | 4 cut(s) | 222, 867, 1104, 1353 |
| BstSFI | CTRYAG | 1 cut(s) | 351 |
| BstV1I | GCAGC | 4 cut(s) | 365, 474, 477, 524 |
| BstV2I | GAAGAC | 1 cut(s) | 168 |
| BstX2I | RGATCY | 2 cut(s) | 414, 1550 |
| BstYI | RGATCY | 2 cut(s) | 414, 1550 |
| BsuRI | GGCC | 2 cut(s) | 986, 1032 |
| BtsCI | GGATG | 2 cut(s) | 885, 1403 |
| BtsIMutI | CAGTG | 1 cut(s) | 818 |
| Cac8I | GCNNGC | 7 cut(s) | 49, 240, 507, 566, 570, 1270, 1510 |
| CaiI | CAGNNNCTG | 2 cut(s) | 359, 1195 |
| CciI | TCATGA | 2 cut(s) | 303, 1543 |
| CfoI | GCGC | 2 cut(s) | 172, 1274 |
| Cfr13I | GGNCC | 2 cut(s) | 985, 1031 |
| CseI | GACGC | 2 cut(s) | 53, 345 |
| Csp6I | GTAC | 6 cut(s) | 79, 182, 273, 906, 1166, 1241 |
| CviAII | CATG | 8 cut(s) | 243, 259, 304, 435, 565, 577, 1169, 1544 |
| CviQI | GTAC | 6 cut(s) | 79, 182, 273, 906, 1166, 1241 |
| DdeI | CTNAG | 5 cut(s) | 140, 218, 634, 1440, 1627 |
| DpnI | GATC | 7 cut(s) | 137, 302, 399, 416, 779, 1552, 1623 |
| DpnII | GATC | 7 cut(s) | 135, 300, 397, 414, 777, 1550, 1621 |
| DraIII | CACNNNGTG | 1 cut(s) | 332 |
| Eco24I | GRGCYC | 1 cut(s) | 462 |
| Eco57I | CTGAAG | 4 cut(s) | 679, 767, 1176, 1413 |
| Eco88I | CYCGRG | 1 cut(s) | 1033 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 980 |
| EcoO109I | RGGNCCY | 1 cut(s) | 985 |
| EcoRI | GAATTC | 1 cut(s) | 111 |
| EcoRII | CCWGG | 3 cut(s) | 867, 1104, 1353 |
| EcoT38I | GRGCYC | 1 cut(s) | 462 |
| FaeI | CATG | 8 cut(s) | 246, 262, 307, 438, 568, 580, 1172, 1547 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1334, 1366 |
| FatI | CATG | 8 cut(s) | 242, 258, 303, 434, 564, 576, 1168, 1543 |
| FauNDI | CATATG | 1 cut(s) | 403 |
| FbaI | TGATCA | 1 cut(s) | 1621 |
| FblI | GTMKAC | 1 cut(s) | 648 |
| Fnu4HI | GCNGC | 5 cut(s) | 354, 488, 491, 522, 538 |
| FokI | GGATG | 2 cut(s) | 892, 1410 |
| FriOI | GRGCYC | 1 cut(s) | 462 |
| Fsp4HI | GCNGC | 5 cut(s) | 354, 488, 491, 522, 538 |
| FspBI | CTAG | 1 cut(s) | 1454 |
| GlaI | GCGC | 2 cut(s) | 171, 1273 |
| GluI | GCNGC | 5 cut(s) | 354, 488, 491, 522, 538 |
| HaeIII | GGCC | 2 cut(s) | 986, 1032 |
| HapII | CCGG | 1 cut(s) | 223 |
| HgaI | GACGC | 2 cut(s) | 53, 345 |
| HhaI | GCGC | 2 cut(s) | 172, 1274 |
| Hin1I | GRCGYC | 1 cut(s) | 45 |
| Hin1II | CATG | 8 cut(s) | 246, 262, 307, 438, 568, 580, 1172, 1547 |
| Hin6I | GCGC | 2 cut(s) | 170, 1272 |
| HinP1I | GCGC | 2 cut(s) | 170, 1272 |
| HinfI | GANTC | 2 cut(s) | 26, 1358 |
| HpaII | CCGG | 1 cut(s) | 223 |
| HphI | GGTGA | 1 cut(s) | 886 |
| Hpy166II | GTNNAC | 3 cut(s) | 649, 853, 1261 |
| Hpy188III | TCNNGA | 8 cut(s) | 105, 304, 418, 785, 936, 1419, 1454, 1544 |
| Hpy8I | GTNNAC | 3 cut(s) | 649, 853, 1261 |
| Hpy99I | CGWCG | 3 cut(s) | 19, 22, 58 |
| HpyAV | CCTTC | 5 cut(s) | 703, 782, 791, 1388, 1396 |
| HpyCH4III | ACNGT | 4 cut(s) | 186, 330, 624, 813 |
| HpyCH4V | TGCA | 9 cut(s) | 353, 434, 540, 599, 760, 923, 932, 1172, 1518 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 920, 929, 1100, 1278 |
| HpyF3I | CTNAG | 5 cut(s) | 140, 218, 634, 1440, 1627 |
| Hsp92I | GRCGYC | 1 cut(s) | 45 |
| Hsp92II | CATG | 8 cut(s) | 246, 262, 307, 438, 568, 580, 1172, 1547 |
| HspAI | GCGC | 2 cut(s) | 170, 1272 |
| Ksp22I | TGATCA | 1 cut(s) | 1621 |
| Kzo9I | GATC | 7 cut(s) | 135, 300, 397, 414, 777, 1550, 1621 |
| LmnI | GCTCC | 2 cut(s) | 727, 864 |
| Lsp1109I | GCAGC | 4 cut(s) | 365, 474, 477, 524 |
| LweI | GCATC | 3 cut(s) | 941, 1103, 1605 |
| MaeI | CTAG | 1 cut(s) | 1454 |
| MaeIII | GTNAC | 2 cut(s) | 41, 603 |
| MalI | GATC | 7 cut(s) | 137, 302, 399, 416, 779, 1552, 1623 |
| MboI | GATC | 7 cut(s) | 135, 300, 397, 414, 777, 1550, 1621 |
| MflI | RGATCY | 2 cut(s) | 414, 1550 |
| MhlI | GDGCHC | 1 cut(s) | 462 |
| MmeI | TCCRAC | 1 cut(s) | 36 |
| MnlI | CCTC | 7 cut(s) | 101, 149, 220, 870, 954, 976, 1375 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1466 |
| MseI | TTAA | 8 cut(s) | 153, 495, 500, 734, 990, 1004, 1283, 1301 |
| MspA1I | CMGCKG | 1 cut(s) | 1268 |
| MspCI | CTTAAG | 1 cut(s) | 989 |
| MspI | CCGG | 1 cut(s) | 223 |
| MspR9I | CCNGG | 4 cut(s) | 224, 869, 1106, 1355 |
| Mva1269I | GAATGC | 1 cut(s) | 1334 |
| MvaI | CCWGG | 3 cut(s) | 869, 1106, 1355 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 920, 929, 1100, 1278 |
| NciI | CCSGG | 1 cut(s) | 224 |
| NdeI | CATATG | 1 cut(s) | 403 |
| NdeII | GATC | 7 cut(s) | 135, 300, 397, 414, 777, 1550, 1621 |
| NlaIII | CATG | 8 cut(s) | 246, 262, 307, 438, 568, 580, 1172, 1547 |
| NlaIV | GGNNCC | 2 cut(s) | 324, 866 |
| NmuCI | GTSAC | 2 cut(s) | 41, 603 |
| NspI | RCATGY | 4 cut(s) | 246, 438, 568, 1172 |
| PaeI | GCATGC | 1 cut(s) | 568 |
| PagI | TCATGA | 2 cut(s) | 303, 1543 |
| PasI | CCCWGGG | 1 cut(s) | 1105 |
| PctI | GAATGC | 1 cut(s) | 1334 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1466 |
| PfeI | GAWTC | 2 cut(s) | 26, 1358 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 332 |
| PfoI | TCCNGGA | 1 cut(s) | 1353 |
| PkrI | GCNGC | 5 cut(s) | 355, 489, 492, 523, 539 |
| PsiI | TTATAA | 1 cut(s) | 828 |
| Psp6I | CCWGG | 3 cut(s) | 867, 1104, 1353 |
| PspGI | CCWGG | 3 cut(s) | 867, 1104, 1353 |
| PspN4I | GGNNCC | 2 cut(s) | 324, 866 |
| PspPI | GGNCC | 2 cut(s) | 985, 1031 |
| PstI | CTGCAG | 1 cut(s) | 355 |
| PstNI | CAGNNNCTG | 2 cut(s) | 359, 1195 |
| PsuI | RGATCY | 2 cut(s) | 414, 1550 |
| RsaI | GTAC | 6 cut(s) | 80, 183, 274, 907, 1167, 1242 |
| RsaNI | GTAC | 6 cut(s) | 79, 182, 273, 906, 1166, 1241 |
| SaqAI | TTAA | 8 cut(s) | 153, 495, 500, 734, 990, 1004, 1283, 1301 |
| SatI | GCNGC | 5 cut(s) | 354, 488, 491, 522, 538 |
| Sau3AI | GATC | 7 cut(s) | 135, 300, 397, 414, 777, 1550, 1621 |
| Sau96I | GGNCC | 2 cut(s) | 985, 1031 |
| ScaI | AGTACT | 1 cut(s) | 1242 |
| ScrFI | CCNGG | 4 cut(s) | 224, 869, 1106, 1355 |
| SduI | GDGCHC | 1 cut(s) | 462 |
| SfaNI | GCATC | 3 cut(s) | 941, 1103, 1605 |
| SfcI | CTRYAG | 1 cut(s) | 351 |
| SmlI | CTYRAG | 2 cut(s) | 385, 989 |
| SmoI | CTYRAG | 2 cut(s) | 385, 989 |
| SphI | GCATGC | 1 cut(s) | 568 |
| SsiI | CCGC | 5 cut(s) | 191, 429, 522, 1266, 1612 |
| SspI | AATATT | 2 cut(s) | 1320, 1449 |
| SspMI | CTAG | 1 cut(s) | 1454 |
| StyD4I | CCNGG | 4 cut(s) | 222, 867, 1104, 1353 |
| TaaI | ACNGT | 4 cut(s) | 186, 330, 624, 813 |
| TatI | WGTACW | 3 cut(s) | 181, 1165, 1240 |
| TauI | GCSGC | 1 cut(s) | 524 |
| TfiI | GAWTC | 2 cut(s) | 26, 1358 |
| Tru1I | TTAA | 8 cut(s) | 153, 495, 500, 734, 990, 1004, 1283, 1301 |
| Tru9I | TTAA | 8 cut(s) | 153, 495, 500, 734, 990, 1004, 1283, 1301 |
| TscAI | CASTG | 1 cut(s) | 818 |
| TseFI | GTSAC | 2 cut(s) | 41, 603 |
| TseI | GCWGC | 4 cut(s) | 353, 487, 490, 537 |
| Tsp45I | GTSAC | 2 cut(s) | 41, 603 |
| TspDTI | ATGAA | 7 cut(s) | 109, 275, 320, 1157, 1287, 1327, 1478 |
| TspGWI | ACGGA | 1 cut(s) | 1607 |
| TspRI | CASTG | 1 cut(s) | 818 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 332 |
| Vha464I | CTTAAG | 1 cut(s) | 989 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 980 |
| XapI | RAATTY | 6 cut(s) | 111, 145, 308, 796, 1294, 1465 |
| XbaI | TCTAGA | 1 cut(s) | 1453 |
| XceI | RCATGY | 4 cut(s) | 246, 438, 568, 1172 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 839 |
| XmiI | GTMKAC | 1 cut(s) | 648 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1466 |
| XspI | CTAG | 1 cut(s) | 1454 |
| ZrmI | AGTACT | 1 cut(s) | 1242 |