Rorug05G0543300

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000538
Physical Location & Seq
Forward (+)
73137557 .. 73142748
5192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0543300.1

Sequence Viewer

Length: 993 bp
ATGCAGACGACGGTCTCCAAGGCCTCTTCCGCCATGGTCTCCCTCTCTTGCTCTAGGGGGAGGAGTGGGCTGTGTGTGTGGCCTGGGATGCGGCAGCTTTGCTTTAGGAAAGGCCTCTTGTATGGATTCATGCAACTTTTGTCTGTGCCGTTGAAATCCTTGCGCGGAGCGGCGAGTCGATCGCTTGAAGTTTCTCAGTTCTGCAGTGTTTCCAAAATCTCGGCCTCGTTGCAAATCGAATTGGTACCGTGTCTTAGAGATAACTATGCGTATCTTCTGCACGATGTGGATACTGGCACAGTTGGTGTTGTAGATCCTTCTGAAGCTGTTCCTGTTATAGATGCTTTGAGTAAGAGAAACCGAAATCTGACATATATACTGAATACTCATCATCATCATGATCACACTGGGGGAAATGCAGAGTTAAAAGCAAGGTACGGTGCAAAGGTGATTGGTTCAGGAATAGACCGAGACAGAATTCCTGGCATTGATATCGTTTTAAACGACGGAGACAAATGGATGTTTGCAGGCCATGAGGTCCATGTTATGGGGACGCCTGGTCATACCAAAGGTCACATCAGCTTCTACTTTCCCGGATCAGGGTCAATATTTACAGGAGACACTTTGTTCAGCCTATCATGTGGCAAATTGTTTGAAGGAACACCTGACCAGATGCAGTCTTCCCTTACAAAGATCATGTCTTTGCCAGATGATACAGAAGTATACTTTGGTCATGAATATACATTGAGTAACTCTAAGTTTGCCTTATCTATTGAACCTGAGAACGAGGCACTTCAGTCCTACGCAGCCCGTGTCGCACATCTTCGCAGCAAAGGCGTGCCTACGGTTCCTACTACATTGTTACTGGAGAAGGCTTGCAATCCTTTTCTTCGCACATCCAGTACAGAGATCCGGCAGTTGTTAAATATATCAGCCTCAGCAAGTGAGGCGGAAGCCTTGGGTGTCATACGCCAAGCCAAGGATGCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

330

Amino Acids

35.88

Weight (kDa)

7.67

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 90 - 245 1.7e-20 Metallo-beta-lactamase superfamily
HAGH_C PF16123 246 - 330 3e-25 Hydroxyacylglutathione hydrolase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 547
AccBSI CCGCTC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 723
AccII CGCG 1 cut(s) 165
AciI CCGC 5 cut(s) 30, 91, 165, 170, 950
AclWI GGATC 3 cut(s) 308, 604, 904
AcsI RAATTY 1 cut(s) 477
AcuI CTGAAG 2 cut(s) 342, 779
AcyI GRCGYC 1 cut(s) 554
AdeI CACNNNGTG 1 cut(s) 286
AfaI GTAC 3 cut(s) 246, 437, 904
AfiI CCNNNNNNNGG 4 cut(s) 547, 599, 600, 979
AgsI TTSAA 4 cut(s) 154, 188, 656, 776
AhdI GACNNNNNGTC 1 cut(s) 558
AjnI CCWGG 3 cut(s) 82, 481, 556
AjuI GAANNNNNNNTTGG 2 cut(s) 711, 743
AluBI AGCT 3 cut(s) 97, 326, 582
AluI AGCT 3 cut(s) 97, 326, 582
Alw26I GTCTC 5 cut(s) 19, 43, 465, 504, 612
AlwI GGATC 3 cut(s) 308, 604, 904
AoxI GGCC 5 cut(s) 21, 80, 112, 222, 529
ApeKI GCWGC 3 cut(s) 94, 806, 828
ApoI RAATTY 1 cut(s) 477
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
Asp700I GAANNNNTTC 1 cut(s) 327
Asp718I GGTACC 1 cut(s) 244
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 1 cut(s) 460
AvaII GGWCC 1 cut(s) 538
BaeI ACNNNNGTAYC 2 cut(s) 705, 738
BanI GGYRCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 672
BbvCI CCTCAGC 1 cut(s) 937
BbvI GCAGC 3 cut(s) 106, 818, 840
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BciT130I CCWGG 3 cut(s) 84, 483, 558
BciVI GTATCC 1 cut(s) 283
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 5 cut(s) 19, 43, 465, 504, 612
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 202
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 5 cut(s) 92, 95, 171, 807, 829
BlsI GCNGC 5 cut(s) 93, 96, 172, 808, 830
Bme1390I CCNGG 4 cut(s) 84, 483, 558, 594
Bme18I GGWCC 1 cut(s) 538
BmeRI GACNNNNNGTC 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 2 cut(s) 246, 849
BmrFI CCNGG 4 cut(s) 84, 483, 558, 594
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 4 cut(s) 78, 331, 663, 973
BmuI ACTGGG 1 cut(s) 417
BoxI GACNNNNGTC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 672
BpmI CTGGAG 1 cut(s) 887
Bpu10I CCTNAGC 1 cut(s) 937
BpuMI CCSGG 1 cut(s) 594
BsaHI GRCGYC 1 cut(s) 554
BsaI GGTCTC 2 cut(s) 19, 43
BsaJI CCNNGG 5 cut(s) 18, 33, 83, 957, 978
Bsc4I CCNNNNNNNGG 4 cut(s) 547, 599, 600, 979
Bse1I ACTGG 4 cut(s) 298, 412, 870, 900
BseBI CCWGG 3 cut(s) 84, 483, 558
BseDI CCNNGG 5 cut(s) 18, 33, 83, 957, 978
BseGI GGATG 4 cut(s) 93, 525, 896, 988
BseLI CCNNNNNNNGG 4 cut(s) 547, 599, 600, 979
BseMII CTCAG 3 cut(s) 209, 771, 951
BseNI ACTGG 4 cut(s) 298, 412, 870, 900
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 3 cut(s) 106, 818, 840
BsgI GTGCAG 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 5 cut(s) 23, 82, 114, 224, 531
BshNI GGYRCC 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 182
BsiSI CCGG 2 cut(s) 594, 913
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 4 cut(s) 547, 599, 600, 979
BsmAI GTCTC 5 cut(s) 19, 43, 465, 504, 612
BsmFI GGGAC 1 cut(s) 565
BsnI GGCC 5 cut(s) 23, 82, 114, 224, 531
Bso31I GGTCTC 2 cut(s) 19, 43
Bsp143I GATC 6 cut(s) 179, 313, 400, 596, 693, 909
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 5 cut(s) 30, 91, 165, 170, 950
BspANI GGCC 5 cut(s) 23, 82, 114, 224, 531
BspCNI CTCAG 3 cut(s) 208, 772, 950
BspFNI CGCG 1 cut(s) 165
BspHI TCATGA 2 cut(s) 397, 733
BspLI GGNNCC 2 cut(s) 246, 849
BspMAI CTGCAG 1 cut(s) 206
BspPI GGATC 3 cut(s) 308, 604, 904
BspT107I GGYRCC 1 cut(s) 244
BspTNI GGTCTC 2 cut(s) 19, 43
BsrBI CCGCTC 1 cut(s) 170
BsrI ACTGG 4 cut(s) 298, 412, 870, 900
BssECI CCNNGG 5 cut(s) 18, 33, 83, 957, 978
BssMI GATC 6 cut(s) 179, 313, 400, 596, 693, 909
BssNAI GTATAC 1 cut(s) 724
BssNI GRCGYC 1 cut(s) 554
BssT1I CCWWGG 4 cut(s) 18, 33, 957, 978
Bst1107I GTATAC 1 cut(s) 724
Bst2UI CCWGG 3 cut(s) 84, 483, 558
Bst4CI ACNGT 5 cut(s) 13, 249, 301, 440, 847
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 554
BstC8I GCNNGC 3 cut(s) 529, 839, 877
BstDEI CTNAG 5 cut(s) 195, 254, 756, 780, 937
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 4 cut(s) 93, 525, 896, 988
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 6 cut(s) 182, 316, 403, 599, 696, 912
BstMAI GTCTC 5 cut(s) 19, 43, 465, 504, 612
BstMBI GATC 6 cut(s) 179, 313, 400, 596, 693, 909
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 6 cut(s) 29, 88, 815, 834, 947, 983
BstNI CCWGG 3 cut(s) 84, 483, 558
BstPAI GACNNNNGTC 1 cut(s) 11
BstSCI CCNGG 4 cut(s) 82, 481, 556, 592
BstSFI CTRYAG 1 cut(s) 202
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 3 cut(s) 106, 818, 840
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 2 cut(s) 313, 909
BstYI RGATCY 2 cut(s) 313, 909
BstZ17I GTATAC 1 cut(s) 724
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 5 cut(s) 23, 82, 114, 224, 531
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 4 cut(s) 93, 525, 896, 988
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 211, 405
Cac8I GCNNGC 3 cut(s) 529, 839, 877
CciI TCATGA 2 cut(s) 397, 733
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 538
CseI GACGC 1 cut(s) 562
Csp6I GTAC 3 cut(s) 245, 436, 903
CviAII CATG 8 cut(s) 34, 130, 398, 533, 542, 639, 697, 734
CviQI GTAC 3 cut(s) 245, 436, 903
DdeI CTNAG 5 cut(s) 195, 254, 756, 780, 937
DpnI GATC 6 cut(s) 181, 315, 402, 598, 695, 911
DpnII GATC 6 cut(s) 179, 313, 400, 596, 693, 909
DraI TTTAAA 1 cut(s) 501
DraIII CACNNNGTG 1 cut(s) 286
DriI GACNNNNNGTC 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 31
Eam1105I GACNNNNNGTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 2 cut(s) 19, 965
Eco130I CCWWGG 4 cut(s) 18, 33, 957, 978
Eco147I AGGCCT 2 cut(s) 23, 114
Eco31I GGTCTC 2 cut(s) 19, 43
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 538
Eco57I CTGAAG 2 cut(s) 342, 779
EcoRI GAATTC 1 cut(s) 477
EcoRII CCWGG 3 cut(s) 82, 481, 556
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 4 cut(s) 18, 33, 957, 978
ErhI CCWWGG 4 cut(s) 18, 33, 957, 978
FaeI CATG 8 cut(s) 37, 133, 401, 536, 545, 642, 700, 737
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 1 cut(s) 565
FatI CATG 8 cut(s) 33, 129, 397, 532, 541, 638, 696, 733
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 723
Fnu4HI GCNGC 5 cut(s) 92, 95, 171, 807, 829
FokI GGATG 3 cut(s) 100, 532, 883
Fsp4HI GCNGC 5 cut(s) 92, 95, 171, 807, 829
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 164
GluI GCNGC 5 cut(s) 92, 95, 171, 807, 829
GsuI CTGGAG 1 cut(s) 887
HaeIII GGCC 5 cut(s) 23, 82, 114, 224, 531
HapII CCGG 2 cut(s) 594, 913
HgaI GACGC 1 cut(s) 562
HhaI GCGC 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 8 cut(s) 37, 133, 401, 536, 545, 642, 700, 737
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 2 cut(s) 126, 175
HpaII CCGG 2 cut(s) 594, 913
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 2 cut(s) 322, 369
Hpy188III TCNNGA 3 cut(s) 398, 459, 734
Hpy8I GTNNAC 1 cut(s) 724
Hpy99I CGWCG 2 cut(s) 13, 509
HpyAV CCTTC 3 cut(s) 327, 650, 865
HpyCH4III ACNGT 5 cut(s) 13, 249, 301, 440, 847
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 88, 815, 834, 947, 983
HpyF3I CTNAG 5 cut(s) 195, 254, 756, 780, 937
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 8 cut(s) 37, 133, 401, 536, 545, 642, 700, 737
HspAI GCGC 1 cut(s) 163
KpnI GGTACC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 6 cut(s) 179, 313, 400, 596, 693, 909
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 3 cut(s) 106, 818, 840
LweI GCATC 4 cut(s) 78, 331, 663, 973
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 3 cut(s) 572, 749, 861
MalI GATC 6 cut(s) 181, 315, 402, 598, 695, 911
MbiI CCGCTC 1 cut(s) 170
MboI GATC 6 cut(s) 179, 313, 400, 596, 693, 909
MboII GAAGA 5 cut(s) 18, 266, 672, 815, 881
MflI RGATCY 2 cut(s) 313, 909
MluCI AATT 3 cut(s) 239, 477, 647
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 9 cut(s) 34, 53, 54, 125, 235, 529, 781, 940, 946
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 3 cut(s) 425, 500, 923
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 2 cut(s) 594, 913
MspR9I CCNGG 4 cut(s) 84, 483, 558, 594
MvaI CCWGG 3 cut(s) 84, 483, 558
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 6 cut(s) 29, 88, 815, 834, 947, 983
NciI CCSGG 1 cut(s) 594
NcoI CCATGG 1 cut(s) 33
NdeII GATC 6 cut(s) 179, 313, 400, 596, 693, 909
NlaIII CATG 8 cut(s) 37, 133, 401, 536, 545, 642, 700, 737
NlaIV GGNNCC 2 cut(s) 246, 849
NmeAIII GCCGAG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 572
PagI TCATGA 2 cut(s) 397, 733
PceI AGGCCT 2 cut(s) 23, 114
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 126
PflMI CCANNNNNTGG 1 cut(s) 547
PfoI TCCNGGA 1 cut(s) 592
PkrI GCNGC 5 cut(s) 93, 96, 172, 808, 830
Ple19I CGATCG 1 cut(s) 182
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PshAI GACNNNNGTC 1 cut(s) 11
Psp6I CCWGG 3 cut(s) 82, 481, 556
PspGI CCWGG 3 cut(s) 82, 481, 556
PspN4I GGNNCC 2 cut(s) 246, 849
PspPI GGNCC 1 cut(s) 538
PstI CTGCAG 1 cut(s) 206
PsuI RGATCY 2 cut(s) 313, 909
PvuI CGATCG 1 cut(s) 182
RsaI GTAC 3 cut(s) 246, 437, 904
RsaNI GTAC 3 cut(s) 245, 436, 903
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 3 cut(s) 425, 500, 923
SatI GCNGC 5 cut(s) 92, 95, 171, 807, 829
Sau3AI GATC 6 cut(s) 179, 313, 400, 596, 693, 909
Sau96I GGNCC 1 cut(s) 538
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 4 cut(s) 84, 483, 558, 594
SetI ASST 9 cut(s) 99, 328, 437, 450, 540, 574, 584, 667, 781
SfaNI GCATC 4 cut(s) 78, 331, 663, 973
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 396
Sse9I AATT 3 cut(s) 239, 477, 647
SseBI AGGCCT 2 cut(s) 23, 114
SsiI CCGC 5 cut(s) 30, 91, 165, 170, 950
SspI AATATT 1 cut(s) 609
SspMI CTAG 1 cut(s) 54
StuI AGGCCT 2 cut(s) 23, 114
StyD4I CCNGG 4 cut(s) 82, 481, 556, 592
StyI CCWWGG 4 cut(s) 18, 33, 957, 978
TaaI ACNGT 5 cut(s) 13, 249, 301, 440, 847
TaqI TCGA 2 cut(s) 178, 237
TaqII GACCGA 1 cut(s) 483
TasI AATT 3 cut(s) 239, 477, 647
TatI WGTACW 1 cut(s) 902
TauI GCSGC 2 cut(s) 94, 173
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 3 cut(s) 425, 500, 923
Tru9I TTAA 3 cut(s) 425, 500, 923
TscAI CASTG 2 cut(s) 211, 412
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 3 cut(s) 94, 806, 828
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 2 cut(s) 118, 750
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 2 cut(s) 211, 412
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 538
XapI RAATTY 1 cut(s) 477
XmiI GTMKAC 1 cut(s) 723
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.