RLG00000015038

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000538
Physical Location & Seq
Forward (+)
60938493 .. 60939740
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015038

Sequence Viewer

Length: 516 bp
ATGGTTGATGTTGGTGATCTCATATGGAAGCCATTTCCTGACTTCAATTTTCATCCACTAGATGCCAAATTGCCAACTCGGAATGAGTTGAAGGTGGCCTCAGACCTATCAGCTTCAATTGCTCAGAAGAAGTTTCTGCTCCAGCAACAAACTTCCAGGTATACCAAGGCGAAGAAAGAACTTCTTTCCTTCGAGAAGAAAATTGCCGACCTTAAGGCCACAATTGAAAAGTTGGGAGCCTCTGTAGCCACAGAAAAGAGCAAGACGGCGAAGATTGATGAGGTTTTGGATTCCATTGAGACACAAGTAACTACTGCCAAAGATGGATTGGCCTCGGACTTGGCAAAAGTGTATGCCATGGAGGGAAAGCCCCAAGCTGCTAACCAGTTAGTAGGTCGACGACAACCAGCATGGGATACGATAAGGACTACTTTACCAAGTCAATTGAGCTTGTATACTGATCTTTTTGATACCGGGCAAATTGCAGTGACTAAAAATCTGATCTTAGCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

172

Amino Acids

18.88

Weight (kDa)

9.0

Isoelectric Point (pI)

24.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 161, 397, 455
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 4 cut(s) 46, 91, 117, 227
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 3 cut(s) 113, 377, 450
AluI AGCT 3 cut(s) 113, 377, 450
Alw26I GTCTC 1 cut(s) 293
AoxI GGCC 3 cut(s) 96, 216, 330
ApeKI GCWGC 1 cut(s) 377
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 26
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 1 cut(s) 157
BciVI GTATCC 1 cut(s) 409
BcnI CCSGG 1 cut(s) 475
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 212
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 2 cut(s) 157, 475
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 2 cut(s) 157, 475
BmsI GCATC 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 475
BsaJI CCNNGG 3 cut(s) 165, 333, 357
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bse1I ACTGG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 3 cut(s) 165, 333, 357
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 114, 137
BseNI ACTGG 1 cut(s) 385
BseXI GCAGC 1 cut(s) 364
BshFI GGCC 3 cut(s) 98, 218, 332
BsiSI CCGG 1 cut(s) 474
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 3 cut(s) 98, 218, 332
Bsp143I GATC 3 cut(s) 16, 460, 501
Bsp19I CCATGG 1 cut(s) 357
BspANI GGCC 3 cut(s) 98, 218, 332
BspCNI CTCAG 2 cut(s) 113, 136
BspLI GGNNCC 1 cut(s) 238
BspTI CTTAAG 1 cut(s) 212
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 3 cut(s) 165, 333, 357
BssMI GATC 3 cut(s) 16, 460, 501
BssNAI GTATAC 2 cut(s) 162, 456
BssT1I CCWWGG 2 cut(s) 165, 357
Bst1107I GTATAC 2 cut(s) 162, 456
Bst2UI CCWGG 1 cut(s) 157
BstAFI CTTAAG 1 cut(s) 212
BstDEI CTNAG 3 cut(s) 100, 123, 505
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 3 cut(s) 19, 463, 504
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 3 cut(s) 16, 460, 501
BstMWI GCNNNNNNNGC 2 cut(s) 119, 245
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 155, 473
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 364
BstZ17I GTATAC 2 cut(s) 162, 456
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 3 cut(s) 98, 218, 332
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 2 cut(s) 492, 516
BtsIMutI CAGTG 2 cut(s) 492, 516
CviAII CATG 2 cut(s) 358, 411
DdeI CTNAG 3 cut(s) 100, 123, 505
DpnI GATC 3 cut(s) 18, 462, 503
DpnII GATC 3 cut(s) 16, 460, 501
Eco130I CCWWGG 2 cut(s) 165, 357
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 165, 357
ErhI CCWWGG 2 cut(s) 165, 357
FaeI CATG 2 cut(s) 361, 414
FaiI YATR 7 cut(s) 23, 25, 162, 354, 359, 412, 456
FalI AAGNNNNNCTT 4 cut(s) 168, 200, 415, 447
FatI CATG 2 cut(s) 357, 410
FauNDI CATATG 1 cut(s) 23
FblI GTMKAC 3 cut(s) 161, 397, 455
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 3 cut(s) 98, 218, 332
HapII CCGG 1 cut(s) 474
Hin1II CATG 2 cut(s) 361, 414
HincII GTYRAC 1 cut(s) 398
HindII GTYRAC 1 cut(s) 398
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 474
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 3 cut(s) 162, 398, 456
Hpy188I TCNGA 5 cut(s) 81, 103, 126, 337, 501
Hpy188III TCNNGA 2 cut(s) 38, 193
Hpy8I GTNNAC 3 cut(s) 162, 398, 456
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 2 cut(s) 85, 199
HpyCH4V TGCA 1 cut(s) 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 245
HpyF3I CTNAG 3 cut(s) 100, 123, 505
Hsp92II CATG 2 cut(s) 361, 414
Kzo9I GATC 3 cut(s) 16, 460, 501
LmnI GCTCC 2 cut(s) 144, 236
LpnPI CCDG 7 cut(s) 51, 142, 155, 169, 398, 420, 487
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 307, 487
MalI GATC 3 cut(s) 18, 462, 503
MboI GATC 3 cut(s) 16, 460, 501
MboII GAAGA 4 cut(s) 139, 184, 208, 283
MfeI CAATTG 3 cut(s) 117, 222, 443
MluCI AATT 7 cut(s) 46, 68, 117, 201, 222, 443, 480
MnlI CCTC 5 cut(s) 109, 250, 274, 343, 355
MseI TTAA 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 2 cut(s) 157, 475
MunI CAATTG 3 cut(s) 117, 222, 443
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 119, 245
NciI CCSGG 1 cut(s) 475
NcoI CCATGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 23
NdeII GATC 3 cut(s) 16, 460, 501
NlaIII CATG 2 cut(s) 361, 414
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 487
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 238
SalI GTCGAC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 3 cut(s) 16, 460, 501
ScrFI CCNGG 2 cut(s) 157, 475
SetI ASST 9 cut(s) 96, 108, 115, 161, 213, 285, 379, 397, 452
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 7 cut(s) 46, 68, 117, 201, 222, 443, 480
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 155, 473
StyI CCWWGG 2 cut(s) 165, 357
TaqI TCGA 2 cut(s) 192, 397
TasI AATT 7 cut(s) 46, 68, 117, 201, 222, 443, 480
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 492, 516
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 1 cut(s) 41
TspRI CASTG 2 cut(s) 492, 516
Vha464I CTTAAG 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XmiI GTMKAC 3 cut(s) 161, 397, 455
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.