Rmu_sc0003898.1_g000017

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003898.1
OG0000538
Physical Location & Seq
Reverse (-)
77325 .. 81065
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003898.1_g000017.1.cds

Sequence Viewer

Length: 1545 bp
atgagccagaaacactgtcatcatcacttggcttttgtgtcctgtgatctcactggggttcccagccctgacagtactccttgcaaaaggtgtcagcatccccaggcgaattggttttgtttgtcctgtaaggacgtcctctgtaatgttaacaaacatgatggtgagcattatgtgcagacaaagcattgtcttcaagtcagctgccgtaataaatcaatttggtgttactcctgccgtaaatatctagatgctcaagtgatccaacaattgtgggccaagcagagtcgatcatcttcagccaagctcgagagcattgatgcaatggttgttaatgttactggtctcttgtccaagccaattcctagcatcaatgttcatccaaagttggatgctccgttgtttgttggccaggacgagcttgccttggcgaaggagggactccagaagatctttgattgcgggttaaaagctctagctgatcccaaaatgcaagaagcgtttctcctttactcagccacactgctatcagccgagtcatgcccctcagaattgaaggttaacgtttcatcattcatatgtaatctttcggaagaaacctctgctttcattaaagctcaagatgagttgaaggtggcctcagagttatcagtctcgattacccagaagaagtttgttgtgcgacaacaaatttcaaagtatgatgaggtaaagaaagaaatgactgcctcggacgagaaagttgccaaatataagtccatgatcaaagagatggaggcacaaatcaaagggttggaagcttgtttagccgcagaagtgagcaacaggaaaaaaattgatgagcttatcgattcgatcgatacacaactcaccactgcgagagatggattggtctctgacttggcacaagtgtcttccatggagggaacgatccaagcagcttaccagttaataactcgaaaacagtcgcactgggataacctaaaaactatgtttactaggtctgcaattgcatacgccaccatgagtcgacatcctagtgtgaagtgggctcagcagcctgatacactttgcatcactattgagttgcctgatgccgaggacgtaaagcttaaactggagcctgaaggaaagtttctattctctgctacaactggagcagaaaagacaccttatgtagttgatcttgatctctatgacaagattgatgtgaatgagattatttatactgttggctcgggaaatatctttcacctagtgaaaaaagctgaaaataaatggtggagcagattgataaaacaagaaggaaaagctcctggaggagacggcgcggcacggcttgcccaagggaggccaggggtcgtgcggaggggtctgcggtcgggtggagtcgccagtgacctgttttgcggtgctgcacagaacctgcagttgcaggtgaggtggctgcccagaaatcggcaagcccgacctcctccgaccttgaacggtccgagacgcctccggcctccctcctgcaagcccctggccgccgtcgccacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

514

Amino Acids

57.03

Weight (kDa)

8.79

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1426
AatII GACGTC 1 cut(s) 138
Acc36I ACCTGC 2 cut(s) 1426, 1434
AccI GTMKAC 1 cut(s) 1030
AccII CGCG 1 cut(s) 1331
AciI CCGC 7 cut(s) 462, 810, 1331, 1366, 1378, 1410, 1530
AclI AACGTT 1 cut(s) 564
AclWI GGATC 3 cut(s) 256, 476, 925
AcoI YGGCCR 2 cut(s) 409, 1527
AcsI RAATTY 1 cut(s) 690
AcuI CTGAAG 2 cut(s) 282, 1146
AcyI GRCGYC 2 cut(s) 135, 1498
AdeI CACNNNGTG 1 cut(s) 1258
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 1350, 1458
AgsI TTSAA 5 cut(s) 197, 556, 631, 696, 1486
AjnI CCWGG 5 cut(s) 102, 411, 1315, 1354, 1524
Alw26I GTCTC 5 cut(s) 350, 658, 898, 1317, 1489
AlwI GGATC 3 cut(s) 256, 476, 925
AlwNI CAGNNNCTG 1 cut(s) 1426
Ama87I CYCGRG 2 cut(s) 308, 1237
AoxI GGCC 6 cut(s) 276, 409, 636, 1352, 1505, 1527
ApeKI GCWGC 5 cut(s) 204, 938, 1057, 1415, 1447
ApoI RAATTY 1 cut(s) 690
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 1331
AspS9I GGNCC 2 cut(s) 276, 1490
AsuHPI GGTGA 4 cut(s) 176, 862, 1244, 1450
AvaI CYCGRG 2 cut(s) 308, 1237
AvaII GGWCC 1 cut(s) 1490
BalI TGGCCA 1 cut(s) 411
BanII GRGCYC 1 cut(s) 1054
BbsI GAAGAC 2 cut(s) 185, 906
BbvI GCAGC 5 cut(s) 191, 950, 1069, 1402, 1434
BccI CCATC 3 cut(s) 155, 766, 878
BceAI ACGGC 5 cut(s) 192, 222, 1342, 1352, 1517
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BciT130I CCWGG 5 cut(s) 104, 413, 1317, 1356, 1526
BclI TGATCA 1 cut(s) 762
BcoDI GTCTC 5 cut(s) 350, 658, 898, 1317, 1489
BfaI CTAG 7 cut(s) 248, 366, 476, 999, 1038, 1256, 1543
BfmI CTRYAG 1 cut(s) 1427
BfuAI ACCTGC 2 cut(s) 1426, 1434
BglII AGATCT 1 cut(s) 450
BisI GCNGC 8 cut(s) 205, 810, 939, 1058, 1332, 1416, 1448, 1530
BlpI GCTNAGC 1 cut(s) 1053
BlsI GCNGC 8 cut(s) 206, 811, 940, 1059, 1333, 1417, 1449, 1531
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 5 cut(s) 104, 413, 1317, 1356, 1526
Bme18I GGWCC 1 cut(s) 1490
BmeT110I CYCGRG 2 cut(s) 308, 1237
BmgT120I GGNCC 2 cut(s) 276, 1490
BmiI GGNNCC 2 cut(s) 60, 1122
BmrFI CCNGG 5 cut(s) 104, 413, 1317, 1356, 1526
BmrI ACTGGG 2 cut(s) 63, 982
BmsI GCATC 7 cut(s) 106, 241, 310, 378, 382, 1083, 1084
BmuI ACTGGG 2 cut(s) 63, 982
BpiI GAAGAC 2 cut(s) 185, 906
BpmI CTGGAG 4 cut(s) 428, 1139, 1176, 1338
Bpu1102I GCTNAGC 1 cut(s) 1053
BpuEI CTTGAG 2 cut(s) 240, 603
Bsa29I ATCGAT 2 cut(s) 849, 858
BsaBI GATNNNNATC 1 cut(s) 1188
BsaHI GRCGYC 2 cut(s) 135, 1498
BsaI GGTCTC 2 cut(s) 350, 898
BsaJI CCNNGG 8 cut(s) 102, 426, 729, 918, 1098, 1345, 1355, 1524
Bsc4I CCNNNNNNNGG 2 cut(s) 1350, 1458
Bse1I ACTGG 7 cut(s) 58, 346, 946, 977, 1122, 1159, 1395
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 1188
BseBI CCWGG 5 cut(s) 104, 413, 1317, 1356, 1526
BseCI ATCGAT 2 cut(s) 849, 858
BseDI CCNNGG 8 cut(s) 102, 426, 729, 918, 1098, 1345, 1355, 1524
BseGI GGATG 4 cut(s) 97, 379, 397, 1033
BseJI GATNNNNATC 1 cut(s) 1188
BseLI CCNNNNNNNGG 2 cut(s) 1350, 1458
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 4 cut(s) 528, 561, 654, 1067
BseNI ACTGG 7 cut(s) 58, 346, 946, 977, 1122, 1159, 1395
BseRI GAGGAG 2 cut(s) 1335, 1464
BseXI GCAGC 5 cut(s) 191, 950, 1069, 1402, 1434
BseYI CCCAGC 1 cut(s) 62
BsgI GTGCAG 2 cut(s) 197, 1401
Bsh1236I CGCG 1 cut(s) 1331
Bsh1285I CGRYCG 2 cut(s) 858, 1382
BshFI GGCC 6 cut(s) 278, 411, 638, 1354, 1507, 1529
BshVI ATCGAT 2 cut(s) 849, 858
BsiEI CGRYCG 2 cut(s) 858, 1382
BsiHKCI CYCGRG 2 cut(s) 308, 1237
BsiSI CCGG 1 cut(s) 1504
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 2 cut(s) 1350, 1458
BsmAI GTCTC 5 cut(s) 350, 658, 898, 1317, 1489
BsmBI CGTCTC 2 cut(s) 1317, 1489
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 6 cut(s) 278, 411, 638, 1354, 1507, 1529
Bso31I GGTCTC 2 cut(s) 350, 898
BsoBI CYCGRG 2 cut(s) 308, 1237
Bsp1286I GDGCHC 1 cut(s) 1054
Bsp1720I GCTNAGC 1 cut(s) 1053
Bsp19I CCATGG 1 cut(s) 918
BspACI CCGC 7 cut(s) 462, 810, 1331, 1366, 1378, 1410, 1530
BspANI GGCC 6 cut(s) 278, 411, 638, 1354, 1507, 1529
BspCNI CTCAG 4 cut(s) 527, 560, 653, 1066
BspDI ATCGAT 2 cut(s) 849, 858
BspFNI CGCG 1 cut(s) 1331
BspLI GGNNCC 2 cut(s) 60, 1122
BspMAI CTGCAG 1 cut(s) 1431
BspMI ACCTGC 2 cut(s) 1426, 1434
BspPI GGATC 3 cut(s) 256, 476, 925
BspTNI GGTCTC 2 cut(s) 350, 898
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 7 cut(s) 58, 346, 946, 977, 1122, 1159, 1395
BssECI CCNNGG 8 cut(s) 102, 426, 729, 918, 1098, 1345, 1355, 1524
BssNI GRCGYC 2 cut(s) 135, 1498
BssT1I CCWWGG 3 cut(s) 426, 918, 1345
Bst2UI CCWGG 5 cut(s) 104, 413, 1317, 1356, 1526
Bst4CI ACNGT 5 cut(s) 17, 74, 966, 1231, 1490
BstACI GRCGYC 2 cut(s) 135, 1498
BstAPI GCANNNNNTGC 2 cut(s) 175, 1340
BstC8I GCNNGC 4 cut(s) 423, 1341, 1464, 1520
BstDEI CTNAG 4 cut(s) 514, 547, 640, 1053
BstDSI CCRYGG 1 cut(s) 918
BstF5I GGATG 4 cut(s) 97, 379, 397, 1033
BstFNI CGCG 1 cut(s) 1331
BstHHI GCGC 1 cut(s) 1331
BstMAI GTCTC 5 cut(s) 350, 658, 898, 1317, 1489
BstMCI CGRYCG 2 cut(s) 858, 1382
BstMWI GCNNNNNNNGC 5 cut(s) 175, 184, 806, 1340, 1535
BstNI CCWGG 5 cut(s) 104, 413, 1317, 1356, 1526
BstSCI CCNGG 5 cut(s) 102, 411, 1315, 1354, 1524
BstSFI CTRYAG 1 cut(s) 1427
BstUI CGCG 1 cut(s) 1331
BstV1I GCAGC 5 cut(s) 191, 950, 1069, 1402, 1434
BstV2I GAAGAC 2 cut(s) 185, 906
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
Bsu15I ATCGAT 2 cut(s) 849, 858
BsuRI GGCC 6 cut(s) 278, 411, 638, 1354, 1507, 1529
BsuTUI ATCGAT 2 cut(s) 849, 858
BtgI CCRYGG 1 cut(s) 918
BtsCI GGATG 4 cut(s) 97, 379, 397, 1033
BtsI GCAGTG 2 cut(s) 521, 873
BtsIMutI CAGTG 6 cut(s) 13, 51, 521, 873, 970, 1402
BveI ACCTGC 2 cut(s) 1426, 1434
Cac8I GCNNGC 4 cut(s) 423, 1341, 1464, 1520
CaiI CAGNNNCTG 1 cut(s) 1426
CfoI GCGC 1 cut(s) 1331
Cfr13I GGNCC 2 cut(s) 276, 1490
ClaI ATCGAT 2 cut(s) 849, 858
CpoI CGGWCCG 1 cut(s) 1490
CseI GACGC 1 cut(s) 1506
Csp6I GTAC 1 cut(s) 75
CspCI CAANNNNNGTGG 2 cut(s) 254, 289
CspI CGGWCCG 1 cut(s) 1490
CviAII CATG 5 cut(s) 158, 540, 760, 919, 1024
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 4 cut(s) 514, 547, 640, 1053
DraIII CACNNNGTG 1 cut(s) 1258
EaeI YGGCCR 2 cut(s) 409, 1527
Eco130I CCWWGG 3 cut(s) 426, 918, 1345
Eco24I GRGCYC 1 cut(s) 1054
Eco31I GGTCTC 2 cut(s) 350, 898
Eco47I GGWCC 1 cut(s) 1490
Eco57I CTGAAG 2 cut(s) 282, 1146
Eco88I CYCGRG 2 cut(s) 308, 1237
EcoRII CCWGG 5 cut(s) 102, 411, 1315, 1354, 1524
EcoT14I CCWWGG 3 cut(s) 426, 918, 1345
EcoT38I GRGCYC 1 cut(s) 1054
ErhI CCWWGG 3 cut(s) 426, 918, 1345
Esp3I CGTCTC 2 cut(s) 1317, 1489
FaeI CATG 5 cut(s) 161, 543, 763, 922, 1027
FaqI GGGAC 1 cut(s) 453
FatI CATG 5 cut(s) 157, 539, 759, 918, 1023
FauI CCCGC 1 cut(s) 455
FauNDI CATATG 1 cut(s) 578
FbaI TGATCA 1 cut(s) 762
FblI GTMKAC 1 cut(s) 1030
Fnu4HI GCNGC 8 cut(s) 205, 810, 939, 1058, 1332, 1416, 1448, 1530
FokI GGATG 4 cut(s) 84, 366, 404, 1020
FriOI GRGCYC 1 cut(s) 1054
Fsp4HI GCNGC 8 cut(s) 205, 810, 939, 1058, 1332, 1416, 1448, 1530
FspBI CTAG 7 cut(s) 248, 366, 476, 999, 1038, 1256, 1543
GlaI GCGC 1 cut(s) 1330
GluI GCNGC 8 cut(s) 205, 810, 939, 1058, 1332, 1416, 1448, 1530
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 4 cut(s) 428, 1139, 1176, 1338
HaeIII GGCC 6 cut(s) 278, 411, 638, 1354, 1507, 1529
HapII CCGG 1 cut(s) 1504
HgaI GACGC 1 cut(s) 1506
HhaI GCGC 1 cut(s) 1331
Hin1I GRCGYC 2 cut(s) 135, 1498
Hin1II CATG 5 cut(s) 161, 543, 763, 922, 1027
Hin6I GCGC 1 cut(s) 1329
HinP1I GCGC 1 cut(s) 1329
HincII GTYRAC 3 cut(s) 151, 562, 1031
HindII GTYRAC 3 cut(s) 151, 562, 1031
HindIII AAGCTT 2 cut(s) 798, 1109
HinfI GANTC 6 cut(s) 286, 441, 536, 851, 1027, 1389
HpaI GTTAAC 2 cut(s) 151, 562
HpaII CCGG 1 cut(s) 1504
HphI GGTGA 4 cut(s) 176, 862, 1244, 1450
Hpy166II GTNNAC 4 cut(s) 151, 562, 996, 1031
Hpy188I TCNGA 7 cut(s) 550, 592, 643, 733, 898, 1479, 1494
Hpy188III TCNNGA 7 cut(s) 248, 310, 445, 620, 655, 1187, 1239
Hpy8I GTNNAC 4 cut(s) 151, 562, 996, 1031
Hpy99I CGWCG 1 cut(s) 1538
HpyAV CCTTC 5 cut(s) 427, 550, 625, 1121, 1298
HpyCH4III ACNGT 5 cut(s) 17, 74, 966, 1231, 1490
HpyCH4IV ACGT 3 cut(s) 135, 564, 1104
HpyF10VI GCNNNNNNNGC 5 cut(s) 175, 184, 806, 1340, 1535
HpyF3I CTNAG 4 cut(s) 514, 547, 640, 1053
HpySE526I ACGT 3 cut(s) 135, 564, 1104
Hsp92I GRCGYC 2 cut(s) 135, 1498
Hsp92II CATG 5 cut(s) 161, 543, 763, 922, 1027
HspAI GCGC 1 cut(s) 1329
Ksp22I TGATCA 1 cut(s) 762
KspAI GTTAAC 2 cut(s) 151, 562
LmnI GCTCC 5 cut(s) 400, 1120, 1157, 1284, 1318
Lsp1109I GCAGC 5 cut(s) 191, 950, 1069, 1402, 1434
LweI GCATC 7 cut(s) 106, 241, 310, 378, 382, 1083, 1084
MaeI CTAG 7 cut(s) 248, 366, 476, 999, 1038, 1256, 1543
MaeII ACGT 3 cut(s) 135, 564, 1104
MaeIII GTNAC 3 cut(s) 227, 337, 1397
MboII GAAGA 6 cut(s) 185, 288, 460, 605, 679, 906
MfeI CAATTG 2 cut(s) 269, 1008
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 1054
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 8 cut(s) 109, 219, 269, 360, 551, 690, 834, 1008
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 5 cut(s) 295, 435, 545, 1036, 1398
MmeI TCCRAC 4 cut(s) 289, 369, 774, 1502
Mox20I TGGCCA 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 501
MscI TGGCCA 1 cut(s) 411
MseI TTAA 7 cut(s) 150, 333, 467, 561, 612, 950, 1113
MslI CAYNNNNRTG 3 cut(s) 162, 577, 1038
Msp20I TGGCCA 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 1 cut(s) 1504
MspR9I CCNGG 5 cut(s) 104, 413, 1317, 1356, 1526
MunI CAATTG 2 cut(s) 269, 1008
MvaI CCWGG 5 cut(s) 104, 413, 1317, 1356, 1526
MvnI CGCG 1 cut(s) 1331
MwoI GCNNNNNNNGC 5 cut(s) 175, 184, 806, 1340, 1535
NcoI CCATGG 1 cut(s) 918
NdeI CATATG 1 cut(s) 578
NlaIII CATG 5 cut(s) 161, 543, 763, 922, 1027
NlaIV GGNNCC 2 cut(s) 60, 1122
NmeAIII GCCGAG 2 cut(s) 559, 1123
NmuCI GTSAC 1 cut(s) 1397
PaeR7I CTCGAG 1 cut(s) 308
PaqCI CACCTGC 1 cut(s) 1426
PcsI WCGNNNNNNNCGW 2 cut(s) 855, 1465
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 851
PfoI TCCNGGA 1 cut(s) 1315
PkrI GCNGC 8 cut(s) 206, 811, 940, 1059, 1333, 1417, 1449, 1531
Ple19I CGATCG 1 cut(s) 858
PleI GAGTC 5 cut(s) 294, 435, 544, 1035, 1397
PpsI GAGTC 5 cut(s) 294, 435, 544, 1035, 1397
Psp1406I AACGTT 1 cut(s) 564
Psp6I CCWGG 5 cut(s) 102, 411, 1315, 1354, 1524
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 5 cut(s) 102, 411, 1315, 1354, 1524
PspN4I GGNNCC 2 cut(s) 60, 1122
PspPI GGNCC 2 cut(s) 276, 1490
PstI CTGCAG 1 cut(s) 1431
PstNI CAGNNNCTG 1 cut(s) 1426
PsuI RGATCY 1 cut(s) 450
PvuI CGATCG 1 cut(s) 858
PvuII CAGCTG 1 cut(s) 204
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
RseI CAYNNNNRTG 3 cut(s) 162, 577, 1038
Rsr2I CGGWCCG 1 cut(s) 1490
RsrII CGGWCCG 1 cut(s) 1490
SalI GTCGAC 1 cut(s) 1029
SaqAI TTAA 7 cut(s) 150, 333, 467, 561, 612, 950, 1113
SatI GCNGC 8 cut(s) 205, 810, 939, 1058, 1332, 1416, 1448, 1530
Sau96I GGNCC 2 cut(s) 276, 1490
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 5 cut(s) 295, 435, 545, 1036, 1398
ScrFI CCNGG 5 cut(s) 104, 413, 1317, 1356, 1526
SduI GDGCHC 1 cut(s) 1054
SfaNI GCATC 7 cut(s) 106, 241, 310, 378, 382, 1083, 1084
SfcI CTRYAG 1 cut(s) 1427
Sfr274I CTCGAG 1 cut(s) 308
SinI GGWCC 1 cut(s) 1490
SlaI CTCGAG 1 cut(s) 308
SmiMI CAYNNNNRTG 3 cut(s) 162, 577, 1038
SmlI CTYRAG 3 cut(s) 255, 308, 618
SmoI CTYRAG 3 cut(s) 255, 308, 618
Sse9I AATT 8 cut(s) 109, 219, 269, 360, 551, 690, 834, 1008
SsiI CCGC 7 cut(s) 462, 810, 1331, 1366, 1378, 1410, 1530
SspMI CTAG 7 cut(s) 248, 366, 476, 999, 1038, 1256, 1543
StyD4I CCNGG 5 cut(s) 102, 411, 1315, 1354, 1524
StyI CCWWGG 3 cut(s) 426, 918, 1345
TaaI ACNGT 5 cut(s) 17, 74, 966, 1231, 1490
TaiI ACGT 3 cut(s) 138, 567, 1107
TaqI TCGA 8 cut(s) 289, 309, 656, 849, 854, 858, 958, 1030
TasI AATT 8 cut(s) 109, 219, 269, 360, 551, 690, 834, 1008
TatI WGTACW 1 cut(s) 74
TauI GCSGC 3 cut(s) 812, 1334, 1532
TfiI GAWTC 1 cut(s) 851
Tru1I TTAA 7 cut(s) 150, 333, 467, 561, 612, 950, 1113
Tru9I TTAA 7 cut(s) 150, 333, 467, 561, 612, 950, 1113
TscAI CASTG 6 cut(s) 20, 58, 528, 880, 977, 1402
TseFI GTSAC 1 cut(s) 1397
TseI GCWGC 5 cut(s) 204, 938, 1057, 1415, 1447
Tsp45I GTSAC 1 cut(s) 1397
TspDTI ATGAA 4 cut(s) 368, 558, 565, 598
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 6 cut(s) 20, 58, 528, 880, 977, 1402
VpaK11BI GGWCC 1 cut(s) 1490
XapI RAATTY 1 cut(s) 690
XbaI TCTAGA 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 1030
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 7 cut(s) 248, 366, 476, 999, 1038, 1256, 1543
ZraI GACGTC 1 cut(s) 136
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.