Rh6DG045200

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000538
Physical Location & Seq
Reverse (-)
4789044 .. 4789854
811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG045200.1

Sequence Viewer

Length: 735 bp
ATGGCCAAGGGTCGATCATCTTCAGCCAAGCTAGAGAGCATTGATGCAATGGTTGTTGATGTTATTGATCTCTTGTCTAAACCATTTCCTAGCATCAGTGTTCATCCACAGTTGGATGCTCAGTCCTTTGTTGGCCAGGATGAGCTTGCATTAGCCAAGGAGGGACTCCGGAAGATCTTTGATCGCGGGTTAAAAGCTCTAGCTGATCCCAAAGTGCAAGAAGAGTTTCTCCTTTACTCAGCCACACTGCTATCAGCCGAGTCATGCCCCTCAGAATTGAAGGTGAACCTCTCATCATTCAGATGCAATATTTCGGAGGAAACCTCTGCTTTCATCAAAGCTCAAGATGAGTTGAAGGTGGCCTCAGACTTATCAGCCTCAATCACTCAGAAGAAGTTTGTAGTGCGGCAACAAACTTCAAAGTATGATGAGGTGAAGAAAGAAATTGTCGCCTCGGACGAGAAAGTTGCCAACTTCAAGGCCATGATCAAAGAGTTGGAAGCACAAATAAAAAGGTTGGAAGCTTGTTTAGCCACGGAAGAGAGCAACAGGGCAAAGATTGATGAGGCTCTCGATTCTATTGAGACACAAGTCACCACCACGAGAGATGGATTGGTCTCAGACTTGGCACAAGTGTCTTCCATGGAAGGATCGACCCAAGCAGCTAACGAGTTAGTAGCTCGAAAACAGTCGGACTGGGATAATCTAAAGCTTAGTTTTACCAAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

244

Amino Acids

26.84

Weight (kDa)

5.04

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 168
AciI CCGC 2 cut(s) 186, 406
AclWI GGATC 2 cut(s) 200, 658
AcoI YGGCCR 2 cut(s) 3, 133
AcuI CTGAAG 1 cut(s) 6
AgsI TTSAA 4 cut(s) 280, 355, 420, 478
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 9 cut(s) 31, 145, 197, 203, 341, 524, 665, 680, 712
AluI AGCT 9 cut(s) 31, 145, 197, 203, 341, 524, 665, 680, 712
Alw26I GTCTC 2 cut(s) 578, 622
AlwI GGATC 2 cut(s) 200, 658
Aor13HI TCCGGA 1 cut(s) 168
AoxI GGCC 4 cut(s) 3, 133, 360, 480
ApeKI GCWGC 1 cut(s) 662
Asp700I GAANNNNTTC 1 cut(s) 225
AsuHPI GGTGA 3 cut(s) 295, 445, 586
BalI TGGCCA 2 cut(s) 5, 135
BauI CACGAG 1 cut(s) 601
BbsI GAAGAC 1 cut(s) 630
BbvI GCAGC 1 cut(s) 674
BccI CCATC 1 cut(s) 602
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 1 cut(s) 137
BclI TGATCA 1 cut(s) 486
BcoDI GTCTC 2 cut(s) 578, 622
BfaI CTAG 3 cut(s) 32, 90, 200
BglII AGATCT 1 cut(s) 174
BisI GCNGC 2 cut(s) 407, 663
BlsI GCNGC 2 cut(s) 408, 664
Bme1390I CCNGG 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 137
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 4 cut(s) 34, 102, 106, 293
BmuI ACTGGG 1 cut(s) 706
BoxI GACNNNNGTC 1 cut(s) 590
BpiI GAAGAC 1 cut(s) 630
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpuEI CTTGAG 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 5 cut(s) 6, 156, 453, 534, 642
BsaWI WCCGGW 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 701
Bse3DI GCAATG 1 cut(s) 54
BseAI TCCGGA 1 cut(s) 168
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 5 cut(s) 6, 156, 453, 534, 642
BseGI GGATG 3 cut(s) 103, 121, 145
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 6 cut(s) 134, 252, 285, 378, 401, 633
BseNI ACTGG 1 cut(s) 701
BseXI GCAGC 1 cut(s) 674
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 4 cut(s) 5, 135, 362, 482
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 578, 622
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 4 cut(s) 5, 135, 362, 482
Bso31I GGTCTC 1 cut(s) 622
Bsp13I TCCGGA 1 cut(s) 168
Bsp143I GATC 7 cut(s) 14, 67, 174, 181, 205, 486, 650
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 2 cut(s) 186, 406
BspANI GGCC 4 cut(s) 5, 135, 362, 482
BspCNI CTCAG 6 cut(s) 133, 251, 284, 377, 400, 632
BspEI TCCGGA 1 cut(s) 168
BspFNI CGCG 1 cut(s) 186
BspPI GGATC 2 cut(s) 200, 658
BspTNI GGTCTC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 701
BssECI CCNNGG 5 cut(s) 6, 156, 453, 534, 642
BssMI GATC 7 cut(s) 14, 67, 174, 181, 205, 486, 650
BssSI CACGAG 1 cut(s) 601
BssT1I CCWWGG 3 cut(s) 6, 156, 642
Bst2BI CACGAG 1 cut(s) 601
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 111, 690
Bst6I CTCTTC 2 cut(s) 216, 534
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 7 cut(s) 120, 238, 271, 364, 387, 619, 713
BstDSI CCRYGG 2 cut(s) 534, 642
BstF5I GGATG 3 cut(s) 103, 121, 145
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 7 cut(s) 17, 70, 177, 184, 208, 489, 653
BstMAI GTCTC 2 cut(s) 578, 622
BstMBI GATC 7 cut(s) 14, 67, 174, 181, 205, 486, 650
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 1 cut(s) 137
BstPAI GACNNNNGTC 1 cut(s) 590
BstSCI CCNGG 1 cut(s) 135
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 674
BstV2I GAAGAC 1 cut(s) 630
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 4 cut(s) 5, 135, 362, 482
BtgI CCRYGG 2 cut(s) 534, 642
BtsCI GGATG 3 cut(s) 103, 121, 145
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 2 cut(s) 103, 245
Cac8I GCNNGC 1 cut(s) 147
CviAII CATG 4 cut(s) 264, 484, 643, 732
DdeI CTNAG 7 cut(s) 120, 238, 271, 364, 387, 619, 713
DpnI GATC 7 cut(s) 16, 69, 176, 183, 207, 488, 652
DpnII GATC 7 cut(s) 14, 67, 174, 181, 205, 486, 650
EaeI YGGCCR 2 cut(s) 3, 133
Eam1104I CTCTTC 2 cut(s) 216, 534
EarI CTCTTC 2 cut(s) 216, 534
Eco130I CCWWGG 3 cut(s) 6, 156, 642
Eco31I GGTCTC 1 cut(s) 622
Eco57I CTGAAG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 3 cut(s) 6, 156, 642
ErhI CCWWGG 3 cut(s) 6, 156, 642
FaeI CATG 4 cut(s) 267, 487, 646, 735
FaiI YATR 5 cut(s) 265, 426, 485, 644, 733
FaqI GGGAC 1 cut(s) 177
FatI CATG 4 cut(s) 263, 483, 642, 731
FauI CCCGC 1 cut(s) 179
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 2 cut(s) 407, 663
FokI GGATG 3 cut(s) 90, 128, 152
Fsp4HI GCNGC 2 cut(s) 407, 663
FspBI CTAG 3 cut(s) 32, 90, 200
GluI GCNGC 2 cut(s) 407, 663
HaeIII GGCC 4 cut(s) 5, 135, 362, 482
HapII CCGG 1 cut(s) 169
Hin1II CATG 4 cut(s) 267, 487, 646, 735
HindIII AAGCTT 2 cut(s) 522, 710
HinfI GANTC 3 cut(s) 165, 260, 575
HpaII CCGG 1 cut(s) 169
HphI GGTGA 3 cut(s) 295, 445, 586
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 8 cut(s) 274, 302, 316, 367, 390, 457, 622, 694
Hpy188III TCNNGA 3 cut(s) 169, 344, 572
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 3 cut(s) 274, 349, 641
HpyCH4III ACNGT 2 cut(s) 111, 690
HpyCH4V TGCA 5 cut(s) 47, 149, 217, 306, 731
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 7 cut(s) 120, 238, 271, 364, 387, 619, 713
Hsp92II CATG 4 cut(s) 267, 487, 646, 735
Kpn2I TCCGGA 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 7 cut(s) 14, 67, 174, 181, 205, 486, 650
LpnPI CCDG 5 cut(s) 122, 149, 182, 535, 682
Lsp1109I GCAGC 1 cut(s) 674
LweI GCATC 4 cut(s) 34, 102, 106, 293
MaeI CTAG 3 cut(s) 32, 90, 200
MaeIII GTNAC 1 cut(s) 592
MalI GATC 7 cut(s) 16, 69, 176, 183, 207, 488, 652
MboI GATC 7 cut(s) 14, 67, 174, 181, 205, 486, 650
MboII GAAGA 7 cut(s) 12, 184, 233, 403, 448, 551, 630
MflI RGATCY 1 cut(s) 174
MlsI TGGCCA 2 cut(s) 5, 135
MluCI AATT 2 cut(s) 275, 444
MluNI TGGCCA 2 cut(s) 5, 135
MlyI GAGTC 2 cut(s) 159, 269
MmeI TCCRAC 4 cut(s) 93, 477, 498, 672
Mox20I TGGCCA 2 cut(s) 5, 135
MroI TCCGGA 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 2 cut(s) 5, 135
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 301
Msp20I TGGCCA 2 cut(s) 5, 135
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 530
NcoI CCATGG 1 cut(s) 642
NdeII GATC 7 cut(s) 14, 67, 174, 181, 205, 486, 650
NlaIII CATG 4 cut(s) 267, 487, 646, 735
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 592
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 575
PkrI GCNGC 2 cut(s) 408, 664
PleI GAGTC 2 cut(s) 159, 268
PpsI GAGTC 2 cut(s) 159, 268
PshAI GACNNNNGTC 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PsuI RGATCY 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 301
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 2 cut(s) 407, 663
Sau3AI GATC 7 cut(s) 14, 67, 174, 181, 205, 486, 650
SchI GAGTC 2 cut(s) 159, 269
ScrFI CCNGG 1 cut(s) 137
SfaNI GCATC 4 cut(s) 34, 102, 106, 293
SmiMI CAYNNNNRTG 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 342
SmoI CTYRAG 1 cut(s) 342
Sse9I AATT 2 cut(s) 275, 444
SsiI CCGC 2 cut(s) 186, 406
SspI AATATT 1 cut(s) 310
SspMI CTAG 3 cut(s) 32, 90, 200
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 3 cut(s) 6, 156, 642
TaaI ACNGT 2 cut(s) 111, 690
TaqI TCGA 4 cut(s) 13, 573, 653, 682
TasI AATT 2 cut(s) 275, 444
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 2 cut(s) 103, 252
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 1 cut(s) 662
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 92, 322
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 2 cut(s) 103, 252
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 3 cut(s) 32, 90, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.