Rmu_sc0001257.1_g000019

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001257.1
OG0000538
Physical Location & Seq
Reverse (-)
52043 .. 54371
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001257.1_g000019.1.cds

Sequence Viewer

Length: 423 bp
atgggtgcagtggaggtgctgggcagtctctgggtagtagggcagttgcaggaggctgttggtgctcgtgcaacggtggtagcaagactagcatgggctaggagcgttggtggaaaggttgagatttttccgggccaggatgagtttgcattcgccaaggaaggacttcagcagatctttgatcaggggttagaagctttaggtgatgaccaactgcaaagagagtttctcacttattcagccatacttccaccaactgattcctgcccatcggaattgaaggctgccctttcatcattcagaggtaatctcccagaggaaacctctgctattattcaagctagaaatgagttgaaggtggcctcagacctagtgacgcgggaagcgtgtaacctaggtttaccagcaataaacctaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

140

Amino Acids

15.0

Weight (kDa)

4.64

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 379
AciI CCGC 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 152
AgsI TTSAA 3 cut(s) 280, 338, 355
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 2 cut(s) 197, 341
AluI AGCT 2 cut(s) 197, 341
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 30
AoxI GGCC 2 cut(s) 133, 360
ApeKI GCWGC 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 165
AspA2I CCTAGG 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 215
AvrII CCTAGG 1 cut(s) 394
BauI CACGAG 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 137
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 5 cut(s) 89, 99, 342, 371, 395
BglII AGATCT 1 cut(s) 174
BisI GCNGC 1 cut(s) 285
BlnI CCTAGG 1 cut(s) 394
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 132, 137
BmgT120I GGNCC 1 cut(s) 133
BmrFI CCNGG 2 cut(s) 132, 137
BplI GAGNNNNNCTC 6 cut(s) 213, 245, 294, 326, 308, 340
BpuMI CCSGG 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 156, 394
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 156, 394
BseGI GGATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 271
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 2 cut(s) 135, 362
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 2 cut(s) 135, 362
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 174, 181
BspACI CCGC 1 cut(s) 379
BspANI GGCC 2 cut(s) 135, 362
BspCNI CTCAG 1 cut(s) 377
BspFNI CGCG 1 cut(s) 379
BssECI CCNNGG 2 cut(s) 156, 394
BssMI GATC 2 cut(s) 174, 181
BssSI CACGAG 1 cut(s) 66
BssT1I CCWWGG 2 cut(s) 156, 394
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 364
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 379
BstKTI GATC 2 cut(s) 177, 184
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 174, 181
BstMWI GCNNNNNNNGC 2 cut(s) 62, 89
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 130, 135
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 2 cut(s) 135, 362
BtsCI GGATG 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 133
CseI GACGC 1 cut(s) 385
CviAII CATG 1 cut(s) 93
CviJI RGCY 8 cut(s) 56, 98, 135, 197, 242, 284, 341, 362
CviKI_1 RGCY 8 cut(s) 56, 98, 135, 197, 242, 284, 341, 362
DdeI CTNAG 1 cut(s) 364
DpnI GATC 2 cut(s) 176, 183
DpnII GATC 2 cut(s) 174, 181
Eco130I CCWWGG 2 cut(s) 156, 394
Eco57I CTGAAG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 156, 394
ErhI CCWWGG 2 cut(s) 156, 394
FaeI CATG 1 cut(s) 96
FaiI YATR 2 cut(s) 94, 245
FatI CATG 1 cut(s) 92
FauI CCCGC 1 cut(s) 372
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 5 cut(s) 89, 99, 342, 371, 395
GluI GCNGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 2 cut(s) 135, 362
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 385
Hin1II CATG 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 1 cut(s) 260
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 3 cut(s) 274, 302, 367
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 155, 274, 349
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 5 cut(s) 8, 49, 71, 149, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 89
HpyF3I CTNAG 1 cut(s) 364
Hsp92II CATG 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 174, 181
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 1 cut(s) 271
MaeI CTAG 5 cut(s) 89, 99, 342, 371, 395
MaeIII GTNAC 2 cut(s) 373, 389
MalI GATC 2 cut(s) 176, 183
MboI GATC 2 cut(s) 174, 181
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 1 cut(s) 275
MnlI CCTC 6 cut(s) 7, 46, 296, 310, 334, 373
MroXI GAANNNNTTC 1 cut(s) 165
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 132, 137
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 2 cut(s) 62, 89
NciI CCSGG 1 cut(s) 132
NdeII GATC 2 cut(s) 174, 181
NlaIII CATG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 135
PspPI GGNCC 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 174
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 174, 181
Sau96I GGNCC 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 132, 137
SduI GDGCHC 1 cut(s) 67
Sse9I AATT 1 cut(s) 275
SsiI CCGC 1 cut(s) 379
SspMI CTAG 5 cut(s) 89, 99, 342, 371, 395
StyD4I CCNGG 2 cut(s) 130, 135
StyI CCWWGG 2 cut(s) 156, 394
TaaI ACNGT 1 cut(s) 76
TasI AATT 1 cut(s) 275
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 15
XmaJI CCTAGG 1 cut(s) 394
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 5 cut(s) 89, 99, 342, 371, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.