Rmu_sc0001257.1_g000004

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001257.1
OG0000538
Physical Location & Seq
Reverse (-)
11594 .. 11932
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001257.1_g000004.1.cds

Sequence Viewer

Length: 339 bp
ctgcaaagtgattttctcacttattcagccatacttctatcagctgattcctgcccatcggagttgaaggctgacctttcatcattcagacataatctcccagaggaaacctctgcttttattcaagctagaaatgagttgaaggtggcctcagacttagcagcttcaattactctgaagaagtttgtgcttcagcaagattcttccaagtatatcgatgcaaagaaagaaattcttgcctcagaggagaaaattgctaagcttaaggcaactctaataacagaagagagcaagaaggcgaagtttgatgaggtttggtttcgattgagactcaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

112

Amino Acids

12.65

Weight (kDa)

8.0

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 231
AcuI CTGAAG 2 cut(s) 176, 197
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 4 cut(s) 67, 125, 142, 168
AluBI AGCT 4 cut(s) 44, 128, 164, 262
AluI AGCT 4 cut(s) 44, 128, 164, 262
Alw26I GTCTC 1 cut(s) 322
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 231
BbvI GCAGC 1 cut(s) 173
BccI CCATC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 129
BfrI CTTAAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 162
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 163
BmsI GCATC 1 cut(s) 208
BplI GAGNNNNNCTC 2 cut(s) 95, 127
Bpu1102I GCTNAGC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
BseCI ATCGAT 1 cut(s) 216
BseMII CTCAG 2 cut(s) 165, 255
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 173
BshFI GGCC 1 cut(s) 149
BshVI ATCGAT 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 1 cut(s) 149
Bsp1720I GCTNAGC 1 cut(s) 258
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 2 cut(s) 164, 254
BspDI ATCGAT 1 cut(s) 216
BspTI CTTAAG 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 279
BstAFI CTTAAG 1 cut(s) 263
BstDEI CTNAG 4 cut(s) 151, 157, 241, 258
BstMAI GTCTC 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 173
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 1 cut(s) 149
BsuTUI ATCGAT 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 216
CviJI RGCY 7 cut(s) 29, 44, 71, 128, 149, 164, 262
CviKI_1 RGCY 7 cut(s) 29, 44, 71, 128, 149, 164, 262
DdeI CTNAG 4 cut(s) 151, 157, 241, 258
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco57I CTGAAG 2 cut(s) 176, 197
FaiI YATR 3 cut(s) 32, 93, 213
FalI AAGNNNNNCTT 2 cut(s) 219, 251
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 129
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 3 cut(s) 47, 200, 330
Hpy188I TCNGA 5 cut(s) 61, 89, 154, 177, 244
HpyAV CCTTC 3 cut(s) 61, 136, 289
HpyCH4V TGCA 2 cut(s) 4, 221
HpyF3I CTNAG 4 cut(s) 151, 157, 241, 258
LpnPI CCDG 2 cut(s) 64, 114
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 129
MboII GAAGA 3 cut(s) 190, 195, 296
MluCI AATT 3 cut(s) 168, 231, 252
MlyI GAGTC 1 cut(s) 324
MnlI CCTC 6 cut(s) 97, 121, 160, 238, 250, 304
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 44
MspCI CTTAAG 1 cut(s) 263
PfeI GAWTC 2 cut(s) 47, 200
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 162
SchI GAGTC 1 cut(s) 324
SetI ASST 8 cut(s) 46, 78, 113, 130, 147, 166, 264, 315
SfaNI GCATC 1 cut(s) 208
SgeI CNNG 8 cut(s) 63, 113, 137, 141, 209, 220, 248, 304
SmlI CTYRAG 2 cut(s) 263, 332
SmoI CTYRAG 2 cut(s) 263, 332
Sse9I AATT 3 cut(s) 168, 231, 252
SspMI CTAG 1 cut(s) 129
TaqI TCGA 2 cut(s) 216, 322
TasI AATT 3 cut(s) 168, 231, 252
TfiI GAWTC 2 cut(s) 47, 200
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 69
Vha464I CTTAAG 1 cut(s) 263
XapI RAATTY 1 cut(s) 231
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.