Rmu_sc0002560.1_g000020

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002560.1
OG0000538
Physical Location & Seq
Reverse (-)
96843 .. 99420
2578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002560.1_g000020.1.cds

Sequence Viewer

Length: 1203 bp
atgaacagtaaatcgtcctcgctaggttttccaaagatgaacataagtcgtcctcgctttattaatagagaagagataaggcgctggtgcttggaaacacatactttgcaaccagtcgactcaggcagaccttccacaatggtcaactttcaaacatggtgcgatcacctggcttggctgtcctctgatatcactgacattccctaccctaatactccctgcaggagatgcgggcacccaaatgaaaactggttttgtttatgctgtaagactgtcctttgtggtcgttatgacaacatgcacatgattcaacattacgaggagataaatcattctcttgtaatcagctgcagaaatctattagtttggtgttcctcctgccattcttttatagatcataaagtgattccacaactgaaggctgcactgttattgtcaaatgcctccaaggatcgttcgtcatcaaccaagctagagaacctcgatggtctaattgctgatgtagataatctcatctctacattttctggctttgatcttcatcaactggatactcacttctgtgatgaacttgcaatggccaaggagggactccaaaagatatttgactgtgacttggaagctttagctgatcccaaagtccaagaggagttccttactcattcagccacacttatttctgatgattcttgcccaatagacttgaaggttaaacttttatctttccaatctaatctctcagaggaaatgtctgctttcgtggaagctcaacatgagttgaataaagtgtcagacctatcagcttcacttgctgggcaaaagtttgtgcttgaatcgaccacttcaaagtatgccgaagtgaaagcactatttcttgcagcagacaagaaacatgccaaacttactgccaagatcagtgctgcgtcgaaggctggaattgaattgtttgaagatttagccattgttcggatgcgaagggctgagtttgaagagaaattgggtaccattgagggagtaattaccactgctagagatagatttgtctcagactcttcgaagctttctgcaataaagggattgaccaatgcagctgcccttttagtcactcgacgaaagtcagcctggaatagcttaaggattacttactcaaattttgcatcacttggtctgcatgatgaggaaacttatttggtgggtttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

400

Amino Acids

44.88

Weight (kDa)

6.07

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1001
AccB1I GGYRCC 2 cut(s) 234, 1001
AccI GTMKAC 1 cut(s) 117
AciI CCGC 1 cut(s) 231
AclWI GGATC 2 cut(s) 459, 626
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 1 cut(s) 1150
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 1 cut(s) 1003
AfiI CCNNNNNNNGG 1 cut(s) 966
AflII CTTAAG 1 cut(s) 1132
AgsI TTSAA 9 cut(s) 152, 311, 706, 781, 833, 846, 941, 950, 989
AjnI CCWGG 2 cut(s) 168, 1121
AleI CACNNNNGTG 1 cut(s) 561
AluBI AGCT 9 cut(s) 348, 472, 623, 629, 767, 803, 1060, 1091, 1131
AluI AGCT 9 cut(s) 348, 472, 623, 629, 767, 803, 1060, 1091, 1131
Alw26I GTCTC 1 cut(s) 1048
AlwI GGATC 2 cut(s) 459, 626
AoxI GGCC 1 cut(s) 579
ApeKI GCWGC 6 cut(s) 348, 422, 878, 920, 1088, 1091
ApoI RAATTY 1 cut(s) 1150
AseI ATTAAT 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 1001
AspLEI GCGC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 1055
BaeGI GKGCMC 1 cut(s) 237
BalI TGGCCA 1 cut(s) 581
BanI GGYRCC 2 cut(s) 234, 1001
BbvI GCAGC 6 cut(s) 335, 409, 890, 907, 1078, 1100
BccI CCATC 1 cut(s) 479
BciT130I CCWGG 2 cut(s) 170, 1123
BciVI GTATCC 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 1048
BfaI CTAG 4 cut(s) 23, 473, 1029, 1201
BfmI CTRYAG 2 cut(s) 220, 349
BfoI RGCGCY 1 cut(s) 85
BfrI CTTAAG 1 cut(s) 1132
BfuI GTATCC 1 cut(s) 544
BisI GCNGC 6 cut(s) 349, 423, 879, 921, 1089, 1092
BlsI GCNGC 6 cut(s) 350, 424, 880, 922, 1090, 1093
Bme1390I CCNGG 2 cut(s) 170, 1123
BmiI GGNNCC 2 cut(s) 236, 1003
BmrFI CCNGG 2 cut(s) 170, 1123
BmsI GCATC 3 cut(s) 218, 960, 1166
BoxI GACNNNNGTC 1 cut(s) 1114
Bpu14I TTCGAA 1 cut(s) 1055
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 2 cut(s) 447, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 966
Bse1I ACTGG 3 cut(s) 113, 254, 552
Bse3DI GCAATG 1 cut(s) 582
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 2 cut(s) 170, 1123
BseDI CCNNGG 2 cut(s) 447, 582
BseGI GGATG 1 cut(s) 975
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 1 cut(s) 966
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 4 cut(s) 135, 753, 972, 1059
BseNI ACTGG 3 cut(s) 113, 254, 552
BseRI GAGGAG 2 cut(s) 335, 662
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 6 cut(s) 335, 409, 890, 907, 1078, 1100
BseYI CCCAGC 1 cut(s) 812
BsgI GTGCAG 1 cut(s) 408
BshFI GGCC 1 cut(s) 581
BshNI GGYRCC 2 cut(s) 234, 1001
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 1 cut(s) 966
BsmAI GTCTC 1 cut(s) 1048
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 1 cut(s) 581
Bsp119I TTCGAA 1 cut(s) 1055
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 6 cut(s) 163, 394, 451, 535, 631, 912
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 581
BspCNI CTCAG 4 cut(s) 134, 752, 973, 1058
BspLI GGNNCC 2 cut(s) 236, 1003
BspMAI CTGCAG 2 cut(s) 224, 353
BspPI GGATC 2 cut(s) 459, 626
BspT104I TTCGAA 1 cut(s) 1055
BspT107I GGYRCC 2 cut(s) 234, 1001
BspTI CTTAAG 1 cut(s) 1132
BsrDI GCAATG 1 cut(s) 582
BsrI ACTGG 3 cut(s) 113, 254, 552
BssECI CCNNGG 2 cut(s) 447, 582
BssMI GATC 6 cut(s) 163, 394, 451, 535, 631, 912
BssT1I CCWWGG 2 cut(s) 447, 582
Bst2UI CCWGG 2 cut(s) 170, 1123
Bst4CI ACNGT 4 cut(s) 8, 274, 429, 611
Bst6I CTCTTC 3 cut(s) 66, 984, 1057
BstAFI CTTAAG 1 cut(s) 1132
BstAPI GCANNNNNTGC 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 1055
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 4 cut(s) 121, 739, 981, 1045
BstF5I GGATG 1 cut(s) 975
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 6 cut(s) 166, 397, 454, 538, 634, 915
BstMAI GTCTC 1 cut(s) 1048
BstMBI GATC 6 cut(s) 163, 394, 451, 535, 631, 912
BstMWI GCNNNNNNNGC 3 cut(s) 228, 809, 929
BstNI CCWGG 2 cut(s) 170, 1123
BstNSI RCATGY 2 cut(s) 301, 896
BstPAI GACNNNNGTC 1 cut(s) 1114
BstSCI CCNGG 2 cut(s) 168, 1121
BstSFI CTRYAG 2 cut(s) 220, 349
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 6 cut(s) 335, 409, 890, 907, 1078, 1100
BsuI GTATCC 1 cut(s) 544
BsuRI GGCC 1 cut(s) 581
BtsCI GGATG 1 cut(s) 975
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 4 cut(s) 192, 425, 922, 1023
Cac8I GCNNGC 1 cut(s) 233
CfoI GCGC 1 cut(s) 84
CseI GACGC 1 cut(s) 912
Csp6I GTAC 1 cut(s) 1002
CviAII CATG 6 cut(s) 156, 298, 304, 773, 893, 1172
CviQI GTAC 1 cut(s) 1002
DdeI CTNAG 4 cut(s) 121, 739, 981, 1045
DpnI GATC 6 cut(s) 165, 396, 453, 537, 633, 914
DpnII GATC 6 cut(s) 163, 394, 451, 535, 631, 912
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 3 cut(s) 66, 984, 1057
EarI CTCTTC 3 cut(s) 66, 984, 1057
Eco130I CCWWGG 2 cut(s) 447, 582
Eco32I GATATC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 168, 1121
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 2 cut(s) 447, 582
ErhI CCWWGG 2 cut(s) 447, 582
FaeI CATG 6 cut(s) 159, 301, 307, 776, 896, 1175
FalI AAGNNNNNCTT 2 cut(s) 1126, 1158
FaqI GGGAC 1 cut(s) 603
FatI CATG 6 cut(s) 155, 297, 303, 772, 892, 1171
FauI CCCGC 1 cut(s) 224
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 6 cut(s) 349, 423, 879, 921, 1089, 1092
FokI GGATG 1 cut(s) 982
Fsp4HI GCNGC 6 cut(s) 349, 423, 879, 921, 1089, 1092
FspBI CTAG 4 cut(s) 23, 473, 1029, 1201
GlaI GCGC 1 cut(s) 83
GluI GCNGC 6 cut(s) 349, 423, 879, 921, 1089, 1092
GsaI CCCAGC 1 cut(s) 816
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 1 cut(s) 581
HgaI GACGC 1 cut(s) 912
HhaI GCGC 1 cut(s) 84
Hin1II CATG 6 cut(s) 159, 301, 307, 776, 896, 1175
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HincII GTYRAC 2 cut(s) 118, 145
HindII GTYRAC 2 cut(s) 118, 145
HindIII AAGCTT 2 cut(s) 621, 1058
HinfI GANTC 7 cut(s) 119, 307, 406, 591, 686, 833, 1049
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 118, 145
Hpy188I TCNGA 6 cut(s) 187, 682, 742, 793, 969, 1048
Hpy8I GTNNAC 2 cut(s) 118, 145
Hpy99I CGWCG 2 cut(s) 928, 1113
HpyAV CCTTC 5 cut(s) 141, 412, 700, 922, 969
HpyCH4III ACNGT 4 cut(s) 8, 274, 429, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 809, 929
HpyF3I CTNAG 4 cut(s) 121, 739, 981, 1045
Hsp92II CATG 6 cut(s) 159, 301, 307, 776, 896, 1175
HspAI GCGC 1 cut(s) 82
KpnI GGTACC 1 cut(s) 1005
Kzo9I GATC 6 cut(s) 163, 394, 451, 535, 631, 912
Lsp1109I GCAGC 6 cut(s) 335, 409, 890, 907, 1078, 1100
LweI GCATC 3 cut(s) 218, 960, 1166
MaeI CTAG 4 cut(s) 23, 473, 1029, 1201
MaeIII GTNAC 2 cut(s) 611, 1102
MalI GATC 6 cut(s) 165, 396, 453, 537, 633, 914
MboI GATC 6 cut(s) 163, 394, 451, 535, 631, 912
MboII GAAGA 5 cut(s) 83, 530, 962, 1001, 1044
MhlI GDGCHC 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 6 cut(s) 492, 936, 941, 995, 1017, 1150
MluNI TGGCCA 1 cut(s) 581
MlyI GAGTC 3 cut(s) 113, 585, 1043
Mox20I TGGCCA 1 cut(s) 581
MscI TGGCCA 1 cut(s) 581
MseI TTAA 3 cut(s) 63, 711, 1133
MslI CAYNNNNRTG 3 cut(s) 240, 302, 561
Msp20I TGGCCA 1 cut(s) 581
MspA1I CMGCKG 2 cut(s) 348, 1091
MspCI CTTAAG 1 cut(s) 1132
MspR9I CCNGG 2 cut(s) 170, 1123
MvaI CCWGG 2 cut(s) 170, 1123
MwoI GCNNNNNNNGC 3 cut(s) 228, 809, 929
NdeII GATC 6 cut(s) 163, 394, 451, 535, 631, 912
NlaIII CATG 6 cut(s) 159, 301, 307, 776, 896, 1175
NlaIV GGNNCC 2 cut(s) 236, 1003
NmuCI GTSAC 2 cut(s) 611, 1102
NspI RCATGY 2 cut(s) 301, 896
NspV TTCGAA 1 cut(s) 1055
OliI CACNNNNGTG 1 cut(s) 561
PfeI GAWTC 4 cut(s) 307, 406, 686, 833
PkrI GCNGC 6 cut(s) 350, 424, 880, 922, 1090, 1093
PleI GAGTC 3 cut(s) 113, 585, 1043
PpsI GAGTC 3 cut(s) 113, 585, 1043
PshAI GACNNNNGTC 1 cut(s) 1114
PshBI ATTAAT 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 168, 1121
PspFI CCCAGC 1 cut(s) 812
PspGI CCWGG 2 cut(s) 168, 1121
PspN4I GGNNCC 2 cut(s) 236, 1003
PstI CTGCAG 2 cut(s) 224, 353
PvuII CAGCTG 2 cut(s) 348, 1091
RsaI GTAC 1 cut(s) 1003
RsaNI GTAC 1 cut(s) 1002
RseI CAYNNNNRTG 3 cut(s) 240, 302, 561
SalI GTCGAC 1 cut(s) 116
SaqAI TTAA 3 cut(s) 63, 711, 1133
SatI GCNGC 6 cut(s) 349, 423, 879, 921, 1089, 1092
Sau3AI GATC 6 cut(s) 163, 394, 451, 535, 631, 912
SbfI CCTGCAGG 1 cut(s) 224
SchI GAGTC 3 cut(s) 113, 585, 1043
ScrFI CCNGG 2 cut(s) 170, 1123
SdaI CCTGCAGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 3 cut(s) 218, 960, 1166
SfcI CTRYAG 2 cut(s) 220, 349
SfuI TTCGAA 1 cut(s) 1055
SmiMI CAYNNNNRTG 3 cut(s) 240, 302, 561
SmlI CTYRAG 1 cut(s) 1132
SmoI CTYRAG 1 cut(s) 1132
Sse8387I CCTGCAGG 1 cut(s) 224
Sse9I AATT 6 cut(s) 492, 936, 941, 995, 1017, 1150
SsiI CCGC 1 cut(s) 231
SspMI CTAG 4 cut(s) 23, 473, 1029, 1201
StyD4I CCNGG 2 cut(s) 168, 1121
StyI CCWWGG 2 cut(s) 447, 582
TaaI ACNGT 4 cut(s) 8, 274, 429, 611
TaqI TCGA 6 cut(s) 117, 483, 836, 926, 1055, 1108
TasI AATT 6 cut(s) 492, 936, 941, 995, 1017, 1150
TfiI GAWTC 4 cut(s) 307, 406, 686, 833
Tru1I TTAA 3 cut(s) 63, 711, 1133
Tru9I TTAA 3 cut(s) 63, 711, 1133
TscAI CASTG 4 cut(s) 199, 432, 922, 1030
TseFI GTSAC 2 cut(s) 611, 1102
TseI GCWGC 6 cut(s) 348, 422, 878, 920, 1088, 1091
Tsp45I GTSAC 2 cut(s) 611, 1102
TspDTI ATGAA 5 cut(s) 17, 53, 258, 530, 582
TspRI CASTG 4 cut(s) 199, 432, 922, 1030
Vha464I CTTAAG 1 cut(s) 1132
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 1 cut(s) 1150
XceI RCATGY 2 cut(s) 301, 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 4 cut(s) 23, 473, 1029, 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.