Rroxscaffold_7G00212050

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000538
Physical Location & Seq
Forward (+)
62494336 .. 62501007
6672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212050.1

Sequence Viewer

Length: 2121 bp
ATGGCAGCGGTTGCGGTGGCGTCCGGGATCGATGCAAAAGAATGGGAGCCCGGATCGGGTGGCAGCCCAACTCGATCCAATTGGCTAGAGAGCATTGATGCAATGATTGTTGATGTTATTGATCTCTTGTCTAAGCCATTTCCTAGCATCAATGTTCATCCACAGTTGAATGCTCAGTCATTTGTAGGCCAGGATGAGCTTGCATTGGCTAAGGAGGGACTGCAAAAGATCTTTGATAAGGGGTTAATAGCTGTAGCTGATCCCAAAGTGCAAGAAGAGTTTCTCCTTTACTCAGCCACACTGCTATCAGCTGAGTCATGCCCCTCAGAATTGAAGGTTAACCTCTCATCATGTAATCTTTCGGAGGAAACCTCTGCTTTCATCAAGGCTCAAGATGAGTTGAAGTTGGCCTTAGGCTTATCAGCCTCAATCACTCAGAAGAAGTTCATGGTGTGGCAACAAAATTCAAAGTGTGATGAGGTGAAGAAAGAAATTCTCACCTCGGACGAGAAAGTTGCCAACTTCAAGGCCATGATCAAAGAGTTGGACGCACAAATAAAAAGGTTGGAAGCTTGTTTAGCCACAGAAGAGAGCAACATAGCAAAGATTGATGAAGCTATCGATTCCATCGAGAAACAAGTCACCACCGCGAGAGATGGATTGGTCTCGGACTTGGCACATGTGTCTTCCATGGAAGGATCGACCCAAGCAGCTAACGAGTTAGTAGCTCGAAAACAGTCAGACTGGGATAACCTGACGTCCTCTGTGGTCCTGGTGTTAAGGGACATATTGGTGAGCATTATGATGAGACAAAGCACTGTCTTTGTGTCAACTGCAGGTAACCATTACAATAGTCGATCATCTTCAGCCAAGCTCGAGAGCATTGATGCAGTGGTTGTTGATGTTACTGATCTCTTGTCCAAGCCATTTCCTACCATCAATGTTCATCCACAGTTGGATGCTCGGTTGTTTGTTGGCCAGGATGAGCTTGCCTTGTCTAAGGAGGGACTTCGGAATGTCTTTGATCGCGGGTTAAAAGCTCTAGCTGATCCCAAGGTGCAAGAAGAGTTTCTCCTTTACGCAGCCATGCTGCTATCAGCCGAGTCATGCCCATCAGAATTGAAGGTTAACCTTTCATCATTCAGATGTAATCTTTCGGAAGAAACCTCTGCTTTCATTAGAGCTCAAGATGAGCTGAAGGTGGCCTCAGAGTTATCTGCCTCGATTACCCAGAAGTTGATTGTGGTGAGGCAACAAACTTCGAAGTATGATGAGGTAAAGAAAGAAATGATTGCCTCGGACGAGAAAGTTGCCAACTATAAGTCCACGATCAAAGAGTTGGAGGCACAAATCAAAGGGTTGGAAGCTTGTTTAGCCACGGAAGTGAGCAACAGGAAAAAGATTGATGGGGTTATCGATTCAATCGAGACACAAGTCACCACAGCGAGAGATGGACTGGTCTCGGACTTGGCACGAGTGTCTTCCATGGAGGGAACGAGCCAAGCAGCTTACCAGTTAGTAACTCAAAAACAGTCGCACTGGGATAACCTAAAGATTATGTTTACTAGGTTTGCAATTGCAAACGCCACCATGAGTCGACATCCCAGTGTGAAGTGGGCTCAGCAGCCTGATACGCTTTACATCACTATTGAGTTGCCCGATGCCCAGGATGTAAAGCTTAAACTGGAGCCTGAAGGTAAGTTTCTATTCTCTGCTACCACTGGAGCAGAAAAGACACCCTACATAGTTGATCTTGATCTCTATGACAAGATTGATGTAAATGAGACTAGGTATTGTGTTGGCCCAAGAAATATCTGTCACCTAGTGAAAAAAGCTGAAAATAAATGGTGGAGCAGATTGATAAAACAAGAAGGAAAAGCTCCTGGGTTCTTGAAAGTTGATTGGGATAATTGGGGAGATGAGCAAGTTGGAAGCCTGTTTAGCCATGGAAGAGAGCAACAGGGCAAACTTCCAAAGTATGATGAGGTGAAGAAAGAAATGGTCGCCTTGGACGAGAAAGTTGCCGACGTCAAGGCCATGCATGATCAAAGAGTTGGAAGCACAAATAAAAAGGTTGGAAGCTTGTTTAGCTACGGAAGAGAGCAACAGGGCAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

706

Amino Acids

78.13

Weight (kDa)

5.22

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 535 - 611 1.5e-09 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 761, 2031
Acc36I ACCTGC 1 cut(s) 827
AccI GTMKAC 1 cut(s) 1597
AccII CGCG 2 cut(s) 650, 1029
AciI CCGC 4 cut(s) 8, 14, 648, 1029
AclWI GGATC 6 cut(s) 35, 61, 69, 254, 706, 1043
AcoI YGGCCR 1 cut(s) 976
AcsI RAATTY 2 cut(s) 463, 492
AcuI CTGAAG 3 cut(s) 849, 1217, 1713
AcyI GRCGYC 3 cut(s) 20, 758, 2028
AdeI CACNNNGTG 1 cut(s) 1825
AfiI CCNNNNNNNGG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 679
AgsI TTSAA 8 cut(s) 169, 334, 403, 468, 526, 1123, 1422, 1894
AjnI CCWGG 5 cut(s) 189, 771, 978, 1665, 1882
AleI CACNNNNGTG 1 cut(s) 1382
Alw21I GWGCWC 1 cut(s) 1186
Alw26I GTCTC 5 cut(s) 670, 802, 1421, 1465, 1778
AlwI GGATC 6 cut(s) 35, 61, 69, 254, 706, 1043
Ama87I CYCGRG 1 cut(s) 875
AoxI GGCC 7 cut(s) 187, 408, 528, 976, 1203, 1801, 2034
ApeKI GCWGC 7 cut(s) 5, 63, 710, 1082, 1090, 1505, 1624
ApoI RAATTY 2 cut(s) 463, 492
Asp700I GAANNNNTTC 3 cut(s) 279, 443, 1068
AspS9I GGNCC 2 cut(s) 769, 1802
AsuC2I CCSGG 2 cut(s) 25, 51
AsuHPI GGTGA 8 cut(s) 490, 493, 634, 805, 1258, 1429, 1811, 1999
AsuII TTCGAA 1 cut(s) 1262
AvaI CYCGRG 1 cut(s) 875
AvaII GGWCC 1 cut(s) 769
AxyI CCTNAGG 1 cut(s) 412
BalI TGGCCA 1 cut(s) 978
BanII GRGCYC 3 cut(s) 51, 1186, 1621
BauI CACGAG 1 cut(s) 1473
BbsI GAAGAC 2 cut(s) 678, 1473
Bbv12I GWGCWC 1 cut(s) 1186
BbvI GCAGC 7 cut(s) 17, 75, 722, 1077, 1094, 1517, 1636
BccI CCATC 6 cut(s) 635, 650, 944, 1120, 1400, 1445
BcgI CGANNNNNNTGC 6 cut(s) 497, 531, 1292, 1326, 2003, 2037
BciT130I CCWGG 5 cut(s) 191, 773, 980, 1667, 1884
BclI TGATCA 2 cut(s) 534, 2044
BcnI CCSGG 2 cut(s) 25, 51
BcoDI GTCTC 5 cut(s) 670, 802, 1421, 1465, 1778
BfaI CTAG 6 cut(s) 86, 144, 1043, 1566, 1788, 1823
BfmI CTRYAG 2 cut(s) 252, 834
BfuAI ACCTGC 1 cut(s) 827
BglII AGATCT 1 cut(s) 228
BisI GCNGC 7 cut(s) 6, 64, 711, 1083, 1091, 1506, 1625
BlpI GCTNAGC 1 cut(s) 1620
BlsI GCNGC 7 cut(s) 7, 65, 712, 1084, 1092, 1507, 1626
Bme1390I CCNGG 7 cut(s) 25, 51, 191, 773, 980, 1667, 1884
Bme18I GGWCC 1 cut(s) 769
BmeT110I CYCGRG 1 cut(s) 875
BmgT120I GGNCC 2 cut(s) 769, 1802
BmiI GGNNCC 2 cut(s) 48, 1689
BmrFI CCNGG 7 cut(s) 25, 51, 191, 773, 980, 1667, 1884
BmrI ACTGGG 3 cut(s) 754, 1549, 1599
BmsI GCATC 6 cut(s) 22, 88, 156, 877, 949, 1651
BmuI ACTGGG 3 cut(s) 754, 1549, 1599
BoxI GACNNNNGTC 1 cut(s) 1433
BpiI GAAGAC 2 cut(s) 678, 1473
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 2 cut(s) 1706, 1743
Bpu10I CCTNAGC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 1620
Bpu14I TTCGAA 1 cut(s) 1262
BpuEI CTTGAG 2 cut(s) 375, 1170
BpuMI CCSGG 2 cut(s) 25, 51
Bsa29I ATCGAT 3 cut(s) 30, 621, 1416
BsaBI GATNNNNATC 1 cut(s) 1755
BsaHI GRCGYC 3 cut(s) 20, 758, 2028
BsaI GGTCTC 2 cut(s) 670, 1465
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 7 cut(s) 749, 1461, 1513, 1544, 1605, 1689, 1726
Bse21I CCTNAGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 1755
BseBI CCWGG 5 cut(s) 191, 773, 980, 1667, 1884
BseCI ATCGAT 3 cut(s) 30, 621, 1416
BseGI GGATG 7 cut(s) 157, 199, 946, 964, 988, 1600, 1675
BseJI GATNNNNATC 1 cut(s) 1755
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 7 cut(s) 188, 303, 306, 339, 449, 1221, 1634
BseNI ACTGG 7 cut(s) 749, 1461, 1513, 1544, 1605, 1689, 1726
BseXI GCAGC 7 cut(s) 17, 75, 722, 1077, 1094, 1517, 1636
Bsh1236I CGCG 2 cut(s) 650, 1029
BshFI GGCC 7 cut(s) 189, 410, 530, 978, 1205, 1803, 2036
BshVI ATCGAT 3 cut(s) 30, 621, 1416
BsiHKAI GWGCWC 1 cut(s) 1186
BsiHKCI CYCGRG 1 cut(s) 875
BsiSI CCGG 2 cut(s) 24, 51
BslFI GGGAC 3 cut(s) 231, 797, 1020
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 5 cut(s) 670, 802, 1421, 1465, 1778
BsmFI GGGAC 3 cut(s) 231, 797, 1020
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 7 cut(s) 189, 410, 530, 978, 1205, 1803, 2036
Bso31I GGTCTC 2 cut(s) 670, 1465
BsoBI CYCGRG 1 cut(s) 875
Bsp119I TTCGAA 1 cut(s) 1262
Bsp1286I GDGCHC 3 cut(s) 51, 1186, 1621
Bsp1720I GCTNAGC 1 cut(s) 1620
Bsp19I CCATGG 3 cut(s) 690, 1485, 1945
BspACI CCGC 4 cut(s) 8, 14, 648, 1029
BspANI GGCC 7 cut(s) 189, 410, 530, 978, 1205, 1803, 2036
BspCNI CTCAG 7 cut(s) 187, 304, 305, 338, 448, 1220, 1633
BspDI ATCGAT 3 cut(s) 30, 621, 1416
BspFNI CGCG 2 cut(s) 650, 1029
BspLI GGNNCC 2 cut(s) 48, 1689
BspMAI CTGCAG 1 cut(s) 838
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 6 cut(s) 35, 61, 69, 254, 706, 1043
BspT104I TTCGAA 1 cut(s) 1262
BspTNI GGTCTC 2 cut(s) 670, 1465
BsrDI GCAATG 1 cut(s) 108
BsrI ACTGG 7 cut(s) 749, 1461, 1513, 1544, 1605, 1689, 1726
BssNI GRCGYC 3 cut(s) 20, 758, 2028
BssSI CACGAG 1 cut(s) 1473
BssT1I CCWWGG 5 cut(s) 690, 1053, 1485, 1945, 2007
Bst2BI CACGAG 1 cut(s) 1473
Bst2UI CCWGG 5 cut(s) 191, 773, 980, 1667, 1884
Bst4CI ACNGT 5 cut(s) 165, 738, 820, 954, 1533
Bst6I CTCTTC 5 cut(s) 270, 582, 1059, 1945, 2092
BstACI GRCGYC 3 cut(s) 20, 758, 2028
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 1262
BstC8I GCNNGC 2 cut(s) 201, 990
BstDSI CCRYGG 4 cut(s) 690, 1377, 1485, 1945
BstEII GGTNACC 1 cut(s) 839
BstF5I GGATG 7 cut(s) 157, 199, 946, 964, 988, 1600, 1675
BstFNI CGCG 2 cut(s) 650, 1029
BstMAI GTCTC 5 cut(s) 670, 802, 1421, 1465, 1778
BstMWI GCNNNNNNNGC 6 cut(s) 11, 578, 1373, 1633, 1941, 2088
BstNI CCWGG 5 cut(s) 191, 773, 980, 1667, 1884
BstNSI RCATGY 1 cut(s) 683
BstPAI GACNNNNGTC 1 cut(s) 1433
BstPI GGTNACC 1 cut(s) 839
BstSCI CCNGG 7 cut(s) 23, 49, 189, 771, 978, 1665, 1882
BstSFI CTRYAG 2 cut(s) 252, 834
BstUI CGCG 2 cut(s) 650, 1029
BstV1I GCAGC 7 cut(s) 17, 75, 722, 1077, 1094, 1517, 1636
BstV2I GAAGAC 2 cut(s) 678, 1473
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
Bsu15I ATCGAT 3 cut(s) 30, 621, 1416
Bsu36I CCTNAGG 1 cut(s) 412
BsuRI GGCC 7 cut(s) 189, 410, 530, 978, 1205, 1803, 2036
BsuTUI ATCGAT 3 cut(s) 30, 621, 1416
BtgI CCRYGG 4 cut(s) 690, 1377, 1485, 1945
BtsCI GGATG 7 cut(s) 157, 199, 946, 964, 988, 1600, 1675
BtsI GCAGTG 2 cut(s) 299, 897
BtsIMutI CAGTG 6 cut(s) 299, 816, 897, 1537, 1612, 1719
BveI ACCTGC 1 cut(s) 827
Cac8I GCNNGC 2 cut(s) 201, 990
Cfr13I GGNCC 2 cut(s) 769, 1802
ClaI ATCGAT 3 cut(s) 30, 621, 1416
CseI GACGC 2 cut(s) 9, 557
DraIII CACNNNGTG 1 cut(s) 1825
EaeI YGGCCR 1 cut(s) 976
Eam1104I CTCTTC 5 cut(s) 270, 582, 1059, 1945, 2092
EarI CTCTTC 5 cut(s) 270, 582, 1059, 1945, 2092
Ecl136II GAGCTC 1 cut(s) 1184
Eco130I CCWWGG 5 cut(s) 690, 1053, 1485, 1945, 2007
Eco24I GRGCYC 3 cut(s) 51, 1186, 1621
Eco31I GGTCTC 2 cut(s) 670, 1465
Eco47I GGWCC 1 cut(s) 769
Eco53kI GAGCTC 1 cut(s) 1184
Eco57I CTGAAG 3 cut(s) 849, 1217, 1713
Eco81I CCTNAGG 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 875
Eco91I GGTNACC 1 cut(s) 839
EcoICRI GAGCTC 1 cut(s) 1184
EcoO65I GGTNACC 1 cut(s) 839
EcoRII CCWGG 5 cut(s) 189, 771, 978, 1665, 1882
EcoT14I CCWWGG 5 cut(s) 690, 1053, 1485, 1945, 2007
EcoT22I ATGCAT 1 cut(s) 2043
EcoT38I GRGCYC 3 cut(s) 51, 1186, 1621
ErhI CCWWGG 5 cut(s) 690, 1053, 1485, 1945, 2007
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 3 cut(s) 231, 797, 1020
FauI CCCGC 1 cut(s) 1022
FbaI TGATCA 2 cut(s) 534, 2044
FblI GTMKAC 1 cut(s) 1597
Fnu4HI GCNGC 7 cut(s) 6, 64, 711, 1083, 1091, 1506, 1625
FokI GGATG 7 cut(s) 144, 206, 933, 971, 995, 1587, 1682
FriOI GRGCYC 3 cut(s) 51, 1186, 1621
Fsp4HI GCNGC 7 cut(s) 6, 64, 711, 1083, 1091, 1506, 1625
FspBI CTAG 6 cut(s) 86, 144, 1043, 1566, 1788, 1823
GluI GCNGC 7 cut(s) 6, 64, 711, 1083, 1091, 1506, 1625
GsuI CTGGAG 2 cut(s) 1706, 1743
HaeIII GGCC 7 cut(s) 189, 410, 530, 978, 1205, 1803, 2036
HapII CCGG 2 cut(s) 24, 51
HgaI GACGC 2 cut(s) 9, 557
Hin1I GRCGYC 3 cut(s) 20, 758, 2028
HincII GTYRAC 4 cut(s) 340, 831, 1129, 1598
HindII GTYRAC 4 cut(s) 340, 831, 1129, 1598
HindIII AAGCTT 4 cut(s) 570, 1365, 1676, 2080
HinfI GANTC 5 cut(s) 314, 623, 1103, 1418, 1594
HpaI GTTAAC 2 cut(s) 340, 1129
HpaII CCGG 2 cut(s) 24, 51
HphI GGTGA 8 cut(s) 490, 493, 634, 805, 1258, 1429, 1811, 1999
Hpy166II GTNNAC 6 cut(s) 340, 831, 1129, 1326, 1563, 1598
Hpy188III TCNNGA 7 cut(s) 392, 631, 877, 1187, 1426, 1754, 1891
Hpy8I GTNNAC 6 cut(s) 340, 831, 1129, 1326, 1563, 1598
Hpy99I CGWCG 1 cut(s) 2030
HpyAV CCTTC 6 cut(s) 328, 689, 1117, 1192, 1688, 1865
HpyCH4III ACNGT 5 cut(s) 165, 738, 820, 954, 1533
HpyCH4IV ACGT 2 cut(s) 758, 2028
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 578, 1373, 1633, 1941, 2088
HpySE526I ACGT 2 cut(s) 758, 2028
Hsp92I GRCGYC 3 cut(s) 20, 758, 2028
Ksp22I TGATCA 2 cut(s) 534, 2044
KspAI GTTAAC 2 cut(s) 340, 1129
LmnI GCTCC 5 cut(s) 46, 1687, 1724, 1851, 1885
Lsp1109I GCAGC 7 cut(s) 17, 75, 722, 1077, 1094, 1517, 1636
LweI GCATC 6 cut(s) 22, 88, 156, 877, 949, 1651
MaeI CTAG 6 cut(s) 86, 144, 1043, 1566, 1788, 1823
MaeII ACGT 2 cut(s) 758, 2028
MaeIII GTNAC 6 cut(s) 640, 839, 904, 1435, 1519, 1817
MfeI CAATTG 2 cut(s) 79, 1575
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 3 cut(s) 51, 1186, 1621
MlsI TGGCCA 1 cut(s) 978
MluCI AATT 7 cut(s) 79, 329, 463, 492, 1118, 1575, 1909
MluNI TGGCCA 1 cut(s) 978
MlyI GAGTC 3 cut(s) 323, 1112, 1603
MmeI TCCRAC 8 cut(s) 525, 546, 936, 1320, 1341, 1909, 2035, 2056
Mox20I TGGCCA 1 cut(s) 978
Mph1103I ATGCAT 1 cut(s) 2043
MroXI GAANNNNTTC 3 cut(s) 279, 443, 1068
MscI TGGCCA 1 cut(s) 978
MseI TTAA 6 cut(s) 245, 339, 779, 1034, 1128, 1680
MslI CAYNNNNRTG 5 cut(s) 791, 803, 1144, 1382, 1605
Msp20I TGGCCA 1 cut(s) 978
MspA1I CMGCKG 2 cut(s) 8, 311
MspI CCGG 2 cut(s) 24, 51
MspR9I CCNGG 7 cut(s) 25, 51, 191, 773, 980, 1667, 1884
MunI CAATTG 2 cut(s) 79, 1575
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 5 cut(s) 191, 773, 980, 1667, 1884
MvnI CGCG 2 cut(s) 650, 1029
MwoI GCNNNNNNNGC 6 cut(s) 11, 578, 1373, 1633, 1941, 2088
NciI CCSGG 2 cut(s) 25, 51
NcoI CCATGG 3 cut(s) 690, 1485, 1945
NlaIV GGNNCC 2 cut(s) 48, 1689
NmeAIII GCCGAG 1 cut(s) 1126
NmuCI GTSAC 3 cut(s) 640, 1435, 1817
NsiI ATGCAT 1 cut(s) 2043
NspI RCATGY 1 cut(s) 683
NspV TTCGAA 1 cut(s) 1262
OliI CACNNNNGTG 1 cut(s) 1382
PaeR7I CTCGAG 1 cut(s) 875
PciI ACATGT 1 cut(s) 679
PcsI WCGNNNNNNNCGW 3 cut(s) 627, 1422, 2010
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 3 cut(s) 279, 443, 1068
PfeI GAWTC 2 cut(s) 623, 1418
PfoI TCCNGGA 1 cut(s) 23
PkrI GCNGC 7 cut(s) 7, 65, 712, 1084, 1092, 1507, 1626
PleI GAGTC 3 cut(s) 322, 1111, 1602
PpsI GAGTC 3 cut(s) 322, 1111, 1602
PscI ACATGT 1 cut(s) 679
PshAI GACNNNNGTC 1 cut(s) 1433
Psp124BI GAGCTC 1 cut(s) 1186
Psp6I CCWGG 5 cut(s) 189, 771, 978, 1665, 1882
PspEI GGTNACC 1 cut(s) 839
PspGI CCWGG 5 cut(s) 189, 771, 978, 1665, 1882
PspN4I GGNNCC 2 cut(s) 48, 1689
PspPI GGNCC 2 cut(s) 769, 1802
PstI CTGCAG 1 cut(s) 838
PsuI RGATCY 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 311
RseI CAYNNNNRTG 5 cut(s) 791, 803, 1144, 1382, 1605
SacI GAGCTC 1 cut(s) 1186
SalI GTCGAC 1 cut(s) 1596
SaqAI TTAA 6 cut(s) 245, 339, 779, 1034, 1128, 1680
SatI GCNGC 7 cut(s) 6, 64, 711, 1083, 1091, 1506, 1625
Sau96I GGNCC 2 cut(s) 769, 1802
SchI GAGTC 3 cut(s) 323, 1112, 1603
ScrFI CCNGG 7 cut(s) 25, 51, 191, 773, 980, 1667, 1884
SduI GDGCHC 3 cut(s) 51, 1186, 1621
SfaNI GCATC 6 cut(s) 22, 88, 156, 877, 949, 1651
SfcI CTRYAG 2 cut(s) 252, 834
Sfr274I CTCGAG 1 cut(s) 875
SfuI TTCGAA 1 cut(s) 1262
SinI GGWCC 1 cut(s) 769
SlaI CTCGAG 1 cut(s) 875
SmiMI CAYNNNNRTG 5 cut(s) 791, 803, 1144, 1382, 1605
SmlI CTYRAG 3 cut(s) 390, 875, 1185
SmoI CTYRAG 3 cut(s) 390, 875, 1185
Sse9I AATT 7 cut(s) 79, 329, 463, 492, 1118, 1575, 1909
SsiI CCGC 4 cut(s) 8, 14, 648, 1029
SspMI CTAG 6 cut(s) 86, 144, 1043, 1566, 1788, 1823
SstI GAGCTC 1 cut(s) 1186
StyD4I CCNGG 7 cut(s) 23, 49, 189, 771, 978, 1665, 1882
StyI CCWWGG 5 cut(s) 690, 1053, 1485, 1945, 2007
TaaI ACNGT 5 cut(s) 165, 738, 820, 954, 1533
TaiI ACGT 2 cut(s) 761, 2031
TasI AATT 7 cut(s) 79, 329, 463, 492, 1118, 1575, 1909
TfiI GAWTC 2 cut(s) 623, 1418
Tru1I TTAA 6 cut(s) 245, 339, 779, 1034, 1128, 1680
Tru9I TTAA 6 cut(s) 245, 339, 779, 1034, 1128, 1680
TscAI CASTG 6 cut(s) 306, 823, 897, 1544, 1612, 1726
TseFI GTSAC 3 cut(s) 640, 1435, 1817
TseI GCWGC 7 cut(s) 5, 63, 710, 1082, 1090, 1505, 1624
Tsp45I GTSAC 3 cut(s) 640, 1435, 1817
TspDTI ATGAA 7 cut(s) 146, 370, 436, 627, 935, 1125, 1165
TspGWI ACGGA 2 cut(s) 1394, 2109
TspRI CASTG 6 cut(s) 306, 823, 897, 1544, 1612, 1726
VpaK11BI GGWCC 1 cut(s) 769
XapI RAATTY 2 cut(s) 463, 492
XceI RCATGY 1 cut(s) 683
XhoI CTCGAG 1 cut(s) 875
XmiI GTMKAC 1 cut(s) 1597
XmnI GAANNNNTTC 3 cut(s) 279, 443, 1068
XspI CTAG 6 cut(s) 86, 144, 1043, 1566, 1788, 1823
ZraI GACGTC 2 cut(s) 759, 2029
Zsp2I ATGCAT 1 cut(s) 2043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.