histone deacetylase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1343 |
| AccI | GTMKAC | 4 cut(s) | 628, 827, 1107, 1676 |
| AciI | CCGC | 2 cut(s) | 138, 1364 |
| AclWI | GGATC | 2 cut(s) | 152, 1249 |
| AcoI | YGGCCR | 3 cut(s) | 85, 1384, 1404 |
| AcsI | RAATTY | 1 cut(s) | 1695 |
| AcuI | CTGAAG | 3 cut(s) | 744, 1403, 1661 |
| AcvI | CACGTG | 1 cut(s) | 1782 |
| AdeI | CACNNNGTG | 1 cut(s) | 859 |
| AfaI | GTAC | 1 cut(s) | 1653 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1343, 1382, 1413 |
| AjnI | CCWGG | 3 cut(s) | 87, 916, 1342 |
| AleI | CACNNNNGTG | 2 cut(s) | 413, 1146 |
| Alw21I | GWGCWC | 1 cut(s) | 1073 |
| Alw26I | GTCTC | 3 cut(s) | 26, 256, 496 |
| AlwI | GGATC | 2 cut(s) | 152, 1249 |
| AoxI | GGCC | 8 cut(s) | 85, 234, 1014, 1384, 1404, 1611, 1766, 1790 |
| ApeKI | GCWGC | 4 cut(s) | 536, 655, 1188, 1625 |
| ApoI | RAATTY | 1 cut(s) | 1695 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1416 |
| AspA2I | CCTAGG | 1 cut(s) | 1795 |
| AspS9I | GGNCC | 2 cut(s) | 1767, 1791 |
| AsuHPI | GGTGA | 4 cut(s) | 460, 845, 979, 1786 |
| AvrII | CCTAGG | 1 cut(s) | 1795 |
| BalI | TGGCCA | 2 cut(s) | 87, 1406 |
| BanII | GRGCYC | 1 cut(s) | 652 |
| BbrPI | CACGTG | 1 cut(s) | 1782 |
| BbsI | GAAGAC | 2 cut(s) | 504, 1659 |
| Bbv12I | GWGCWC | 1 cut(s) | 1073 |
| BbvI | GCAGC | 4 cut(s) | 548, 667, 1175, 1637 |
| BccI | CCATC | 4 cut(s) | 476, 1043, 1300, 1528 |
| BceAI | ACGGC | 1 cut(s) | 1399 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 323, 357, 983, 1017 |
| BciT130I | CCWGG | 3 cut(s) | 89, 918, 1344 |
| BclI | TGATCA | 4 cut(s) | 360, 1024, 1432, 1776 |
| BcoDI | GTCTC | 3 cut(s) | 26, 256, 496 |
| BfaI | CTAG | 6 cut(s) | 42, 152, 597, 857, 1593, 1796 |
| BfmI | CTRYAG | 1 cut(s) | 1189 |
| BglII | AGATCT | 1 cut(s) | 126 |
| BisI | GCNGC | 4 cut(s) | 537, 656, 1189, 1626 |
| BlnI | CCTAGG | 1 cut(s) | 1795 |
| BlpI | GCTNAGC | 1 cut(s) | 651 |
| BlsI | GCNGC | 4 cut(s) | 538, 657, 1190, 1627 |
| Bme1390I | CCNGG | 3 cut(s) | 89, 918, 1344 |
| BmgT120I | GGNCC | 2 cut(s) | 1767, 1791 |
| BmiI | GGNNCC | 2 cut(s) | 720, 1793 |
| BmrFI | CCNGG | 3 cut(s) | 89, 918, 1344 |
| BmrI | ACTGGG | 1 cut(s) | 580 |
| BmsI | GCATC | 8 cut(s) | 54, 58, 1087, 1231, 1288, 1357, 1381, 1672 |
| BmuI | ACTGGG | 1 cut(s) | 580 |
| BpiI | GAAGAC | 2 cut(s) | 504, 1659 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1464, 1496, 1545, 1577 |
| BpmI | CTGGAG | 4 cut(s) | 104, 737, 774, 1640 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 651 |
| BpuEI | CTTGAG | 2 cut(s) | 201, 1271 |
| Bsa29I | ATCGAT | 2 cut(s) | 447, 456 |
| BsaAI | YACGTR | 1 cut(s) | 1782 |
| BsaBI | GATNNNNATC | 2 cut(s) | 789, 1245 |
| BsaI | GGTCTC | 2 cut(s) | 26, 496 |
| BsaJI | CCNNGG | 9 cut(s) | 102, 327, 516, 696, 917, 987, 1407, 1770, 1795 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1343, 1382, 1413 |
| Bse1I | ACTGG | 5 cut(s) | 492, 544, 575, 720, 757 |
| Bse8I | GATNNNNATC | 2 cut(s) | 789, 1245 |
| BseBI | CCWGG | 3 cut(s) | 89, 918, 1344 |
| BseCI | ATCGAT | 2 cut(s) | 447, 456 |
| BseDI | CCNNGG | 9 cut(s) | 102, 327, 516, 696, 917, 987, 1407, 1770, 1795 |
| BseGI | GGATG | 6 cut(s) | 55, 73, 580, 631, 1280, 1372 |
| BseJI | GATNNNNATC | 2 cut(s) | 789, 1245 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1343, 1382, 1413 |
| BseMII | CTCAG | 6 cut(s) | 252, 665, 1500, 1518, 1629, 1719 |
| BseNI | ACTGG | 5 cut(s) | 492, 544, 575, 720, 757 |
| BseRI | GAGGAG | 1 cut(s) | 1724 |
| BseXI | GCAGC | 4 cut(s) | 548, 667, 1175, 1637 |
| Bsh1285I | CGRYCG | 1 cut(s) | 456 |
| BshFI | GGCC | 8 cut(s) | 87, 236, 1016, 1386, 1406, 1613, 1768, 1792 |
| BshVI | ATCGAT | 2 cut(s) | 447, 456 |
| BsiEI | CGRYCG | 1 cut(s) | 456 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1073 |
| BslFI | GGGAC | 1 cut(s) | 129 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1343, 1382, 1413 |
| BsmAI | GTCTC | 3 cut(s) | 26, 256, 496 |
| BsmFI | GGGAC | 1 cut(s) | 129 |
| BsnI | GGCC | 8 cut(s) | 87, 236, 1016, 1386, 1406, 1613, 1768, 1792 |
| Bso31I | GGTCTC | 2 cut(s) | 26, 496 |
| Bsp1286I | GDGCHC | 2 cut(s) | 652, 1073 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 651 |
| Bsp19I | CCATGG | 2 cut(s) | 516, 1770 |
| BspACI | CCGC | 2 cut(s) | 138, 1364 |
| BspANI | GGCC | 8 cut(s) | 87, 236, 1016, 1386, 1406, 1613, 1768, 1792 |
| BspCNI | CTCAG | 6 cut(s) | 251, 664, 1501, 1517, 1628, 1718 |
| BspDI | ATCGAT | 2 cut(s) | 447, 456 |
| BspLI | GGNNCC | 2 cut(s) | 720, 1793 |
| BspMAI | CTGCAG | 1 cut(s) | 1193 |
| BspPI | GGATC | 2 cut(s) | 152, 1249 |
| BspTNI | GGTCTC | 2 cut(s) | 26, 496 |
| BsrI | ACTGG | 5 cut(s) | 492, 544, 575, 720, 757 |
| BssECI | CCNNGG | 9 cut(s) | 102, 327, 516, 696, 917, 987, 1407, 1770, 1795 |
| BssNAI | GTATAC | 2 cut(s) | 828, 1677 |
| BssT1I | CCWWGG | 6 cut(s) | 102, 516, 987, 1407, 1770, 1795 |
| Bst1107I | GTATAC | 2 cut(s) | 828, 1677 |
| Bst2UI | CCWGG | 3 cut(s) | 89, 918, 1344 |
| Bst4CI | ACNGT | 3 cut(s) | 63, 564, 832 |
| BstBAI | YACGTR | 1 cut(s) | 1782 |
| BstC8I | GCNNGC | 2 cut(s) | 99, 1089 |
| BstDEI | CTNAG | 6 cut(s) | 238, 651, 1504, 1509, 1615, 1705 |
| BstDSI | CCRYGG | 2 cut(s) | 516, 1770 |
| BstF5I | GGATG | 6 cut(s) | 55, 73, 580, 631, 1280, 1372 |
| BstMAI | GTCTC | 3 cut(s) | 26, 256, 496 |
| BstMCI | CGRYCG | 1 cut(s) | 456 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 404, 664, 1088, 1097, 1159 |
| BstNI | CCWGG | 3 cut(s) | 89, 918, 1344 |
| BstNSI | RCATGY | 1 cut(s) | 180 |
| BstSCI | CCNGG | 3 cut(s) | 87, 916, 1342 |
| BstSFI | CTRYAG | 1 cut(s) | 1189 |
| BstV1I | GCAGC | 4 cut(s) | 548, 667, 1175, 1637 |
| BstV2I | GAAGAC | 2 cut(s) | 504, 1659 |
| BstX2I | RGATCY | 1 cut(s) | 126 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1212, 1764 |
| BstYI | RGATCY | 1 cut(s) | 126 |
| BstZ17I | GTATAC | 2 cut(s) | 828, 1677 |
| Bsu15I | ATCGAT | 2 cut(s) | 447, 456 |
| BsuRI | GGCC | 8 cut(s) | 87, 236, 1016, 1386, 1406, 1613, 1768, 1792 |
| BsuTUI | ATCGAT | 2 cut(s) | 447, 456 |
| BtgI | CCRYGG | 2 cut(s) | 516, 1770 |
| BtsCI | GGATG | 6 cut(s) | 55, 73, 580, 631, 1280, 1372 |
| BtsI | GCAGTG | 2 cut(s) | 471, 1198 |
| BtsIMutI | CAGTG | 3 cut(s) | 471, 568, 1198 |
| Cac8I | GCNNGC | 2 cut(s) | 99, 1089 |
| Cfr13I | GGNCC | 2 cut(s) | 1767, 1791 |
| ClaI | ATCGAT | 2 cut(s) | 447, 456 |
| CseI | GACGC | 1 cut(s) | 1127 |
| Csp6I | GTAC | 1 cut(s) | 1652 |
| CviQI | GTAC | 1 cut(s) | 1652 |
| DdeI | CTNAG | 6 cut(s) | 238, 651, 1504, 1509, 1615, 1705 |
| DraIII | CACNNNGTG | 1 cut(s) | 859 |
| EaeI | YGGCCR | 3 cut(s) | 85, 1384, 1404 |
| Eco130I | CCWWGG | 6 cut(s) | 102, 516, 987, 1407, 1770, 1795 |
| Eco24I | GRGCYC | 1 cut(s) | 652 |
| Eco31I | GGTCTC | 2 cut(s) | 26, 496 |
| Eco57I | CTGAAG | 3 cut(s) | 744, 1403, 1661 |
| Eco72I | CACGTG | 1 cut(s) | 1782 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1791 |
| EcoRII | CCWGG | 3 cut(s) | 87, 916, 1342 |
| EcoT14I | CCWWGG | 6 cut(s) | 102, 516, 987, 1407, 1770, 1795 |
| EcoT22I | ATGCAT | 2 cut(s) | 1023, 1396 |
| EcoT38I | GRGCYC | 1 cut(s) | 652 |
| ErhI | CCWWGG | 6 cut(s) | 102, 516, 987, 1407, 1770, 1795 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1683, 1715 |
| FaqI | GGGAC | 1 cut(s) | 129 |
| FauI | CCCGC | 1 cut(s) | 131 |
| FbaI | TGATCA | 4 cut(s) | 360, 1024, 1432, 1776 |
| FblI | GTMKAC | 4 cut(s) | 628, 827, 1107, 1676 |
| Fnu4HI | GCNGC | 4 cut(s) | 537, 656, 1189, 1626 |
| FokI | GGATG | 6 cut(s) | 42, 80, 587, 618, 1267, 1379 |
| FriOI | GRGCYC | 1 cut(s) | 652 |
| Fsp4HI | GCNGC | 4 cut(s) | 537, 656, 1189, 1626 |
| FspBI | CTAG | 6 cut(s) | 42, 152, 597, 857, 1593, 1796 |
| GluI | GCNGC | 4 cut(s) | 537, 656, 1189, 1626 |
| GsuI | CTGGAG | 4 cut(s) | 104, 737, 774, 1640 |
| HaeIII | GGCC | 8 cut(s) | 87, 236, 1016, 1386, 1406, 1613, 1768, 1792 |
| HgaI | GACGC | 1 cut(s) | 1127 |
| HincII | GTYRAC | 2 cut(s) | 629, 1108 |
| HindII | GTYRAC | 2 cut(s) | 629, 1108 |
| HindIII | AAGCTT | 5 cut(s) | 396, 707, 1058, 1292, 1446 |
| HinfI | GANTC | 5 cut(s) | 117, 449, 625, 1511, 1664 |
| HphI | GGTGA | 4 cut(s) | 460, 845, 979, 1786 |
| Hpy166II | GTNNAC | 5 cut(s) | 594, 629, 828, 1108, 1677 |
| Hpy188III | TCNNGA | 7 cut(s) | 121, 218, 253, 788, 840, 925, 1288 |
| Hpy8I | GTNNAC | 5 cut(s) | 594, 629, 828, 1108, 1677 |
| Hpy99I | CGWCG | 1 cut(s) | 1263 |
| HpyAV | CCTTC | 7 cut(s) | 103, 223, 719, 899, 1406, 1525, 1600 |
| HpyCH4III | ACNGT | 3 cut(s) | 63, 564, 832 |
| HpyCH4IV | ACGT | 2 cut(s) | 702, 1781 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 404, 664, 1088, 1097, 1159 |
| HpyF3I | CTNAG | 6 cut(s) | 238, 651, 1504, 1509, 1615, 1705 |
| HpySE526I | ACGT | 2 cut(s) | 702, 1781 |
| Ksp22I | TGATCA | 4 cut(s) | 360, 1024, 1432, 1776 |
| LmnI | GCTCC | 5 cut(s) | 76, 718, 755, 885, 919 |
| Lsp1109I | GCAGC | 4 cut(s) | 548, 667, 1175, 1637 |
| LweI | GCATC | 8 cut(s) | 54, 58, 1087, 1231, 1288, 1357, 1381, 1672 |
| MaeI | CTAG | 6 cut(s) | 42, 152, 597, 857, 1593, 1796 |
| MaeII | ACGT | 2 cut(s) | 702, 1781 |
| MaeIII | GTNAC | 4 cut(s) | 550, 1139, 1217, 1315 |
| MboII | GAAGA | 9 cut(s) | 136, 203, 277, 504, 982, 1058, 1269, 1654, 1659 |
| MfeI | CAATTG | 2 cut(s) | 606, 1758 |
| MflI | RGATCY | 1 cut(s) | 126 |
| MhlI | GDGCHC | 2 cut(s) | 652, 1073 |
| MlsI | TGGCCA | 2 cut(s) | 87, 1406 |
| MluCI | AATT | 8 cut(s) | 36, 606, 1526, 1632, 1695, 1716, 1740, 1758 |
| MluNI | TGGCCA | 2 cut(s) | 87, 1406 |
| MlyI | GAGTC | 4 cut(s) | 111, 634, 1520, 1673 |
| MmeI | TCCRAC | 6 cut(s) | 45, 351, 372, 1015, 1034, 1282 |
| Mox20I | TGGCCA | 2 cut(s) | 87, 1406 |
| Mph1103I | ATGCAT | 2 cut(s) | 1023, 1396 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1416 |
| MscI | TGGCCA | 2 cut(s) | 87, 1406 |
| MseI | TTAA | 7 cut(s) | 143, 210, 711, 1010, 1722, 1739, 1801 |
| MslI | CAYNNNNRTG | 3 cut(s) | 413, 573, 1146 |
| Msp20I | TGGCCA | 2 cut(s) | 87, 1406 |
| MspA1I | CMGCKG | 3 cut(s) | 1188, 1364, 1508 |
| MspR9I | CCNGG | 3 cut(s) | 89, 918, 1344 |
| MunI | CAATTG | 2 cut(s) | 606, 1758 |
| MvaI | CCWGG | 3 cut(s) | 89, 918, 1344 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 404, 664, 1088, 1097, 1159 |
| NcoI | CCATGG | 2 cut(s) | 516, 1770 |
| NlaIV | GGNNCC | 2 cut(s) | 720, 1793 |
| NmuCI | GTSAC | 1 cut(s) | 1139 |
| NsiI | ATGCAT | 2 cut(s) | 1023, 1396 |
| NspI | RCATGY | 1 cut(s) | 180 |
| OliI | CACNNNNGTG | 2 cut(s) | 413, 1146 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 453, 990 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1416 |
| PfeI | GAWTC | 1 cut(s) | 449 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1343 |
| PkrI | GCNGC | 4 cut(s) | 538, 657, 1190, 1627 |
| Ple19I | CGATCG | 1 cut(s) | 456 |
| PleI | GAGTC | 4 cut(s) | 111, 633, 1519, 1672 |
| PmaCI | CACGTG | 1 cut(s) | 1782 |
| PmlI | CACGTG | 1 cut(s) | 1782 |
| PpsI | GAGTC | 4 cut(s) | 111, 633, 1519, 1672 |
| Ppu21I | YACGTR | 1 cut(s) | 1782 |
| Psp6I | CCWGG | 3 cut(s) | 87, 916, 1342 |
| PspCI | CACGTG | 1 cut(s) | 1782 |
| PspGI | CCWGG | 3 cut(s) | 87, 916, 1342 |
| PspN4I | GGNNCC | 2 cut(s) | 720, 1793 |
| PspPI | GGNCC | 2 cut(s) | 1767, 1791 |
| PstI | CTGCAG | 1 cut(s) | 1193 |
| PsuI | RGATCY | 1 cut(s) | 126 |
| PvuI | CGATCG | 1 cut(s) | 456 |
| PvuII | CAGCTG | 2 cut(s) | 1188, 1508 |
| RsaI | GTAC | 1 cut(s) | 1653 |
| RsaNI | GTAC | 1 cut(s) | 1652 |
| RseI | CAYNNNNRTG | 3 cut(s) | 413, 573, 1146 |
| SalI | GTCGAC | 2 cut(s) | 627, 1106 |
| SaqAI | TTAA | 7 cut(s) | 143, 210, 711, 1010, 1722, 1739, 1801 |
| SatI | GCNGC | 4 cut(s) | 537, 656, 1189, 1626 |
| Sau96I | GGNCC | 2 cut(s) | 1767, 1791 |
| SchI | GAGTC | 4 cut(s) | 111, 634, 1520, 1673 |
| ScrFI | CCNGG | 3 cut(s) | 89, 918, 1344 |
| SduI | GDGCHC | 2 cut(s) | 652, 1073 |
| SfaNI | GCATC | 8 cut(s) | 54, 58, 1087, 1231, 1288, 1357, 1381, 1672 |
| SfcI | CTRYAG | 1 cut(s) | 1189 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 413, 573, 1146 |
| SmlI | CTYRAG | 2 cut(s) | 216, 1286 |
| SmoI | CTYRAG | 2 cut(s) | 216, 1286 |
| Sse9I | AATT | 8 cut(s) | 36, 606, 1526, 1632, 1695, 1716, 1740, 1758 |
| SsiI | CCGC | 2 cut(s) | 138, 1364 |
| SspI | AATATT | 2 cut(s) | 1428, 1727 |
| SspMI | CTAG | 6 cut(s) | 42, 152, 597, 857, 1593, 1796 |
| StyD4I | CCNGG | 3 cut(s) | 87, 916, 1342 |
| StyI | CCWWGG | 6 cut(s) | 102, 516, 987, 1407, 1770, 1795 |
| TaaI | ACNGT | 3 cut(s) | 63, 564, 832 |
| TaiI | ACGT | 2 cut(s) | 705, 1784 |
| TaqI | TCGA | 8 cut(s) | 254, 447, 452, 456, 556, 628, 1107, 1331 |
| TasI | AATT | 8 cut(s) | 36, 606, 1526, 1632, 1695, 1716, 1740, 1758 |
| TatI | WGTACW | 1 cut(s) | 1651 |
| TfiI | GAWTC | 1 cut(s) | 449 |
| Tru1I | TTAA | 7 cut(s) | 143, 210, 711, 1010, 1722, 1739, 1801 |
| Tru9I | TTAA | 7 cut(s) | 143, 210, 711, 1010, 1722, 1739, 1801 |
| TscAI | CASTG | 3 cut(s) | 478, 575, 1198 |
| TseFI | GTSAC | 1 cut(s) | 1139 |
| TseI | GCWGC | 4 cut(s) | 536, 655, 1188, 1625 |
| Tsp45I | GTSAC | 1 cut(s) | 1139 |
| TspDTI | ATGAA | 4 cut(s) | 44, 196, 1269, 1533 |
| TspGWI | ACGGA | 1 cut(s) | 63 |
| TspRI | CASTG | 3 cut(s) | 478, 575, 1198 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1343 |
| XapI | RAATTY | 1 cut(s) | 1695 |
| XceI | RCATGY | 1 cut(s) | 180 |
| XmaJI | CCTAGG | 1 cut(s) | 1795 |
| XmiI | GTMKAC | 4 cut(s) | 628, 827, 1107, 1676 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1416 |
| XspI | CTAG | 6 cut(s) | 42, 152, 597, 857, 1593, 1796 |
| Zsp2I | ATGCAT | 2 cut(s) | 1023, 1396 |