Rh6DG046500

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000538
Physical Location & Seq
Reverse (-)
4915057 .. 4915527
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG046500.1

Sequence Viewer

Length: 471 bp
ATGCCCCTCAGAATTGAGGTTAACCTTTCATCATTCAGGTGCAATCTTTCCGAGGAAACGTCTGCTTTCGTCAAAGCTCAAGATGAGTTGAAGGTGACCTCAGACTTATCAGCCTCAATCACTCAGAAGAAGTTTGTGGTGCTGCAACAAACTTCAAAGTATGATGAGGTGAAGAAAGAAATTGTCGCCTTGGACGAGAAAGTTGCCGGCTTCAAGGCAATGATCAAAGAGTTGGAAGAACAAATCAAAAGGTTGGAAGCTTGTTTAGCCACAGAAGAGAGCAACAGGGTAAAGATTGATGAGGCTATCGGTTCCATCGAGAAACAAGTCACCACCGCGAGAGATGGATTGGTCTCGGACTTGGCACAAGCGTCTTCCATGGAAGGATCGACCCAAGCAGCTAACGAATTAGTAGCTCGAAAACAGTCGGACTGGGATAACCTAAAGCTGAGTTTTACTAAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

156

Amino Acids

17.35

Weight (kDa)

5.08

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 338
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 394
AgsI TTSAA 3 cut(s) 91, 156, 214
AluBI AGCT 5 cut(s) 77, 260, 401, 416, 448
AluI AGCT 5 cut(s) 77, 260, 401, 416, 448
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 142, 398
AsuHPI GGTGA 3 cut(s) 106, 181, 322
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 129, 410
BccI CCATC 2 cut(s) 323, 338
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BclI TGATCA 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 358
BisI GCNGC 2 cut(s) 143, 399
BlsI GCNGC 2 cut(s) 144, 400
BmiI GGNNCC 1 cut(s) 313
BmrI ACTGGG 1 cut(s) 442
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 3 cut(s) 51, 189, 378
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 51, 189, 378
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 4 cut(s) 22, 114, 137, 440
BseNI ACTGG 1 cut(s) 437
BseXI GCAGC 2 cut(s) 129, 410
Bsh1236I CGCG 1 cut(s) 338
BsiSI CCGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 358
Bso31I GGTCTC 1 cut(s) 358
Bsp143I GATC 2 cut(s) 222, 386
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 1 cut(s) 336
BspCNI CTCAG 4 cut(s) 21, 113, 136, 441
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 1 cut(s) 394
BspTNI GGTCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 3 cut(s) 51, 189, 378
BssMI GATC 2 cut(s) 222, 386
BssT1I CCWWGG 2 cut(s) 189, 378
Bst4CI ACNGT 1 cut(s) 426
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 5 cut(s) 8, 100, 123, 449, 459
BstDSI CCRYGG 1 cut(s) 378
BstEII GGTNACC 1 cut(s) 94
BstFNI CGCG 1 cut(s) 338
BstKTI GATC 2 cut(s) 225, 389
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 2 cut(s) 222, 386
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstPI GGTNACC 1 cut(s) 94
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 2 cut(s) 129, 410
BstV2I GAAGAC 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 206
CseI GACGC 1 cut(s) 360
CviAII CATG 2 cut(s) 379, 468
CviJI RGCY 9 cut(s) 77, 113, 210, 260, 269, 305, 401, 416, 448
CviKI_1 RGCY 9 cut(s) 77, 113, 210, 260, 269, 305, 401, 416, 448
DdeI CTNAG 5 cut(s) 8, 100, 123, 449, 459
DpnI GATC 2 cut(s) 224, 388
DpnII GATC 2 cut(s) 222, 386
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 2 cut(s) 189, 378
Eco31I GGTCTC 1 cut(s) 358
Eco91I GGTNACC 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 94
EcoT14I CCWWGG 2 cut(s) 189, 378
ErhI CCWWGG 2 cut(s) 189, 378
FaeI CATG 2 cut(s) 382, 471
FaiI YATR 3 cut(s) 162, 380, 469
FatI CATG 2 cut(s) 378, 467
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 143, 399
Fsp4HI GCNGC 2 cut(s) 143, 399
GluI GCNGC 2 cut(s) 143, 399
HapII CCGG 1 cut(s) 207
HgaI GACGC 1 cut(s) 360
Hin1II CATG 2 cut(s) 382, 471
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 258
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 1 cut(s) 207
HphI GGTGA 3 cut(s) 106, 181, 322
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 6 cut(s) 11, 52, 103, 126, 358, 430
Hpy188III TCNNGA 2 cut(s) 80, 319
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 85, 377
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 42, 145, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 5 cut(s) 8, 100, 123, 449, 459
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 2 cut(s) 382, 471
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 222
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 2 cut(s) 222, 386
LpnPI CCDG 4 cut(s) 22, 220, 271, 418
Lsp1109I GCAGC 2 cut(s) 129, 410
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 94, 328
MalI GATC 2 cut(s) 224, 388
MboI GATC 2 cut(s) 222, 386
MboII GAAGA 5 cut(s) 139, 184, 248, 287, 366
MluCI AATT 3 cut(s) 12, 180, 407
MmeI TCCRAC 3 cut(s) 213, 234, 408
MnlI CCTC 7 cut(s) 10, 17, 46, 109, 124, 160, 295
MroNI GCCGGC 1 cut(s) 206
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 37
MspI CCGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 266
NaeI GCCGGC 1 cut(s) 208
NcoI CCATGG 1 cut(s) 378
NdeII GATC 2 cut(s) 222, 386
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 382, 471
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 2 cut(s) 94, 328
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 315
PdiI GCCGGC 1 cut(s) 208
PkrI GCNGC 2 cut(s) 144, 400
PspEI GGTNACC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 37
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 143, 399
Sau3AI GATC 2 cut(s) 222, 386
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 3 cut(s) 12, 180, 407
SsiI CCGC 1 cut(s) 336
StyI CCWWGG 2 cut(s) 189, 378
TaaI ACNGT 1 cut(s) 426
TaiI ACGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 318, 389, 418
TasI AATT 3 cut(s) 12, 180, 407
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 2 cut(s) 94, 328
TseI GCWGC 2 cut(s) 142, 398
Tsp45I GTSAC 2 cut(s) 94, 328
TspDTI ATGAA 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.