RLG00000015041

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000538
Physical Location & Seq
Forward (+)
60970335 .. 60971463
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015041

Sequence Viewer

Length: 885 bp
ATGGAGAATTTTCATGTACTAGATGTCATCCTAGCCTTCCCAACCCCTATCCGATTTGGCGTTGCTTGTACTGTAAGGTCGTCTTCTGTGGTTTGCGTGTGGGCAGCCATATGTATGAGCATTATAAGAAGTCGAATCATTCTCTTGCTATCAGTTGCAGATAAATGCAAAAGCTCATCAAGTGATCCAACAATTGCAGGCTTTCTCCAAGAGAAGCTCGATGCTATGATGGTTGATGTTTCTAATCTCATTTCTGAACCATTTCCTAGCTTTGATTTTCATCAACCAGAGGCTAAGTCATCTTTTGGCCAGGACGAGTATGCATTGGCCAAGGAAGGACTCCAGAAGATCTTTGATCGGGGGTCAGAAGCTTTAGCTGATGACCAAGTGCAAAAAGAGTTTCTCACTTATACAGCCATGCTTTTATCAGTTGATTCATGCCAATCGCAGTTGAAGGCTAACCTTTCATCATTCACAGAAAACCTCCCAGAGGAAACATCCACTTTTGTTCAAGCTAAAAAAAAGTTGAAGGTGGTCTCTGACCTATCAGCTTCAGTTACCCACAAGAAGTTTATGCTCCGGCAACAGAGTTCCAAGTATACTGAGATGAAGAAAGACAGTATTGCCTCAGAGGAGAAAATTGCCAATCTTAAGGCCAGGATTCAAAAGTTGGAAGCTTCTCTAGCCACAGAAGAGAGAAACAAGGCAAAGATTGATGAGGTTTTGGATTCCATCGAGACACAAGTACTCACTGCCAGAGATGGATTGGTCTCAGACTTGACACAAGTGTCTGCCATGGAGGGAACAACCCAAGCAGCTAACCTAGTAGCTCAACAACAGTCGGCCTGGAATAGCTTAAGGACTACTTTTACCAAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

295

Amino Acids

32.5

Weight (kDa)

5.58

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 125
AasI GACNNNNNNGTC 1 cut(s) 787
AccI GTMKAC 1 cut(s) 599
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 2 cut(s) 307, 327
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 3 cut(s) 18, 70, 747
AfiI CCNNNNNNNGG 1 cut(s) 490
AflII CTTAAG 2 cut(s) 650, 856
AgsI TTSAA 4 cut(s) 454, 512, 529, 665
AjnI CCWGG 3 cut(s) 309, 656, 845
Alw26I GTCTC 3 cut(s) 541, 731, 775
AlwI GGATC 1 cut(s) 179
AoxI GGCC 4 cut(s) 307, 327, 654, 843
ApeKI GCWGC 2 cut(s) 104, 815
ApoI RAATTY 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 261
BalI TGGCCA 2 cut(s) 309, 329
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 116, 827
BccI CCATC 3 cut(s) 223, 740, 755
BciT130I CCWGG 3 cut(s) 311, 658, 847
BcoDI GTCTC 3 cut(s) 541, 731, 775
BfaI CTAG 5 cut(s) 20, 32, 267, 683, 824
BfrI CTTAAG 2 cut(s) 650, 856
BglII AGATCT 1 cut(s) 348
BisI GCNGC 2 cut(s) 105, 816
BlsI GCNGC 2 cut(s) 106, 817
BmcAI AGTACT 1 cut(s) 747
Bme1390I CCNGG 3 cut(s) 311, 658, 847
BmrFI CCNGG 3 cut(s) 311, 658, 847
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 279
BsaI GGTCTC 2 cut(s) 541, 775
BsaJI CCNNGG 2 cut(s) 330, 795
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 3 cut(s) 311, 658, 847
BseDI CCNNGG 2 cut(s) 330, 795
BseGI GGATG 2 cut(s) 27, 497
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMII CTCAG 3 cut(s) 594, 642, 786
BseRI GAGGAG 1 cut(s) 647
BseXI GCAGC 2 cut(s) 116, 827
BshFI GGCC 4 cut(s) 309, 329, 656, 845
BsiSI CCGG 1 cut(s) 580
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 3 cut(s) 541, 731, 775
BsnI GGCC 4 cut(s) 309, 329, 656, 845
Bso31I GGTCTC 2 cut(s) 541, 775
Bsp143I GATC 3 cut(s) 184, 348, 355
Bsp19I CCATGG 1 cut(s) 795
BspANI GGCC 4 cut(s) 309, 329, 656, 845
BspCNI CTCAG 3 cut(s) 595, 641, 785
BspPI GGATC 1 cut(s) 179
BspTI CTTAAG 2 cut(s) 650, 856
BspTNI GGTCTC 2 cut(s) 541, 775
BssECI CCNNGG 2 cut(s) 330, 795
BssMI GATC 3 cut(s) 184, 348, 355
BssNAI GTATAC 1 cut(s) 600
BssT1I CCWWGG 2 cut(s) 330, 795
Bst1107I GTATAC 1 cut(s) 600
Bst2UI CCWGG 3 cut(s) 311, 658, 847
Bst4CI ACNGT 3 cut(s) 73, 620, 840
Bst6I CTCTTC 1 cut(s) 687
BstAFI CTTAAG 2 cut(s) 650, 856
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 4 cut(s) 294, 603, 628, 772
BstDSI CCRYGG 1 cut(s) 795
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 2 cut(s) 27, 497
BstKTI GATC 3 cut(s) 187, 351, 358
BstMAI GTCTC 3 cut(s) 541, 731, 775
BstMBI GATC 3 cut(s) 184, 348, 355
BstMWI GCNNNNNNNGC 1 cut(s) 683
BstNI CCWGG 3 cut(s) 311, 658, 847
BstSCI CCNGG 3 cut(s) 309, 656, 845
BstV1I GCAGC 2 cut(s) 116, 827
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
BstZ17I GTATAC 1 cut(s) 600
BsuRI GGCC 4 cut(s) 309, 329, 656, 845
BtgI CCRYGG 1 cut(s) 795
BtsCI GGATG 2 cut(s) 27, 497
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 1 cut(s) 750
Cac8I GCNNGC 1 cut(s) 199
Csp6I GTAC 3 cut(s) 17, 69, 746
CviAII CATG 5 cut(s) 14, 418, 438, 796, 882
CviQI GTAC 3 cut(s) 17, 69, 746
DdeI CTNAG 4 cut(s) 294, 603, 628, 772
DpnI GATC 3 cut(s) 186, 350, 357
DpnII GATC 3 cut(s) 184, 348, 355
DrdI GACNNNNNNGTC 1 cut(s) 787
DseDI GACNNNNNNGTC 1 cut(s) 787
EaeI YGGCCR 2 cut(s) 307, 327
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 2 cut(s) 330, 795
Eco31I GGTCTC 2 cut(s) 541, 775
Eco57I CTGAAG 1 cut(s) 537
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoRII CCWGG 3 cut(s) 309, 656, 845
EcoT14I CCWWGG 2 cut(s) 330, 795
EcoT22I ATGCAT 1 cut(s) 325
ErhI CCWWGG 2 cut(s) 330, 795
FaeI CATG 5 cut(s) 17, 421, 441, 799, 885
FalI AAGNNNNNCTT 4 cut(s) 67, 99, 850, 882
FatI CATG 5 cut(s) 13, 417, 437, 795, 881
FauNDI CATATG 1 cut(s) 110
FblI GTMKAC 1 cut(s) 599
Fnu4HI GCNGC 2 cut(s) 105, 816
FokI GGATG 2 cut(s) 14, 484
Fsp4HI GCNGC 2 cut(s) 105, 816
FspBI CTAG 5 cut(s) 20, 32, 267, 683, 824
GluI GCNGC 2 cut(s) 105, 816
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 4 cut(s) 309, 329, 656, 845
HapII CCGG 1 cut(s) 580
Hin1II CATG 5 cut(s) 17, 421, 441, 799, 885
HindIII AAGCTT 2 cut(s) 369, 675
HinfI GANTC 5 cut(s) 135, 339, 434, 661, 728
HpaII CCGG 1 cut(s) 580
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 6 cut(s) 53, 256, 367, 541, 631, 775
Hpy188III TCNNGA 2 cut(s) 343, 736
Hpy8I GTNNAC 1 cut(s) 600
HpyAV CCTTC 4 cut(s) 46, 329, 448, 523
HpyCH4III ACNGT 3 cut(s) 73, 620, 840
HpyCH4V TGCA 6 cut(s) 158, 168, 197, 323, 391, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 683
HpyF3I CTNAG 4 cut(s) 294, 603, 628, 772
Hsp92II CATG 5 cut(s) 17, 421, 441, 799, 885
Kzo9I GATC 3 cut(s) 184, 348, 355
LmnI GCTCC 1 cut(s) 582
Lsp1109I GCAGC 2 cut(s) 116, 827
LweI GCATC 1 cut(s) 211
MaeI CTAG 5 cut(s) 20, 32, 267, 683, 824
MaeIII GTNAC 1 cut(s) 556
MalI GATC 3 cut(s) 186, 350, 357
MboI GATC 3 cut(s) 184, 348, 355
MboII GAAGA 4 cut(s) 75, 358, 622, 704
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 1 cut(s) 348
MlsI TGGCCA 2 cut(s) 309, 329
MluCI AATT 3 cut(s) 7, 192, 639
MluNI TGGCCA 2 cut(s) 309, 329
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 2 cut(s) 212, 651
MnlI CCTC 7 cut(s) 283, 484, 494, 625, 637, 712, 793
Mox20I TGGCCA 2 cut(s) 309, 329
Mph1103I ATGCAT 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 261
MscI TGGCCA 2 cut(s) 309, 329
MseI TTAA 2 cut(s) 651, 857
MslI CAYNNNNRTG 1 cut(s) 113
Msp20I TGGCCA 2 cut(s) 309, 329
MspCI CTTAAG 2 cut(s) 650, 856
MspI CCGG 1 cut(s) 580
MspR9I CCNGG 3 cut(s) 311, 658, 847
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 3 cut(s) 311, 658, 847
MwoI GCNNNNNNNGC 1 cut(s) 683
NcoI CCATGG 1 cut(s) 795
NdeI CATATG 1 cut(s) 110
NdeII GATC 3 cut(s) 184, 348, 355
NlaIII CATG 5 cut(s) 17, 421, 441, 799, 885
NsiI ATGCAT 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 4 cut(s) 135, 434, 661, 728
PkrI GCNGC 2 cut(s) 106, 817
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PsiI TTATAA 1 cut(s) 125
Psp6I CCWGG 3 cut(s) 309, 656, 845
PspGI CCWGG 3 cut(s) 309, 656, 845
PsuI RGATCY 1 cut(s) 348
RsaI GTAC 3 cut(s) 18, 70, 747
RsaNI GTAC 3 cut(s) 17, 69, 746
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 2 cut(s) 651, 857
SatI GCNGC 2 cut(s) 105, 816
Sau3AI GATC 3 cut(s) 184, 348, 355
ScaI AGTACT 1 cut(s) 747
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 3 cut(s) 311, 658, 847
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 650, 856
SmoI CTYRAG 2 cut(s) 650, 856
Sse9I AATT 3 cut(s) 7, 192, 639
SspMI CTAG 5 cut(s) 20, 32, 267, 683, 824
StyD4I CCNGG 3 cut(s) 309, 656, 845
StyI CCWWGG 2 cut(s) 330, 795
TaaI ACNGT 3 cut(s) 73, 620, 840
TaqI TCGA 3 cut(s) 133, 219, 735
TasI AATT 3 cut(s) 7, 192, 639
TatI WGTACW 3 cut(s) 16, 68, 745
TfiI GAWTC 4 cut(s) 135, 434, 661, 728
Tru1I TTAA 2 cut(s) 651, 857
Tru9I TTAA 2 cut(s) 651, 857
TscAI CASTG 1 cut(s) 757
TseI GCWGC 2 cut(s) 104, 815
TspDTI ATGAA 4 cut(s) 269, 426, 456, 623
TspRI CASTG 1 cut(s) 757
Vha464I CTTAAG 2 cut(s) 650, 856
XagI CCTNNNNNAGG 1 cut(s) 488
XapI RAATTY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XmiI GTMKAC 1 cut(s) 599
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 5 cut(s) 20, 32, 267, 683, 824
ZrmI AGTACT 1 cut(s) 747
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.