Rh6DG046400

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000538
Physical Location & Seq
Reverse (-)
4870029 .. 4888076
18048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG046400.1

Sequence Viewer

Length: 2613 bp
ATGGTTGGTGTTGCTGATCTTATCTCAAAGCCATTTCCTGGCTTCAATAATAATCCAGTGGATGCCAAGCCATTTGACGGCCATGATGTGTTTGCATTTGCCAAGGAAGGACTTCAGAAAATCTTTGATCAGGGGTTAGAAGCTTTAGCTAACGACAACTGCAAAGTGGCCTCAGACTTAGCAGCTTCATTTACTCTGAAGAAATTTGTGCTCCAGCAAGAGTCTTCCAAGTATACCGATGCAAAGAAAGAAATTCTTGCCTCAGAGGAGAAAATTGCTAACCTTAAGGCAACTCTAGCAACAGAAGAGAGCAAGAAGGCGAAGTTTGATGAGGTTTTGGATTCGATTGAGACTCAAGTAACCTCTGCCAAAGATAGATTGGTCTCGGACTTAGCACAAGTGTCTGGCATGGAGGGAACAGTCCAAGTTGCTACAAACTCCAAGCTTTACACTTGGTGGGCCACACTGCTATCAGCCGAGTCATGCCCCTCAGAGTTGAAGGTTGACCTTTCATCATTCAGATGTAATCTTTCGGAAGAAACCTCTGCCTTCATTAAAGCTCAAGATGAGTTGAAGGTGGCCTCAGAGTTATCAGTCTCGATTACCCAGAAGAAGTTTGTTGGGCGGCAACAAACTTCAAAGTATGATGAGGTAAAGAAAGAAATGACTGCCTCGGACGAGAAAGTTGCCAAATATAAGTCCATGATCAAAGAGTTGGAGGCACAAATCAAAGGGTTGGAAGCTTGTTTAGCCACAGAAGTGAGCAACAGGAAAAAGATTGATGGGGTTATCGATTCGATCGAGACACAAGTCACCACTGCGAGAGATGGACTGGTCTCTGACTTGGCACAAGTGTCTTCCATGGAGGGAACGACCCAAGCAGCTTACCAGTTAGTAACTCGAAAACAGTGTCATTGGGATAACCTAAAGACTATGTTTACTAGGTTTGCAATTGCAAACGCCACCATGAGTCGACATCCTAGTGTGAAGTGGGCTCAGCAGCCTGATACGCTTTACATCACTATTGAGTTGCCTGATGCCCAGGATGTAAAGCTTAAACTGGAGCCTGAAGGAAAGTTTCTATTCTCTGCTACCACTGGAGCAGAAAAGACACCCTACGTAGTTGATCTTGATCTCTATGACAAGATTGATGTAAATGAGAGGCATGAAATGAGGAATTGTAGACAATTGAAGTCCAAAGAGGTAAGGGCCAAGCAGACGAAGTTTCACCAAGAATATAGAGTCCAAAATAAGTTGCATGTTGCCAATGATGGTGCTGCTTCTAACAAGGATCAGAGTCATCAGACTATCAATGATGTTGTAAGAGAGGGTGTGAACAGGGTGGAAGAGCCACCCATTGTGAGCAGGGTGGAAAAGTCACCCGTTTTGAACAGGGTGGAAGAGTCACCCATTGTGGAGCAAATAGTGACCAGAGAAGCTATTAACCTGGACAAACAGGTTGTTCAGATTGATCAAAATGAAGCTACTAATATTGCCTCCTCAAGTAGGCATAATGAGAGTCCTGGTATAAACAAAGAAATTGGAAATAAAGAAGCTGCAGTGCTAGAAATAGTTGGTCACTTAGTGACAGACGCTAATGACGACTCGAAAGATGAGGGTCATGACTCCTCTGATAGTGGTTCTCATGTTAGTAACTCTCCTTCTCGCACTTGGAGTGCCATTTTTGAGGAGGAGCATGATGGAATGGTAAAATCGGTAGAACCAGCTAGTGCTCCACCTAGTTTTGGTCCACCTCCTGGGTTTGGCCCTTCAGATTCCCGTGCTGCTCTAGAATTGGATGCTGTTACGAGATGCCAGTACCCCAGTGGGAATTGGTTTTGTTTATACTGTAAGGACATTCTCTGTGGATCAAACAGTCACATGAGTGAGCATTATGAGCTGACAGATCATTGTCTTGCTATCAGCTGCAGTGATAGACTTCCATTTGTTTGGTGTTACTCCTGCAAGGCAACTGCCGATGTTCATCAAGAAAAATCCTCATTGAAGCTAGAGAAGCTTGATGCTATGATGGTTGATGTTGCTGATCTCATATCGAAGCCATTTCCTGGCTTCAATAATAATCCAGTGGATGCCAAGCCATTTGACGGTCATGATGCTTTTGTATTGGCCAAGGAAGGACTTCAGAAAATCTTTGATCAGGGGTTAGAAGCTTTAGCTAATGACCAACTGCAAAGAGAGTTTCTCACTTATTCAGCCATACTTCTATCAGTTGATTCCTGCCCATCAGAATTGAAGGCTGACCTTTCATCATTCAGAGGTAATCTTCCAGAAGAAACCTCTGCTTTTATTCAAGCTAGATATGAGTTGAAGGTGGCCTCAGACCTAGCAGCTTCAATTACTCTGAAGAAGTTTGTGCTCCAGCAAGAGTCTTCCAAGTATACCGATGCAAAGAAAGAAATTCTTGCCTCAGAGGAGAGAATTGCCAAACTTAAGGCTACTCTAGCAACAGAAGAGAGCAAGAAGGCAAAGTTTGATGAGGTTTTGGGTTCGATCGAGACTCAAGTAACCTCTGCCAAAGATGGATTGGTCTCGGACTTGGCACAAGTTTCCGGCATGGAGGCTAGGGAACAATCCAAGCTGCTAACCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

870

Amino Acids

96.07

Weight (kDa)

5.14

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 327 - 387 7.2e-07 CS domain
zf-UBP PF02148 604 - 659 1.2e-11 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 38, 1757, 2066
AccI GTMKAC 4 cut(s) 233, 973, 1183, 2399
AciI CCGC 1 cut(s) 625
AclWI GGATC 2 cut(s) 1299, 1876
AcoI YGGCCR 2 cut(s) 79, 2127
AcsI RAATTY 3 cut(s) 203, 252, 2418
AcuI CTGAAG 6 cut(s) 98, 218, 1089, 1755, 2126, 2384
AdeI CACNNNGTG 2 cut(s) 456, 1585
AfaI GTAC 1 cut(s) 1820
AfiI CCNNNNNNNGG 8 cut(s) 38, 77, 1506, 1745, 1757, 1763, 2066, 2105
AflII CTTAAG 2 cut(s) 284, 2450
AjnI CCWGG 6 cut(s) 37, 1041, 1446, 1522, 1756, 2065
AleI CACNNNNGTG 2 cut(s) 758, 1884
Alw21I GWGCWC 3 cut(s) 213, 1735, 2379
Alw26I GTCTC 7 cut(s) 344, 388, 601, 797, 841, 2510, 2554
AlwI GGATC 2 cut(s) 1299, 1876
AoxI GGCC 8 cut(s) 79, 168, 459, 579, 1209, 1765, 2127, 2334
ApeKI GCWGC 9 cut(s) 182, 881, 1000, 1277, 1556, 1784, 1926, 2348, 2599
ApoI RAATTY 3 cut(s) 203, 252, 2418
ArsI GACNNNNNNTTYG 2 cut(s) 895, 927
Asp700I GAANNNNTTC 2 cut(s) 111, 2139
AspS9I GGNCC 4 cut(s) 459, 1209, 1748, 1766
AsuHPI GGTGA 4 cut(s) 805, 1220, 1371, 1398
AvaII GGWCC 1 cut(s) 1748
BalI TGGCCA 1 cut(s) 2129
BanII GRGCYC 1 cut(s) 997
BarI GAAGNNNNNNTAC 2 cut(s) 1645, 1677
BbsI GAAGAC 3 cut(s) 216, 849, 2382
Bbv12I GWGCWC 3 cut(s) 213, 1735, 2379
BbvI GCAGC 9 cut(s) 194, 893, 1012, 1264, 1543, 1771, 1913, 2360, 2586
BccI CCATC 7 cut(s) 776, 821, 1265, 1694, 2023, 2251, 2534
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 668, 702
BciT130I CCWGG 6 cut(s) 39, 1043, 1448, 1524, 1758, 2067
BclI TGATCA 4 cut(s) 127, 705, 1471, 2155
BcoDI GTCTC 7 cut(s) 344, 388, 601, 797, 841, 2510, 2554
BfmI CTRYAG 2 cut(s) 1557, 1927
BfrI CTTAAG 2 cut(s) 284, 2450
BlpI GCTNAGC 1 cut(s) 996
Bme1390I CCNGG 6 cut(s) 39, 1043, 1448, 1524, 1758, 2067
Bme18I GGWCC 1 cut(s) 1748
BmgT120I GGNCC 4 cut(s) 459, 1209, 1748, 1766
BmiI GGNNCC 1 cut(s) 1065
BmrFI CCNGG 6 cut(s) 39, 1043, 1448, 1524, 1758, 2067
BmrI ACTGGG 1 cut(s) 1818
BmsI GCATC 9 cut(s) 52, 229, 1027, 1789, 1802, 2011, 2080, 2104, 2395
BmuI ACTGGG 1 cut(s) 1818
BoxI GACNNNNGTC 1 cut(s) 809
BpiI GAAGAC 3 cut(s) 216, 849, 2382
BplI GAGNNNNNCTC 2 cut(s) 2187, 2219
BpmI CTGGAG 4 cut(s) 197, 1082, 1119, 2363
Bpu1102I GCTNAGC 1 cut(s) 996
BpuEI CTTGAG 4 cut(s) 339, 546, 1486, 2505
Bsa29I ATCGAT 1 cut(s) 792
BsaAI YACGTR 1 cut(s) 1120
BsaBI GATNNNNATC 2 cut(s) 1131, 1983
BsaI GGTCTC 3 cut(s) 388, 841, 2554
BsaJI CCNNGG 6 cut(s) 102, 672, 861, 1041, 1757, 2130
Bsc4I CCNNNNNNNGG 8 cut(s) 38, 77, 1506, 1745, 1757, 1763, 2066, 2105
Bse1I ACTGG 9 cut(s) 56, 837, 889, 1065, 1102, 1816, 1824, 2084, 2607
Bse8I GATNNNNATC 2 cut(s) 1131, 1983
BseBI CCWGG 6 cut(s) 39, 1043, 1448, 1524, 1758, 2067
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 6 cut(s) 102, 672, 861, 1041, 1757, 2130
BseGI GGATG 5 cut(s) 67, 976, 1051, 1804, 2095
BseJI GATNNNNATC 2 cut(s) 1131, 1983
BseLI CCNNNNNNNGG 8 cut(s) 38, 77, 1506, 1745, 1757, 1763, 2066, 2105
BseMII CTCAG 7 cut(s) 186, 276, 504, 597, 1010, 2352, 2442
BseNI ACTGG 9 cut(s) 56, 837, 889, 1065, 1102, 1816, 1824, 2084, 2607
BseRI GAGGAG 6 cut(s) 281, 1489, 1618, 1703, 1706, 2447
BseXI GCAGC 9 cut(s) 194, 893, 1012, 1264, 1543, 1771, 1913, 2360, 2586
Bsh1285I CGRYCG 2 cut(s) 801, 2514
BshFI GGCC 8 cut(s) 81, 170, 461, 581, 1211, 1767, 2129, 2336
BshVI ATCGAT 1 cut(s) 792
BsiEI CGRYCG 2 cut(s) 801, 2514
BsiHKAI GWGCWC 3 cut(s) 213, 1735, 2379
BsiSI CCGG 1 cut(s) 2571
BslI CCNNNNNNNGG 8 cut(s) 38, 77, 1506, 1745, 1757, 1763, 2066, 2105
BsmAI GTCTC 7 cut(s) 344, 388, 601, 797, 841, 2510, 2554
BsnI GGCC 8 cut(s) 81, 170, 461, 581, 1211, 1767, 2129, 2336
Bso31I GGTCTC 3 cut(s) 388, 841, 2554
Bsp1286I GDGCHC 4 cut(s) 213, 997, 1735, 2379
Bsp1720I GCTNAGC 1 cut(s) 996
Bsp19I CCATGG 1 cut(s) 861
BspACI CCGC 1 cut(s) 625
BspANI GGCC 8 cut(s) 81, 170, 461, 581, 1211, 1767, 2129, 2336
BspCNI CTCAG 7 cut(s) 185, 275, 503, 596, 1009, 2351, 2441
BspDI ATCGAT 1 cut(s) 792
BspHI TCATGA 2 cut(s) 1621, 2110
BspLI GGNNCC 1 cut(s) 1065
BspMAI CTGCAG 2 cut(s) 1561, 1931
BspPI GGATC 2 cut(s) 1299, 1876
BspQI GCTCTTC 1 cut(s) 1341
BspTI CTTAAG 2 cut(s) 284, 2450
BspTNI GGTCTC 3 cut(s) 388, 841, 2554
BsrI ACTGG 9 cut(s) 56, 837, 889, 1065, 1102, 1816, 1824, 2084, 2607
BssECI CCNNGG 6 cut(s) 102, 672, 861, 1041, 1757, 2130
BssNAI GTATAC 2 cut(s) 234, 2400
BssT1I CCWWGG 3 cut(s) 102, 861, 2130
Bst1107I GTATAC 2 cut(s) 234, 2400
Bst2UI CCWGG 6 cut(s) 39, 1043, 1448, 1524, 1758, 2067
Bst4CI ACNGT 5 cut(s) 421, 909, 1850, 1877, 2108
Bst6I CTCTTC 4 cut(s) 300, 1341, 1395, 2466
BstAFI CTTAAG 2 cut(s) 284, 2450
BstBAI YACGTR 1 cut(s) 1120
BstDSI CCRYGG 1 cut(s) 861
BstENI CCTNNNNNAGG 1 cut(s) 1504
BstF5I GGATG 5 cut(s) 67, 976, 1051, 1804, 2095
BstMAI GTCTC 7 cut(s) 344, 388, 601, 797, 841, 2510, 2554
BstMCI CGRYCG 2 cut(s) 801, 2514
BstMWI GCNNNNNNNGC 6 cut(s) 296, 749, 1009, 1897, 2014, 2462
BstNI CCWGG 6 cut(s) 39, 1043, 1448, 1524, 1758, 2067
BstNSI RCATGY 1 cut(s) 1262
BstPAI GACNNNNGTC 1 cut(s) 809
BstSCI CCNGG 6 cut(s) 37, 1041, 1446, 1522, 1756, 2065
BstSFI CTRYAG 2 cut(s) 1557, 1927
BstSNI TACGTA 1 cut(s) 1120
BstV1I GCAGC 9 cut(s) 194, 893, 1012, 1264, 1543, 1771, 1913, 2360, 2586
BstV2I GAAGAC 3 cut(s) 216, 849, 2382
BstXI CCANNNNNNTGG 1 cut(s) 1950
BstZ17I GTATAC 2 cut(s) 234, 2400
Bsu15I ATCGAT 1 cut(s) 792
BsuRI GGCC 8 cut(s) 81, 170, 461, 581, 1211, 1767, 2129, 2336
BsuTUI ATCGAT 1 cut(s) 792
BtgI CCRYGG 1 cut(s) 861
BtsCI GGATG 5 cut(s) 67, 976, 1051, 1804, 2095
BtsI GCAGTG 4 cut(s) 464, 816, 1566, 1936
BtsIMutI CAGTG 9 cut(s) 63, 464, 816, 914, 1095, 1566, 1831, 1936, 2091
CciI TCATGA 2 cut(s) 1621, 2110
Cfr13I GGNCC 4 cut(s) 459, 1209, 1748, 1766
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 1 cut(s) 1601
Csp6I GTAC 1 cut(s) 1819
CviQI GTAC 1 cut(s) 1819
DraIII CACNNNGTG 2 cut(s) 456, 1585
EaeI YGGCCR 2 cut(s) 79, 2127
Eam1104I CTCTTC 4 cut(s) 300, 1341, 1395, 2466
EarI CTCTTC 4 cut(s) 300, 1341, 1395, 2466
Eco105I TACGTA 1 cut(s) 1120
Eco130I CCWWGG 3 cut(s) 102, 861, 2130
Eco24I GRGCYC 1 cut(s) 997
Eco31I GGTCTC 3 cut(s) 388, 841, 2554
Eco47I GGWCC 1 cut(s) 1748
Eco57I CTGAAG 6 cut(s) 98, 218, 1089, 1755, 2126, 2384
EcoNI CCTNNNNNAGG 1 cut(s) 1504
EcoRII CCWGG 6 cut(s) 37, 1041, 1446, 1522, 1756, 2065
EcoT14I CCWWGG 3 cut(s) 102, 861, 2130
EcoT38I GRGCYC 1 cut(s) 997
ErhI CCWWGG 3 cut(s) 102, 861, 2130
FalI AAGNNNNNCTT 4 cut(s) 240, 272, 2406, 2438
FbaI TGATCA 4 cut(s) 127, 705, 1471, 2155
FblI GTMKAC 4 cut(s) 233, 973, 1183, 2399
FokI GGATG 5 cut(s) 74, 963, 1058, 1811, 2102
FriOI GRGCYC 1 cut(s) 997
GsuI CTGGAG 4 cut(s) 197, 1082, 1119, 2363
HaeIII GGCC 8 cut(s) 81, 170, 461, 581, 1211, 1767, 2129, 2336
HapII CCGG 1 cut(s) 2571
HgaI GACGC 1 cut(s) 1601
HincII GTYRAC 2 cut(s) 505, 974
HindII GTYRAC 2 cut(s) 505, 974
HindIII AAGCTT 6 cut(s) 141, 443, 741, 1052, 2015, 2169
HpaII CCGG 1 cut(s) 2571
HphI GGTGA 4 cut(s) 805, 1220, 1371, 1398
Hpy166II GTNNAC 8 cut(s) 234, 505, 939, 974, 1184, 1336, 1751, 2400
Hpy8I GTNNAC 8 cut(s) 234, 505, 939, 974, 1184, 1336, 1751, 2400
HpyCH4III ACNGT 5 cut(s) 421, 909, 1850, 1877, 2108
HpyCH4IV ACGT 1 cut(s) 1119
HpyF10VI GCNNNNNNNGC 6 cut(s) 296, 749, 1009, 1897, 2014, 2462
HpySE526I ACGT 1 cut(s) 1119
Ksp22I TGATCA 4 cut(s) 127, 705, 1471, 2155
LguI GCTCTTC 1 cut(s) 1341
LmnI GCTCC 7 cut(s) 216, 1063, 1100, 1417, 1693, 1738, 2382
Lsp1109I GCAGC 9 cut(s) 194, 893, 1012, 1264, 1543, 1771, 1913, 2360, 2586
LweI GCATC 9 cut(s) 52, 229, 1027, 1789, 1802, 2011, 2080, 2104, 2395
MaeII ACGT 1 cut(s) 1119
MfeI CAATTG 2 cut(s) 951, 1187
MhlI GDGCHC 4 cut(s) 213, 997, 1735, 2379
MlsI TGGCCA 1 cut(s) 2129
MluNI TGGCCA 1 cut(s) 2129
MmeI TCCRAC 2 cut(s) 696, 717
Mox20I TGGCCA 1 cut(s) 2129
MroXI GAANNNNTTC 2 cut(s) 111, 2139
MscI TGGCCA 1 cut(s) 2129
MseI TTAA 5 cut(s) 285, 555, 1056, 1443, 2451
MslI CAYNNNNRTG 4 cut(s) 520, 758, 981, 1884
Msp20I TGGCCA 1 cut(s) 2129
MspA1I CMGCKG 1 cut(s) 1926
MspCI CTTAAG 2 cut(s) 284, 2450
MspI CCGG 1 cut(s) 2571
MspR9I CCNGG 6 cut(s) 39, 1043, 1448, 1524, 1758, 2067
MunI CAATTG 2 cut(s) 951, 1187
MvaI CCWGG 6 cut(s) 39, 1043, 1448, 1524, 1758, 2067
MwoI GCNNNNNNNGC 6 cut(s) 296, 749, 1009, 1897, 2014, 2462
NcoI CCATGG 1 cut(s) 861
NlaIV GGNNCC 1 cut(s) 1065
NmeAIII GCCGAG 1 cut(s) 502
NmuCI GTSAC 7 cut(s) 811, 1377, 1404, 1426, 1577, 1585, 1877
NspI RCATGY 1 cut(s) 1262
OliI CACNNNNGTG 2 cut(s) 758, 1884
PagI TCATGA 2 cut(s) 1621, 2110
PciSI GCTCTTC 1 cut(s) 1341
PcsI WCGNNNNNNNCGW 2 cut(s) 798, 1599
PdmI GAANNNNTTC 2 cut(s) 111, 2139
PfeI GAWTC 4 cut(s) 341, 794, 1775, 2234
PflMI CCANNNNNTGG 3 cut(s) 38, 1757, 2066
Ple19I CGATCG 2 cut(s) 801, 2514
Ppu21I YACGTR 1 cut(s) 1120
PshAI GACNNNNGTC 1 cut(s) 809
Psp6I CCWGG 6 cut(s) 37, 1041, 1446, 1522, 1756, 2065
PspGI CCWGG 6 cut(s) 37, 1041, 1446, 1522, 1756, 2065
PspN4I GGNNCC 1 cut(s) 1065
PspPI GGNCC 4 cut(s) 459, 1209, 1748, 1766
PstI CTGCAG 2 cut(s) 1561, 1931
PvuI CGATCG 2 cut(s) 801, 2514
PvuII CAGCTG 1 cut(s) 1926
RsaI GTAC 1 cut(s) 1820
RsaNI GTAC 1 cut(s) 1819
RseI CAYNNNNRTG 4 cut(s) 520, 758, 981, 1884
SalI GTCGAC 1 cut(s) 972
SapI GCTCTTC 1 cut(s) 1341
SaqAI TTAA 5 cut(s) 285, 555, 1056, 1443, 2451
Sau96I GGNCC 4 cut(s) 459, 1209, 1748, 1766
ScrFI CCNGG 6 cut(s) 39, 1043, 1448, 1524, 1758, 2067
SduI GDGCHC 4 cut(s) 213, 997, 1735, 2379
SfaNI GCATC 9 cut(s) 52, 229, 1027, 1789, 1802, 2011, 2080, 2104, 2395
SfcI CTRYAG 2 cut(s) 1557, 1927
SinI GGWCC 1 cut(s) 1748
SmiMI CAYNNNNRTG 4 cut(s) 520, 758, 981, 1884
SmlI CTYRAG 6 cut(s) 284, 354, 561, 1501, 2450, 2520
SmoI CTYRAG 6 cut(s) 284, 354, 561, 1501, 2450, 2520
SnaBI TACGTA 1 cut(s) 1120
SsiI CCGC 1 cut(s) 625
SspI AATATT 1 cut(s) 1492
StyD4I CCNGG 6 cut(s) 37, 1041, 1446, 1522, 1756, 2065
StyI CCWWGG 3 cut(s) 102, 861, 2130
TaaI ACNGT 5 cut(s) 421, 909, 1850, 1877, 2108
TaiI ACGT 1 cut(s) 1122
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 4 cut(s) 341, 794, 1775, 2234
Tru1I TTAA 5 cut(s) 285, 555, 1056, 1443, 2451
Tru9I TTAA 5 cut(s) 285, 555, 1056, 1443, 2451
TscAI CASTG 9 cut(s) 63, 471, 823, 914, 1102, 1566, 1831, 1936, 2091
TseFI GTSAC 7 cut(s) 811, 1377, 1404, 1426, 1577, 1585, 1877
TseI GCWGC 9 cut(s) 182, 881, 1000, 1277, 1556, 1784, 1926, 2348, 2599
Tsp45I GTSAC 7 cut(s) 811, 1377, 1404, 1426, 1577, 1585, 1877
TspDTI ATGAA 7 cut(s) 177, 501, 541, 1182, 1494, 1973, 2256
TspRI CASTG 9 cut(s) 63, 471, 823, 914, 1102, 1566, 1831, 1936, 2091
Van91I CCANNNNNTGG 3 cut(s) 38, 1757, 2066
Vha464I CTTAAG 2 cut(s) 284, 2450
VpaK11BI GGWCC 1 cut(s) 1748
XagI CCTNNNNNAGG 1 cut(s) 1504
XapI RAATTY 3 cut(s) 203, 252, 2418
XbaI TCTAGA 1 cut(s) 1789
XceI RCATGY 1 cut(s) 1262
XcmI CCANNNNNNNNNTGG 3 cut(s) 376, 1823, 2542
XmiI GTMKAC 4 cut(s) 233, 973, 1183, 2399
XmnI GAANNNNTTC 2 cut(s) 111, 2139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.