RchiOBHm_Chr6g0253331

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000538
Physical Location & Seq
Reverse (-)
8469976 .. 8471990
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22716

Sequence Viewer

Length: 312 bp
ATGATCAAAGAGTTGGTAGAACAAATCAAAAGGTTGGAAGCTTGTTTAGCCACAGAAGAGAGCAACAGGGCAAAGATTGATCGGGCTATCGATTCCATCGAGACACAAGTCACCACCGCGAGAGATGGATTGGTCTCGTACTTGGCACAATTCTCTTCCATCGAAGGATCGACCCAAGCAGCTAACAATAATAAATCAATTTGGTGTTCCTCTTGCCGTAAATATCTAGATGCTCAAGTGCTCCAACAATTGATGGCCAAGGTGAGCTTTTCCCTTAATTTTTGGTTTTATGCATCATCAACTTTCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

103

Amino Acids

11.64

Weight (kDa)

6.22

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 119
AciI CCGC 1 cut(s) 117
AclWI GGATC 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 255
AfaI GTAC 1 cut(s) 140
AluBI AGCT 3 cut(s) 41, 182, 267
AluI AGCT 3 cut(s) 41, 182, 267
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 2 cut(s) 95, 139
AlwI GGATC 1 cut(s) 175
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 103, 274
BalI TGGCCA 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 191
BccI CCATC 4 cut(s) 104, 119, 167, 247
BceAI ACGGC 1 cut(s) 201
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 95, 139
BfaI CTAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmsI GCATC 2 cut(s) 220, 302
BoxI GACNNNNGTC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 219
Bsa29I ATCGAT 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 243
BsmAI GTCTC 2 cut(s) 95, 139
BsnI GGCC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 3 cut(s) 3, 79, 167
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 257
BspDI ATCGAT 1 cut(s) 90
BspFNI CGCG 1 cut(s) 119
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 3 cut(s) 3, 79, 167
BssT1I CCWWGG 1 cut(s) 258
Bst6I CTCTTC 2 cut(s) 51, 160
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 3 cut(s) 6, 82, 170
BstMAI GTCTC 2 cut(s) 95, 139
BstMBI GATC 3 cut(s) 3, 79, 167
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstPAI GACNNNNGTC 1 cut(s) 107
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 1 cut(s) 257
BsuTUI ATCGAT 1 cut(s) 90
ClaI ATCGAT 1 cut(s) 90
Csp6I GTAC 1 cut(s) 139
CviJI RGCY 6 cut(s) 41, 50, 86, 182, 257, 267
CviKI_1 RGCY 6 cut(s) 41, 50, 86, 182, 257, 267
CviQI GTAC 1 cut(s) 139
DpnI GATC 3 cut(s) 5, 81, 169
DpnII GATC 3 cut(s) 3, 79, 167
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 51, 160
EarI CTCTTC 2 cut(s) 51, 160
Eco130I CCWWGG 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 258
FaiI YATR 1 cut(s) 291
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 1 cut(s) 92
HphI GGTGA 2 cut(s) 103, 274
Hpy188III TCNNGA 2 cut(s) 100, 227
HpyAV CCTTC 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 79, 167
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 1 cut(s) 52
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 2 cut(s) 220, 302
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 109
MalI GATC 3 cut(s) 5, 81, 169
MboI GATC 3 cut(s) 3, 79, 167
MboII GAAGA 2 cut(s) 68, 147
MfeI CAATTG 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 243
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 4 cut(s) 149, 198, 248, 277
MluNI TGGCCA 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 15, 268
MnlI CCTC 1 cut(s) 220
Mox20I TGGCCA 1 cut(s) 257
Mph1103I ATGCAT 1 cut(s) 295
MscI TGGCCA 1 cut(s) 257
MseI TTAA 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 257
MunI CAATTG 1 cut(s) 248
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 3 cut(s) 3, 79, 167
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 181
PshAI GACNNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 3 cut(s) 3, 79, 167
SduI GDGCHC 1 cut(s) 243
SetI ASST 5 cut(s) 35, 43, 184, 264, 269
SfaNI GCATC 2 cut(s) 220, 302
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 4 cut(s) 149, 198, 248, 277
SsiI CCGC 1 cut(s) 117
SspMI CTAG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 258
TaqI TCGA 4 cut(s) 90, 99, 162, 170
TasI AATT 4 cut(s) 149, 198, 248, 277
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 109
XbaI TCTAGA 1 cut(s) 226
XspI CTAG 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.