Rroxscaffold_7G00212160

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000538
Physical Location & Seq
Forward (+)
62626567 .. 62627587
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212160.1

Sequence Viewer

Length: 756 bp
ATGTATGAGCATTATAAGAAGTCGAATCATTCTCTTGCTATCAGTTGCAGTAAAAAAGATCCAGTTGTTTTTTGTTACTTCTGCAAGATAAATGCAAAAGCTCATCAAGTGATCCAACAATTGCAGGCTTTCTCCAAGGATAAATCTTCTTCATCCAAGCTAGAGAAGCTCGATGCTATGATGGTTGATGTTTCCAATCTCATTTCTGAACCATTTCCTAGCTTTGATTTTCATCAACCAGAGGCTAAGTCATCTGTTGGCCAGGACGAGTATGCATTGGCCAAGGAAGGACTCCAGAAGATCTTTGATCAGGGGTTAGAAGCTTTAGCTGATGACCAAGTGCAAAAAGAGTTTCTCACTTATACAGCCATGCTTTTATCAGTTGATTCGTGCTCATTGCAGTTGAAGGCTAACCTTTCATCATTCACAGAAAACCTCCCAGAGGAAACCTCCACTTTTAGTTCCAAGTATACTGAGACGAAGAAAAAAAGTATTGCCTCAGAGGAGAAAATTGCCAACCTTAAGGCCTGGATTCAAAAGTTGGAAGCTTCTCTAGCCACAGAAAAGAGAAACAAGGCAAAGATTGATGAGGTTTTGGATTCCATCGAGACACAAGTAATCACTGCCAGAGATGGATTGGTCTCAGACTTGGCACAAGTGTCTGCCATGGAGGGAACAACCCAAGCTGCTAACCTAGTAGCTCAACAACAGTCAGCGTGGAATAGCTTAAGGACTACTTTTACCAAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

251

Amino Acids

27.95

Weight (kDa)

5.68

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
AccI GTMKAC 1 cut(s) 470
AclWI GGATC 2 cut(s) 53, 106
AcoI YGGCCR 2 cut(s) 259, 279
AfiI CCNNNNNNNGG 1 cut(s) 442
AflII CTTAAG 2 cut(s) 521, 727
AgsI TTSAA 2 cut(s) 406, 536
AjnI CCWGG 2 cut(s) 261, 527
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 3 cut(s) 470, 602, 646
AlwI GGATC 2 cut(s) 53, 106
AoxI GGCC 3 cut(s) 259, 279, 525
ApeKI GCWGC 1 cut(s) 686
Asp700I GAANNNNTTC 1 cut(s) 213
BalI TGGCCA 2 cut(s) 261, 281
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 673
BccI CCATC 3 cut(s) 175, 611, 626
BciT130I CCWGG 2 cut(s) 263, 529
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 3 cut(s) 470, 602, 646
BfaI CTAG 4 cut(s) 161, 219, 554, 695
BfrI CTTAAG 2 cut(s) 521, 727
BglII AGATCT 1 cut(s) 300
BisI GCNGC 1 cut(s) 687
BlsI GCNGC 1 cut(s) 688
Bme1390I CCNGG 2 cut(s) 263, 529
BmrFI CCNGG 2 cut(s) 263, 529
BmsI GCATC 1 cut(s) 163
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 646
BsaJI CCNNGG 3 cut(s) 135, 282, 666
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 395
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 2 cut(s) 263, 529
BseDI CCNNGG 3 cut(s) 135, 282, 666
BseGI GGATG 1 cut(s) 152
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 3 cut(s) 465, 513, 657
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 1 cut(s) 673
BshFI GGCC 3 cut(s) 261, 281, 527
BsiHKAI GWGCWC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 3 cut(s) 470, 602, 646
BsmBI CGTCTC 1 cut(s) 470
BsnI GGCC 3 cut(s) 261, 281, 527
Bso31I GGTCTC 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 4 cut(s) 58, 111, 300, 307
Bsp19I CCATGG 1 cut(s) 666
BspANI GGCC 3 cut(s) 261, 281, 527
BspCNI CTCAG 3 cut(s) 466, 512, 656
BspPI GGATC 2 cut(s) 53, 106
BspTI CTTAAG 2 cut(s) 521, 727
BspTNI GGTCTC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 395
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 135, 282, 666
BssMI GATC 4 cut(s) 58, 111, 300, 307
BssNAI GTATAC 1 cut(s) 471
BssT1I CCWWGG 3 cut(s) 135, 282, 666
Bst1107I GTATAC 1 cut(s) 471
Bst2UI CCWGG 2 cut(s) 263, 529
Bst4CI ACNGT 1 cut(s) 711
BstAFI CTTAAG 2 cut(s) 521, 727
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 4 cut(s) 246, 474, 499, 643
BstDSI CCRYGG 1 cut(s) 666
BstENI CCTNNNNNAGG 1 cut(s) 440
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 4 cut(s) 61, 114, 303, 310
BstMAI GTCTC 3 cut(s) 470, 602, 646
BstMBI GATC 4 cut(s) 58, 111, 300, 307
BstMWI GCNNNNNNNGC 2 cut(s) 166, 554
BstNI CCWGG 2 cut(s) 263, 529
BstSCI CCNGG 2 cut(s) 261, 527
BstV1I GCAGC 1 cut(s) 673
BstX2I RGATCY 2 cut(s) 58, 300
BstYI RGATCY 2 cut(s) 58, 300
BstZ17I GTATAC 1 cut(s) 471
BsuRI GGCC 3 cut(s) 261, 281, 527
BtgI CCRYGG 1 cut(s) 666
BtsCI GGATG 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 1 cut(s) 126
CviAII CATG 3 cut(s) 370, 667, 753
DdeI CTNAG 4 cut(s) 246, 474, 499, 643
DpnI GATC 4 cut(s) 60, 113, 302, 309
DpnII GATC 4 cut(s) 58, 111, 300, 307
EaeI YGGCCR 2 cut(s) 259, 279
Eco130I CCWWGG 3 cut(s) 135, 282, 666
Eco147I AGGCCT 1 cut(s) 527
Eco31I GGTCTC 1 cut(s) 646
EcoNI CCTNNNNNAGG 1 cut(s) 440
EcoRII CCWGG 2 cut(s) 261, 527
EcoT14I CCWWGG 3 cut(s) 135, 282, 666
EcoT22I ATGCAT 1 cut(s) 277
ErhI CCWWGG 3 cut(s) 135, 282, 666
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 3 cut(s) 373, 670, 756
FaiI YATR 9 cut(s) 6, 15, 179, 273, 363, 371, 471, 668, 754
FalI AAGNNNNNCTT 2 cut(s) 721, 753
FatI CATG 3 cut(s) 369, 666, 752
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 1 cut(s) 687
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 687
FspBI CTAG 4 cut(s) 161, 219, 554, 695
GluI GCNGC 1 cut(s) 687
GsuI CTGGAG 1 cut(s) 278
HaeIII GGCC 3 cut(s) 261, 281, 527
Hin1II CATG 3 cut(s) 373, 670, 756
HindIII AAGCTT 2 cut(s) 321, 546
HinfI GANTC 5 cut(s) 25, 291, 386, 532, 599
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 3 cut(s) 208, 502, 646
Hpy188III TCNNGA 2 cut(s) 295, 607
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 2 cut(s) 281, 400
HpyCH4III ACNGT 1 cut(s) 711
HpyCH4V TGCA 8 cut(s) 48, 84, 95, 124, 275, 343, 400, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 554
HpyF3I CTNAG 4 cut(s) 246, 474, 499, 643
Hsp92II CATG 3 cut(s) 373, 670, 756
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 4 cut(s) 58, 111, 300, 307
Lsp1109I GCAGC 1 cut(s) 673
LweI GCATC 1 cut(s) 163
MaeI CTAG 4 cut(s) 161, 219, 554, 695
MaeIII GTNAC 1 cut(s) 74
MalI GATC 4 cut(s) 60, 113, 302, 309
MboI GATC 4 cut(s) 58, 111, 300, 307
MboII GAAGA 4 cut(s) 138, 141, 310, 493
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 2 cut(s) 58, 300
MhlI GDGCHC 1 cut(s) 395
MlsI TGGCCA 2 cut(s) 261, 281
MluCI AATT 2 cut(s) 119, 510
MluNI TGGCCA 2 cut(s) 261, 281
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 2 cut(s) 139, 522
MnlI CCTC 8 cut(s) 235, 436, 446, 460, 496, 508, 583, 664
Mox20I TGGCCA 2 cut(s) 261, 281
Mph1103I ATGCAT 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 213
MscI TGGCCA 2 cut(s) 261, 281
MseI TTAA 2 cut(s) 522, 728
Msp20I TGGCCA 2 cut(s) 261, 281
MspCI CTTAAG 2 cut(s) 521, 727
MspR9I CCNGG 2 cut(s) 263, 529
MunI CAATTG 1 cut(s) 119
MvaI CCWGG 2 cut(s) 263, 529
MwoI GCNNNNNNNGC 2 cut(s) 166, 554
NcoI CCATGG 1 cut(s) 666
NdeII GATC 4 cut(s) 58, 111, 300, 307
NlaIII CATG 3 cut(s) 373, 670, 756
NsiI ATGCAT 1 cut(s) 277
PceI AGGCCT 1 cut(s) 527
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 4 cut(s) 25, 386, 532, 599
PkrI GCNGC 1 cut(s) 688
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PsiI TTATAA 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 261, 527
PspGI CCWGG 2 cut(s) 261, 527
PsuI RGATCY 2 cut(s) 58, 300
SaqAI TTAA 2 cut(s) 522, 728
SatI GCNGC 1 cut(s) 687
Sau3AI GATC 4 cut(s) 58, 111, 300, 307
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 2 cut(s) 263, 529
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 1 cut(s) 163
SmlI CTYRAG 2 cut(s) 521, 727
SmoI CTYRAG 2 cut(s) 521, 727
Sse9I AATT 2 cut(s) 119, 510
SseBI AGGCCT 1 cut(s) 527
SspMI CTAG 4 cut(s) 161, 219, 554, 695
StuI AGGCCT 1 cut(s) 527
StyD4I CCNGG 2 cut(s) 261, 527
StyI CCWWGG 3 cut(s) 135, 282, 666
TaaI ACNGT 1 cut(s) 711
TaqI TCGA 3 cut(s) 23, 171, 606
TasI AATT 2 cut(s) 119, 510
TfiI GAWTC 4 cut(s) 25, 386, 532, 599
Tru1I TTAA 2 cut(s) 522, 728
Tru9I TTAA 2 cut(s) 522, 728
TscAI CASTG 1 cut(s) 628
TseI GCWGC 1 cut(s) 686
TspDTI ATGAA 3 cut(s) 141, 221, 408
TspRI CASTG 1 cut(s) 628
Vha464I CTTAAG 2 cut(s) 521, 727
XagI CCTNNNNNAGG 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 4 cut(s) 161, 219, 554, 695
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.