FvH4_2g04050

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000538
Physical Location & Seq
Reverse (-)
3191084 .. 3197922
6839 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04050.t4

Sequence Viewer

Length: 1926 bp
ATGGCGATCAAGCGCCTCCGAACCAAGTGGACTCCGATTCAGCGCGAAACGCTCGAGAAGGCCTATTCAGTGGAGAAAACTCCGTCGGAGGCGACGAAGGAGGAGCTGTCGAAGCAGTTGGAGCTCGGGTATGAGCAAGTCACGGTTTGGTTCATGAACCGGAGAGCCAAGGATCGGCGGCAGGGGCTTGTCGCCAAGAAGTCCAGAATGACACGTCATCAGCTCGCCACACTCGAGAAGACCTACGCCTCGGAGAAGAATCCGTCGGTGTCGAAGAGGGAGGAGATAGGGAAGAAGGTGGGGATGAGTGAGATTCAGGTGAGGCTGTGGTACAACAAGAAGAGGTTCGAGGATCAGGGGAAGGAGAGGAAGAAGCGGGGTCCCGGGGCCAAGAAGGCGCCGAAATCGGCACTGTCTTCGTCCTGTGATCACCTGGCTTTCGTGTCCGCTGACCTCACTGGCATTCCCAATCCTGACACTCCCTGCAAAAGTTATACAAGATGTCAGAATCCCAATGAGAACTGGTGTTGTTTGTGCTGCAAGGACGTGTTCTGTAGTGTTGATTTGACGAATGGGCACTTGTTTCAGCATTTCAAGCAGACAGATCACTGTCTTGCTGTTAGCTGCAGTGATAAATCAATTTGGTGCTACTCCTGCAATTCATTCTTAGATGCCCAGGCAATTCCACAATTAAGTGTTTTTTCTTCATCCTCCAATGCTTCTGGGGAGCCATCCTCCTCATCCAGGCTAGAGACCCCCGATGCCTCTAAGGATTCATCCTCCTCATCCAGGCTAGAGAACCTTGATGCTCTGATGGTTGATGTTACTGATCTCATATCCAAGCCATCTCCATGCCCCAATTTTCATCCATTGGAGGATAACTTATTTGTCGACCAGGATAAGCTTGCAGTAGCCAAGAAGGGACTCCAGAAGATCTTTGATTGTGGTTTAGAAGCTTTAGCTGATCCCCACGTACAAGAAGAGTTTCTTGCTTATTCAGCCGCAGTTCTATCAGTTGATTCATGCCCATCAGATTTGAAGGTCATTCTTTCGTCTTTCAGAGGCAATCTCTCGGAGCAGACCTGTGCTTTCCTCCAAGCTCAACATGAGTTAAAGGTGGCCTCCGACCTATCAGCCTCGATTACTGAGAGAAGGTTTGTTCTCCGTTATCATCATTCGAAATATGCTGAGGTCAAGAAACAAATTATTGCCTCAGATGAGAAAGTTGCGAACCTTAAGGCCATGATCAAAAGGTTGGAAGCTTCTTTGGCTGAGGAAAAGAGCAACAGAGAGAAGATTGATCGGGTTTTGGACTCTATCGAGACAGGAGTAATGGATGCTAGAGATGGTTTGCTCTCAGACATAGAACAAGTGTCTGCCATGGAGGGAACGACCAAAGCAGCCAACCAGTTAGTAGCTCAACGCCACTCGGCGTGGGAGAACCTAAGGAGTACTTTTACAGAGGCTCGAATGGGTCGATCATCTTCATCCAAGCTAGAGAGCATTGATGCAATTATTGTTGATGTTACTGATATCTTGTCTAAGAGATGTCCTAGCATCATTGATCATCCACAGTTGGATGCTCAGTCATTTGTAGGCCAGGATGAGCTTGCATTGGCTAAGGAGGGACTCCAAAAGATCTTTGATTGCGGATTAAAGGCTCTAGCTGATCCCGTAGTGCAAGAAGAGTTTCTCTTTTGCTCAACCACAGTGCTATCAGCCGAGTCATGTCCCTCAGAGTTGAAGGTTAAACTCTCCTCATTTAGGTGCAATCTTGCGGAGGAAACCTCTGCTTTCATGAAAGCTCAAGCTGATTTGAAGGTGGCCTCAGACATATCATCGTCAATCACTCAGAAGAAGTTTGTAGTGCGGCAACAAACTTTAAAGTGTGACGGAGGTGAAGAAAGAAATGGTAGCCTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

642

Amino Acids

71.28

Weight (kDa)

7.43

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 15 - 64 2.9e-11 Homeodomain
zf-UBP PF02148 115 - 174 1.9e-13 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 397
AccI GTMKAC 1 cut(s) 891
AccII CGCG 1 cut(s) 45
AciI CCGC 7 cut(s) 178, 376, 447, 1002, 1650, 1778, 1870
AclWI GGATC 4 cut(s) 180, 360, 959, 1664
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 3 cut(s) 332, 975, 1453
AfiI CCNNNNNNNGG 4 cut(s) 174, 744, 789, 1764
AflII CTTAAG 1 cut(s) 1235
AflIII ACRYGT 2 cut(s) 212, 546
AgsI TTSAA 4 cut(s) 595, 1039, 1744, 1819
AjiI CACGTC 2 cut(s) 215, 547
AjnI CCWGG 6 cut(s) 432, 675, 743, 788, 894, 1599
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 2 cut(s) 746, 1316
AlwI GGATC 4 cut(s) 180, 360, 959, 1664
Ama87I CYCGRG 4 cut(s) 53, 125, 233, 383
AoxI GGCC 6 cut(s) 60, 387, 1119, 1239, 1597, 1824
ApeKI GCWGC 3 cut(s) 537, 624, 1400
Asp700I GAANNNNTTC 3 cut(s) 344, 984, 1689
AspLEI GCGC 3 cut(s) 15, 45, 400
AspS9I GGNCC 2 cut(s) 380, 387
AsuC2I CCSGG 2 cut(s) 384, 385
AsuHPI GGTGA 3 cut(s) 331, 422, 1910
AsuII TTCGAA 1 cut(s) 1178
AvaI CYCGRG 4 cut(s) 53, 125, 233, 383
AvaII GGWCC 1 cut(s) 380
AxyI CCTNAGG 2 cut(s) 1445, 1919
BaeGI GKGCMC 1 cut(s) 579
BanI GGYRCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 245, 408
Bbv12I GWGCWC 1 cut(s) 126
BbvCI CCTCAGC 2 cut(s) 1188, 1272
BbvI GCAGC 3 cut(s) 524, 611, 1412
BccI CCATC 5 cut(s) 739, 808, 853, 1036, 1340
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BciT130I CCWGG 6 cut(s) 434, 677, 745, 790, 896, 1601
BclI TGATCA 3 cut(s) 427, 1245, 1564
BcnI CCSGG 2 cut(s) 384, 385
BcoDI GTCTC 2 cut(s) 746, 1316
BfaI CTAG 6 cut(s) 749, 794, 1341, 1496, 1554, 1664
BfmI CTRYAG 2 cut(s) 553, 625
BfoI RGCGCY 2 cut(s) 16, 401
BfrI CTTAAG 1 cut(s) 1235
BglI GCCNNNNNGGC 1 cut(s) 395
BglII AGATCT 2 cut(s) 933, 1638
BisI GCNGC 6 cut(s) 179, 538, 625, 1002, 1401, 1871
BlsI GCNGC 6 cut(s) 180, 539, 626, 1003, 1402, 1872
BmcAI AGTACT 1 cut(s) 1453
Bme1390I CCNGG 8 cut(s) 384, 385, 434, 677, 745, 790, 896, 1601
Bme18I GGWCC 1 cut(s) 380
BmeT110I CYCGRG 4 cut(s) 53, 125, 233, 383
BmgBI CACGTC 2 cut(s) 215, 547
BmgT120I GGNCC 2 cut(s) 380, 387
BmiI GGNNCC 5 cut(s) 381, 382, 388, 399, 729
BmrFI CCNGG 8 cut(s) 384, 385, 434, 677, 745, 790, 896, 1601
BmsI GCATC 7 cut(s) 661, 751, 796, 1327, 1498, 1566, 1570
BpiI GAAGAC 2 cut(s) 245, 408
BplI GAGNNNNNCTC 6 cut(s) 719, 751, 1053, 1085, 1772, 1804
BpmI CTGGAG 1 cut(s) 911
Bpu10I CCTNAGC 3 cut(s) 1188, 1272, 1620
Bpu14I TTCGAA 1 cut(s) 1178
BpuEI CTTGAG 1 cut(s) 1791
BpuMI CCSGG 2 cut(s) 384, 385
BsaAI YACGTR 1 cut(s) 973
BsaHI GRCGYC 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 6 cut(s) 168, 249, 383, 384, 675, 1380
BsaWI WCCGGW 1 cut(s) 159
BsaXI ACNNNNNCTCC 4 cut(s) 92, 113, 122, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 744, 789, 1764
Bse1I ACTGG 3 cut(s) 463, 527, 1408
Bse21I CCTNAGG 2 cut(s) 1445, 1919
BseBI CCWGG 6 cut(s) 434, 677, 745, 790, 896, 1601
BseDI CCNNGG 6 cut(s) 168, 249, 383, 384, 675, 1380
BseLI CCNNNNNNNGG 4 cut(s) 174, 744, 789, 1764
BseMII CTCAG 9 cut(s) 1137, 1179, 1227, 1263, 1371, 1598, 1749, 1842, 1865
BseNI ACTGG 3 cut(s) 463, 527, 1408
BseRI GAGGAG 5 cut(s) 116, 296, 727, 772, 1747
BseSI GKGCMC 1 cut(s) 579
BseXI GCAGC 3 cut(s) 524, 611, 1412
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 6 cut(s) 62, 389, 1121, 1241, 1599, 1826
BshNI GGYRCC 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 126
BsiHKCI CYCGRG 4 cut(s) 53, 125, 233, 383
BsiSI CCGG 2 cut(s) 160, 384
BslFI GGGAC 4 cut(s) 366, 936, 1641, 1716
BslI CCNNNNNNNGG 4 cut(s) 174, 744, 789, 1764
BsmAI GTCTC 2 cut(s) 746, 1316
BsmFI GGGAC 4 cut(s) 366, 936, 1641, 1716
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 6 cut(s) 62, 389, 1121, 1241, 1599, 1826
Bso31I GGTCTC 1 cut(s) 746
BsoBI CYCGRG 4 cut(s) 53, 125, 233, 383
Bsp119I TTCGAA 1 cut(s) 1178
Bsp1286I GDGCHC 2 cut(s) 126, 579
Bsp19I CCATGG 1 cut(s) 1380
BspACI CCGC 7 cut(s) 178, 376, 447, 1002, 1650, 1778, 1870
BspANI GGCC 6 cut(s) 62, 389, 1121, 1241, 1599, 1826
BspCNI CTCAG 9 cut(s) 1138, 1180, 1226, 1264, 1370, 1597, 1748, 1841, 1864
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 2 cut(s) 153, 1797
BspLI GGNNCC 5 cut(s) 381, 382, 388, 399, 729
BspMAI CTGCAG 1 cut(s) 629
BspPI GGATC 4 cut(s) 180, 360, 959, 1664
BspT104I TTCGAA 1 cut(s) 1178
BspT107I GGYRCC 1 cut(s) 397
BspTI CTTAAG 1 cut(s) 1235
BspTNI GGTCTC 1 cut(s) 746
BsrI ACTGG 3 cut(s) 463, 527, 1408
BssECI CCNNGG 6 cut(s) 168, 249, 383, 384, 675, 1380
BssNI GRCGYC 1 cut(s) 398
BssT1I CCWWGG 2 cut(s) 168, 1380
Bst2UI CCWGG 6 cut(s) 434, 677, 745, 790, 896, 1601
Bst4CI ACNGT 5 cut(s) 145, 414, 611, 1575, 1711
Bst6I CTCTTC 4 cut(s) 269, 335, 975, 1680
BstACI GRCGYC 1 cut(s) 398
BstAFI CTTAAG 1 cut(s) 1235
BstBAI YACGTR 1 cut(s) 973
BstBI TTCGAA 1 cut(s) 1178
BstC8I GCNNGC 3 cut(s) 225, 906, 1611
BstDSI CCRYGG 1 cut(s) 1380
BstENI CCTNNNNNAGG 3 cut(s) 742, 787, 1762
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 2 cut(s) 16, 401
BstHHI GCGC 3 cut(s) 15, 45, 400
BstMAI GTCTC 2 cut(s) 746, 1316
BstMWI GCNNNNNNNGC 9 cut(s) 49, 112, 121, 184, 395, 595, 654, 998, 1268
BstNI CCWGG 6 cut(s) 434, 677, 745, 790, 896, 1601
BstSCI CCNGG 8 cut(s) 382, 383, 432, 675, 743, 788, 894, 1599
BstSFI CTRYAG 2 cut(s) 553, 625
BstSLI GKGCMC 1 cut(s) 579
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 524, 611, 1412
BstV2I GAAGAC 2 cut(s) 245, 408
BstX2I RGATCY 2 cut(s) 933, 1638
BstYI RGATCY 2 cut(s) 933, 1638
Bsu36I CCTNAGG 2 cut(s) 1445, 1919
BsuRI GGCC 6 cut(s) 62, 389, 1121, 1241, 1599, 1826
BtgI CCRYGG 1 cut(s) 1380
BtrI CACGTC 2 cut(s) 215, 547
BtsI GCAGTG 1 cut(s) 634
BtsIMutI CAGTG 6 cut(s) 75, 410, 456, 607, 634, 1716
Cac8I GCNNGC 3 cut(s) 225, 906, 1611
CciI TCATGA 2 cut(s) 153, 1797
CfoI GCGC 3 cut(s) 15, 45, 400
Cfr13I GGNCC 2 cut(s) 380, 387
Cfr9I CCCGGG 1 cut(s) 383
Csp6I GTAC 3 cut(s) 331, 974, 1452
CviAII CATG 8 cut(s) 154, 852, 1023, 1106, 1243, 1381, 1728, 1798
CviQI GTAC 3 cut(s) 331, 974, 1452
DinI GGCGCC 1 cut(s) 399
DraI TTTAAA 1 cut(s) 1884
Eam1104I CTCTTC 4 cut(s) 269, 335, 975, 1680
EarI CTCTTC 4 cut(s) 269, 335, 975, 1680
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 168, 1380
Eco147I AGGCCT 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 746
Eco32I GATATC 1 cut(s) 1534
Eco47I GGWCC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 124
Eco81I CCTNAGG 2 cut(s) 1445, 1919
Eco88I CYCGRG 4 cut(s) 53, 125, 233, 383
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 3 cut(s) 742, 787, 1762
EcoO109I RGGNCCY 1 cut(s) 380
EcoRII CCWGG 6 cut(s) 432, 675, 743, 788, 894, 1599
EcoRV GATATC 1 cut(s) 1534
EcoT14I CCWWGG 2 cut(s) 168, 1380
EcoT38I GRGCYC 1 cut(s) 126
EgeI GGCGCC 1 cut(s) 399
EheI GGCGCC 1 cut(s) 399
ErhI CCWWGG 2 cut(s) 168, 1380
FaeI CATG 8 cut(s) 157, 855, 1026, 1109, 1246, 1384, 1731, 1801
FalI AAGNNNNNCTT 4 cut(s) 972, 1004, 1438, 1470
FaqI GGGAC 4 cut(s) 366, 936, 1641, 1716
FatI CATG 8 cut(s) 153, 851, 1022, 1105, 1242, 1380, 1727, 1797
FauI CCCGC 1 cut(s) 369
FbaI TGATCA 3 cut(s) 427, 1245, 1564
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 6 cut(s) 179, 538, 625, 1002, 1401, 1871
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 6 cut(s) 179, 538, 625, 1002, 1401, 1871
FspBI CTAG 6 cut(s) 749, 794, 1341, 1496, 1554, 1664
GlaI GCGC 3 cut(s) 14, 44, 399
GluI GCNGC 6 cut(s) 179, 538, 625, 1002, 1401, 1871
GsuI CTGGAG 1 cut(s) 911
HaeII RGCGCY 2 cut(s) 16, 401
HaeIII GGCC 6 cut(s) 62, 389, 1121, 1241, 1599, 1826
HapII CCGG 2 cut(s) 160, 384
HhaI GCGC 3 cut(s) 15, 45, 400
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 8 cut(s) 157, 855, 1026, 1109, 1246, 1384, 1731, 1801
Hin6I GCGC 3 cut(s) 13, 43, 398
HinP1I GCGC 3 cut(s) 13, 43, 398
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 3 cut(s) 902, 954, 1260
HpaII CCGG 2 cut(s) 160, 384
HphI GGTGA 3 cut(s) 331, 422, 1910
Hpy166II GTNNAC 2 cut(s) 30, 892
Hpy188III TCNNGA 9 cut(s) 55, 154, 204, 235, 473, 928, 1195, 1321, 1798
Hpy8I GTNNAC 2 cut(s) 30, 892
Hpy99I CGWCG 3 cut(s) 88, 97, 268
HpyCH4III ACNGT 5 cut(s) 145, 414, 611, 1575, 1711
HpyCH4IV ACGT 3 cut(s) 214, 546, 972
HpyCH4V TGCA 9 cut(s) 486, 540, 627, 657, 908, 1511, 1613, 1681, 1770
HpyF10VI GCNNNNNNNGC 9 cut(s) 49, 112, 121, 184, 395, 595, 654, 998, 1268
HpySE526I ACGT 3 cut(s) 214, 546, 972
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 8 cut(s) 157, 855, 1026, 1109, 1246, 1384, 1731, 1801
HspAI GCGC 3 cut(s) 13, 43, 398
KasI GGCGCC 1 cut(s) 397
KflI GGGWCCC 1 cut(s) 380
Ksp22I TGATCA 3 cut(s) 427, 1245, 1564
LmnI GCTCC 4 cut(s) 103, 121, 727, 1075
Lsp1109I GCAGC 3 cut(s) 524, 611, 1412
LweI GCATC 7 cut(s) 661, 751, 796, 1327, 1498, 1566, 1570
MaeI CTAG 6 cut(s) 749, 794, 1341, 1496, 1554, 1664
MaeII ACGT 3 cut(s) 214, 546, 972
MaeIII GTNAC 4 cut(s) 139, 823, 1525, 1889
MflI RGATCY 2 cut(s) 933, 1638
MhlI GDGCHC 2 cut(s) 126, 579
MluCI AATT 7 cut(s) 639, 658, 681, 689, 859, 1203, 1512
Mly113I GGCGCC 1 cut(s) 398
MlyI GAGTC 5 cut(s) 25, 918, 1307, 1623, 1733
MmeI TCCRAC 5 cut(s) 66, 99, 1149, 1236, 1557
MroXI GAANNNNTTC 3 cut(s) 344, 984, 1689
MseI TTAA 6 cut(s) 692, 1112, 1236, 1655, 1749, 1883
MslI CAYNNNNRTG 2 cut(s) 850, 1765
MspA1I CMGCKG 1 cut(s) 449
MspCI CTTAAG 1 cut(s) 1235
MspI CCGG 2 cut(s) 160, 384
MspR9I CCNGG 8 cut(s) 384, 385, 434, 677, 745, 790, 896, 1601
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 6 cut(s) 434, 677, 745, 790, 896, 1601
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 9 cut(s) 49, 112, 121, 184, 395, 595, 654, 998, 1268
NarI GGCGCC 1 cut(s) 398
NciI CCSGG 2 cut(s) 384, 385
NcoI CCATGG 1 cut(s) 1380
NlaIII CATG 8 cut(s) 157, 855, 1026, 1109, 1246, 1384, 1731, 1801
NlaIV GGNNCC 5 cut(s) 381, 382, 388, 399, 729
NmeAIII GCCGAG 2 cut(s) 1409, 1747
NmuCI GTSAC 2 cut(s) 139, 1889
NspV TTCGAA 1 cut(s) 1178
PaeR7I CTCGAG 2 cut(s) 53, 233
PagI TCATGA 2 cut(s) 153, 1797
PceI AGGCCT 1 cut(s) 62
PcsI WCGNNNNNNNCGW 3 cut(s) 92, 231, 1474
PctI GAATGC 1 cut(s) 462
PdmI GAANNNNTTC 3 cut(s) 344, 984, 1689
PfeI GAWTC 6 cut(s) 37, 259, 313, 508, 773, 1019
PkrI GCNGC 6 cut(s) 180, 539, 626, 1003, 1402, 1872
PleI GAGTC 5 cut(s) 25, 918, 1307, 1623, 1732
PluTI GGCGCC 1 cut(s) 401
PpsI GAGTC 5 cut(s) 25, 918, 1307, 1623, 1732
Ppu21I YACGTR 1 cut(s) 973
PpuMI RGGWCCY 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 380
Psp6I CCWGG 6 cut(s) 432, 675, 743, 788, 894, 1599
PspGI CCWGG 6 cut(s) 432, 675, 743, 788, 894, 1599
PspN4I GGNNCC 5 cut(s) 381, 382, 388, 399, 729
PspPI GGNCC 2 cut(s) 380, 387
PspPPI RGGWCCY 1 cut(s) 380
PstI CTGCAG 1 cut(s) 629
PsuI RGATCY 2 cut(s) 933, 1638
RsaI GTAC 3 cut(s) 332, 975, 1453
RsaNI GTAC 3 cut(s) 331, 974, 1452
RseI CAYNNNNRTG 2 cut(s) 850, 1765
SacI GAGCTC 1 cut(s) 126
SalI GTCGAC 1 cut(s) 890
SaqAI TTAA 6 cut(s) 692, 1112, 1236, 1655, 1749, 1883
SatI GCNGC 6 cut(s) 179, 538, 625, 1002, 1401, 1871
Sau96I GGNCC 2 cut(s) 380, 387
ScaI AGTACT 1 cut(s) 1453
SchI GAGTC 5 cut(s) 25, 918, 1307, 1623, 1733
ScrFI CCNGG 8 cut(s) 384, 385, 434, 677, 745, 790, 896, 1601
SduI GDGCHC 2 cut(s) 126, 579
SfaNI GCATC 7 cut(s) 661, 751, 796, 1327, 1498, 1566, 1570
SfcI CTRYAG 2 cut(s) 553, 625
SfoI GGCGCC 1 cut(s) 399
Sfr274I CTCGAG 2 cut(s) 53, 233
SfuI TTCGAA 1 cut(s) 1178
SinI GGWCC 1 cut(s) 380
SlaI CTCGAG 2 cut(s) 53, 233
SmaI CCCGGG 1 cut(s) 385
SmiMI CAYNNNNRTG 2 cut(s) 850, 1765
SmlI CTYRAG 4 cut(s) 53, 233, 1235, 1806
SmoI CTYRAG 4 cut(s) 53, 233, 1235, 1806
Sse9I AATT 7 cut(s) 639, 658, 681, 689, 859, 1203, 1512
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 7 cut(s) 178, 376, 447, 1002, 1650, 1778, 1870
SspDI GGCGCC 1 cut(s) 397
SspMI CTAG 6 cut(s) 749, 794, 1341, 1496, 1554, 1664
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 8 cut(s) 382, 383, 432, 675, 743, 788, 894, 1599
StyI CCWWGG 2 cut(s) 168, 1380
TaaI ACNGT 5 cut(s) 145, 414, 611, 1575, 1711
TaiI ACGT 3 cut(s) 217, 549, 975
TasI AATT 7 cut(s) 639, 658, 681, 689, 859, 1203, 1512
TatI WGTACW 1 cut(s) 1451
TauI GCSGC 3 cut(s) 181, 1004, 1873
TfiI GAWTC 6 cut(s) 37, 259, 313, 508, 773, 1019
Tru1I TTAA 6 cut(s) 692, 1112, 1236, 1655, 1749, 1883
Tru9I TTAA 6 cut(s) 692, 1112, 1236, 1655, 1749, 1883
TscAI CASTG 6 cut(s) 75, 417, 463, 614, 634, 1716
TseFI GTSAC 2 cut(s) 139, 1889
TseI GCWGC 3 cut(s) 537, 624, 1400
Tsp45I GTSAC 2 cut(s) 139, 1889
TspGWI ACGGA 4 cut(s) 72, 252, 1154, 1908
TspMI CCCGGG 1 cut(s) 383
TspRI CASTG 6 cut(s) 75, 417, 463, 614, 634, 1716
Vha464I CTTAAG 1 cut(s) 1235
VpaK11BI GGWCC 1 cut(s) 380
XagI CCTNNNNNAGG 3 cut(s) 742, 787, 1762
XhoI CTCGAG 2 cut(s) 53, 233
XmaI CCCGGG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 891
XmnI GAANNNNTTC 3 cut(s) 344, 984, 1689
XspI CTAG 6 cut(s) 749, 794, 1341, 1496, 1554, 1664
ZrmI AGTACT 1 cut(s) 1453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.