RchiOBHm_Chr6g0253321

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000538
Physical Location & Seq
Reverse (-)
8468865 .. 8469515
651 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22715

Sequence Viewer

Length: 651 bp
ATGATTGCCTTGGACGAGAAAGTTGCCAACTATAAGTCCACGATCAAAGAGTTGGAGGCACAAATCAAATGGTTGGAAGCTTGTTTAGCCACAGAAGTGAGCAACAGGAAAAAGATTGATGAGGTTATTGATTCGATCGAGACACAAGTCACCACTGCGAGAGATGGACTGGTCTCGGACTTGGCACGAGTGTCTTCCATGGAGGGAACGACCCAAGCAGCTTACCAGTTAGTAACTCGAAAACAGTCGCACTGGGACAACCTAAAGATTATGTTTACTAGGTTTGCAATTGCAAACGCCACCATGAGTCGACATCCTAGTGTGAAGTGGGCTCAGCAGCCTGATACGCTTTACATCACTATTGAGTTGCCTGATGCCCAGGATGTAAAGCTTACACTGGAGCCTGAAGGAAAGTTTCTATTCTCTGCTACAGCTGGAGCAGAAAAGACACCCTATGTAGTTGATCTTGATCTCTATGACAAGATTGATGTAAATGAGAGTAGGTATAGTGTTGGCTCGAGAAACATCTTTCACCTAGTGAAAAAAGCTGAAAATAAATGGTGGAGCAGATTGATAAAACAAGAAGGAAAAGCTCCCGGGTTCTTGAAAGTTGATTGGGATAATTGGGGAGATGAGCAGGCGGGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

216

Amino Acids

24.53

Weight (kDa)

5.52

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 106 - 182 1.3e-11 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 310
AciI CCGC 1 cut(s) 641
AcuI CTGAAG 1 cut(s) 426
AdeI CACNNNGTG 1 cut(s) 538
AgsI TTSAA 1 cut(s) 607
AjnI CCWGG 1 cut(s) 378
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 6 cut(s) 80, 221, 391, 434, 548, 593
AluI AGCT 6 cut(s) 80, 221, 391, 434, 548, 593
Alw26I GTCTC 2 cut(s) 134, 178
Ama87I CYCGRG 2 cut(s) 517, 596
ApeKI GCWGC 2 cut(s) 218, 337
AsuC2I CCSGG 2 cut(s) 597, 598
AsuHPI GGTGA 2 cut(s) 142, 524
AvaI CYCGRG 2 cut(s) 517, 596
BanII GRGCYC 1 cut(s) 334
BauI CACGAG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 230, 349
BccI CCATC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 1 cut(s) 380
BcnI CCSGG 2 cut(s) 597, 598
BcoDI GTCTC 2 cut(s) 134, 178
BfaI CTAG 4 cut(s) 279, 318, 536, 649
BfmI CTRYAG 1 cut(s) 429
BisI GCNGC 2 cut(s) 219, 338
BlpI GCTNAGC 1 cut(s) 333
BlsI GCNGC 2 cut(s) 220, 339
Bme1390I CCNGG 3 cut(s) 380, 597, 598
BmeT110I CYCGRG 2 cut(s) 517, 596
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 3 cut(s) 380, 597, 598
BmrI ACTGGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 262
BoxI GACNNNNGTC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 2 cut(s) 419, 456
Bpu1102I GCTNAGC 1 cut(s) 333
BpuMI CCSGG 2 cut(s) 597, 598
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 4 cut(s) 9, 198, 378, 596
Bse1I ACTGG 4 cut(s) 174, 226, 257, 402
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 4 cut(s) 9, 198, 378, 596
BseGI GGATG 2 cut(s) 313, 388
BseJI GATNNNNATC 1 cut(s) 468
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 4 cut(s) 174, 226, 257, 402
BseXI GCAGC 2 cut(s) 230, 349
Bsh1285I CGRYCG 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 138
BsiHKCI CYCGRG 2 cut(s) 517, 596
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 134, 178
BsmFI GGGAC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 178
BsoBI CYCGRG 2 cut(s) 517, 596
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 5 cut(s) 42, 135, 463, 469, 645
Bsp1720I GCTNAGC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 1 cut(s) 641
BspCNI CTCAG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 402
BspTNI GGTCTC 1 cut(s) 178
BsrI ACTGG 4 cut(s) 174, 226, 257, 402
BssECI CCNNGG 4 cut(s) 9, 198, 378, 596
BssMI GATC 5 cut(s) 42, 135, 463, 469, 645
BssSI CACGAG 1 cut(s) 186
BssT1I CCWWGG 2 cut(s) 9, 198
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 313, 388
BstKTI GATC 5 cut(s) 45, 138, 466, 472, 648
BstMAI GTCTC 2 cut(s) 134, 178
BstMBI GATC 5 cut(s) 42, 135, 463, 469, 645
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 86, 346
BstNI CCWGG 1 cut(s) 380
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 3 cut(s) 378, 595, 596
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 230, 349
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 313, 388
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 3 cut(s) 153, 250, 395
Cac8I GCNNGC 1 cut(s) 639
Cfr9I CCCGGG 1 cut(s) 596
CviAII CATG 2 cut(s) 199, 304
DdeI CTNAG 1 cut(s) 333
DpnI GATC 5 cut(s) 44, 137, 465, 471, 647
DpnII GATC 5 cut(s) 42, 135, 463, 469, 645
DraIII CACNNNGTG 1 cut(s) 538
Eco130I CCWWGG 2 cut(s) 9, 198
Eco24I GRGCYC 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 2 cut(s) 517, 596
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 2 cut(s) 9, 198
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 2 cut(s) 9, 198
FaeI CATG 2 cut(s) 202, 307
FaiI YATR 7 cut(s) 33, 200, 272, 305, 456, 477, 507
FaqI GGGAC 1 cut(s) 269
FatI CATG 2 cut(s) 198, 303
FauI CCCGC 1 cut(s) 634
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 219, 338
FokI GGATG 2 cut(s) 300, 395
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 2 cut(s) 219, 338
FspBI CTAG 4 cut(s) 279, 318, 536, 649
GluI GCNGC 2 cut(s) 219, 338
GsuI CTGGAG 2 cut(s) 419, 456
HapII CCGG 1 cut(s) 597
Hin1II CATG 2 cut(s) 202, 307
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
HindIII AAGCTT 2 cut(s) 78, 389
HinfI GANTC 2 cut(s) 131, 307
HpaII CCGG 1 cut(s) 597
HphI GGTGA 2 cut(s) 142, 524
Hpy166II GTNNAC 3 cut(s) 39, 276, 311
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 4 cut(s) 139, 467, 519, 604
Hpy8I GTNNAC 3 cut(s) 39, 276, 311
HpyAV CCTTC 2 cut(s) 401, 578
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 287, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 346
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 2 cut(s) 202, 307
Kzo9I GATC 5 cut(s) 42, 135, 463, 469, 645
LmnI GCTCC 4 cut(s) 400, 437, 564, 598
Lsp1109I GCAGC 2 cut(s) 230, 349
LweI GCATC 1 cut(s) 364
MaeI CTAG 4 cut(s) 279, 318, 536, 649
MaeIII GTNAC 2 cut(s) 148, 232
MalI GATC 5 cut(s) 44, 137, 465, 471, 647
MboI GATC 5 cut(s) 42, 135, 463, 469, 645
MboII GAAGA 1 cut(s) 186
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 2 cut(s) 288, 622
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 2 cut(s) 33, 54
MnlI CCTC 3 cut(s) 49, 115, 196
MslI CAYNNNNRTG 2 cut(s) 95, 318
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 3 cut(s) 380, 597, 598
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 2 cut(s) 86, 346
NciI CCSGG 2 cut(s) 597, 598
NcoI CCATGG 1 cut(s) 198
NdeII GATC 5 cut(s) 42, 135, 463, 469, 645
NlaIII CATG 2 cut(s) 202, 307
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 95
PaeR7I CTCGAG 1 cut(s) 517
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 220, 339
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PshAI GACNNNNGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 402
PsuI RGATCY 1 cut(s) 645
PvuI CGATCG 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 434
RseI CAYNNNNRTG 2 cut(s) 95, 318
SalI GTCGAC 1 cut(s) 309
SatI GCNGC 2 cut(s) 219, 338
Sau3AI GATC 5 cut(s) 42, 135, 463, 469, 645
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 3 cut(s) 380, 597, 598
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 429
Sfr274I CTCGAG 1 cut(s) 517
SlaI CTCGAG 1 cut(s) 517
SmaI CCCGGG 1 cut(s) 598
SmiMI CAYNNNNRTG 2 cut(s) 95, 318
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 2 cut(s) 288, 622
SsiI CCGC 1 cut(s) 641
SspMI CTAG 4 cut(s) 279, 318, 536, 649
StyD4I CCNGG 3 cut(s) 378, 595, 596
StyI CCWWGG 2 cut(s) 9, 198
TaaI ACNGT 1 cut(s) 246
TaqI TCGA 5 cut(s) 134, 138, 238, 310, 518
TasI AATT 2 cut(s) 288, 622
TfiI GAWTC 1 cut(s) 131
TscAI CASTG 3 cut(s) 160, 257, 402
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 218, 337
Tsp45I GTSAC 1 cut(s) 148
TspMI CCCGGG 1 cut(s) 596
TspRI CASTG 3 cut(s) 160, 257, 402
XhoI CTCGAG 1 cut(s) 517
XmaI CCCGGG 1 cut(s) 596
XmiI GTMKAC 1 cut(s) 310
XspI CTAG 4 cut(s) 279, 318, 536, 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.