Rmu_sc0001257.1_g000016

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001257.1
OG0000538
Physical Location & Seq
Reverse (-)
41372 .. 43880
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001257.1_g000016.1.cds

Sequence Viewer

Length: 1230 bp
atgatggtgagcatcatacgcagacaaagcattgtcttcaagccagctgcagccaagctagagagcattgatgcaaaggttgttgatgttactgatctcttgtccaagccatttcctaccatcaatgttcatccacagttggatgctccgttgtttgttggccaggacgagcttgccttggctaaggagggactccgaatggtctttgatcgcgggttaaaagctctagctgatcccaaggtgcaagaagagtttctcctttactcagccacgctgctctcagccgagtcatgcccatcagaattgaaggttaacctttcatcattcagatgtaatctttcggaagaaacctctgctttcattaaagctcaagatgagttgaaggtggcctcagagttatcagcctcgattacccagaagttgtttgtggtgaggcaacaaacttcgaagtatgatgaggtaaagaaagaaatgattgcctcggacgagaaaattgccaactataagtccatgatcaaagagttggaagcttgtttagccacagaagtgagcaacaggaaaaagattgatgaggttatcgattcgatcgagacacaagtcaccatagcgagagatagactggtcccggacttggcacgagtgtcttccatgaagggaacgacccaagtagcttaccagttagcaactcgaaaacagtcgcactgggataacctaaagattatgtttactaggtttgcaattgcagacgccaccatgagtcgacatcctagtgtgaagtgggctcagcagcctgatacgctttacatcactattgagttgcctgatgcccaggatgtaaagcttacactggagcctgaaggaaagtttttattctctgctacagctggagcagaaaagacaccctatgtagttgatcttgatctctatgacaagattgatgtaaatgaaagaattgaaattcatatgcaaagcacacatgatttcacctatgtgatcgacacaccatatccaatatacatggtgcatgtagatgaagtgaagaaagagttggaagcacatataaaaaggttggaagcttgtttagccacggaagagaacaacaggctagggcaaacttcgaagtatgatgaggtgaaggaagaaaaggtcgccttggacgagaaagttgccgacttcaaggccatgcatgatcaaagagttggaagcacaagttttaccaagtttgcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

409

Amino Acids

46.21

Weight (kDa)

5.34

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 760
AccII CGCG 1 cut(s) 213
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 1 cut(s) 957
AcuI CTGAAG 1 cut(s) 876
AcyI GRCGYC 1 cut(s) 747
AfiI CCNNNNNNNGG 1 cut(s) 631
AgsI TTSAA 5 cut(s) 40, 307, 382, 956, 1177
AjnI CCWGG 2 cut(s) 162, 828
AjuI GAANNNNNNNTTGG 2 cut(s) 1031, 1063
AleI CACNNNNGTG 2 cut(s) 545, 989
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 1 cut(s) 227
AoxI GGCC 3 cut(s) 160, 387, 1179
ApeKI GCWGC 4 cut(s) 47, 50, 274, 787
ApoI RAATTY 1 cut(s) 957
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 622
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 5 cut(s) 19, 442, 592, 976, 1144
AsuII TTCGAA 2 cut(s) 446, 1118
AvaII GGWCC 1 cut(s) 622
BalI TGGCCA 1 cut(s) 162
BanII GRGCYC 1 cut(s) 784
BauI CACGAG 1 cut(s) 636
BbsI GAAGAC 2 cut(s) 28, 636
BbvI GCAGC 4 cut(s) 34, 62, 261, 799
BccI CCATC 2 cut(s) 128, 304
BcgI CGANNNNNNTGC 4 cut(s) 476, 510, 1148, 1182
BciT130I CCWGG 2 cut(s) 164, 830
BclI TGATCA 2 cut(s) 513, 1189
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 5 cut(s) 59, 227, 729, 768, 1106
BfmI CTRYAG 2 cut(s) 48, 879
BisI GCNGC 4 cut(s) 48, 51, 275, 788
BlpI GCTNAGC 1 cut(s) 783
BlsI GCNGC 4 cut(s) 49, 52, 276, 789
Bme1390I CCNGG 3 cut(s) 164, 626, 830
Bme18I GGWCC 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 622
BmiI GGNNCC 2 cut(s) 624, 852
BmrFI CCNGG 3 cut(s) 164, 626, 830
BmrI ACTGGG 1 cut(s) 712
BmsI GCATC 4 cut(s) 21, 61, 133, 814
BmuI ACTGGG 1 cut(s) 712
BoxI GACNNNNGTC 1 cut(s) 596
BpiI GAAGAC 2 cut(s) 28, 636
BpmI CTGGAG 2 cut(s) 869, 906
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 783
Bpu14I TTCGAA 2 cut(s) 446, 1118
BpuEI CTTGAG 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 626
Bsa29I ATCGAT 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 747
BsaJI CCNNGG 6 cut(s) 177, 237, 480, 828, 1086, 1152
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse1I ACTGG 4 cut(s) 624, 676, 707, 852
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 2 cut(s) 164, 830
BseCI ATCGAT 1 cut(s) 579
BseDI CCNNGG 6 cut(s) 177, 237, 480, 828, 1086, 1152
BseGI GGATG 4 cut(s) 130, 148, 763, 838
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMII CTCAG 4 cut(s) 279, 294, 405, 797
BseNI ACTGG 4 cut(s) 624, 676, 707, 852
BseXI GCAGC 4 cut(s) 34, 62, 261, 799
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 588
BshFI GGCC 3 cut(s) 162, 389, 1181
BshVI ATCGAT 1 cut(s) 579
BsiEI CGRYCG 1 cut(s) 588
BsiSI CCGG 1 cut(s) 626
BslFI GGGAC 2 cut(s) 204, 608
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 1 cut(s) 584
BsmFI GGGAC 2 cut(s) 204, 608
BsnI GGCC 3 cut(s) 162, 389, 1181
Bsp119I TTCGAA 2 cut(s) 446, 1118
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 9 cut(s) 94, 208, 232, 513, 585, 913, 919, 993, 1189
Bsp1720I GCTNAGC 1 cut(s) 783
BspACI CCGC 1 cut(s) 213
BspANI GGCC 3 cut(s) 162, 389, 1181
BspCNI CTCAG 4 cut(s) 278, 293, 404, 796
BspDI ATCGAT 1 cut(s) 579
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 624, 852
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 227
BspT104I TTCGAA 2 cut(s) 446, 1118
BsrI ACTGG 4 cut(s) 624, 676, 707, 852
BssECI CCNNGG 6 cut(s) 177, 237, 480, 828, 1086, 1152
BssMI GATC 9 cut(s) 94, 208, 232, 513, 585, 913, 919, 993, 1189
BssNI GRCGYC 1 cut(s) 747
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 3 cut(s) 177, 237, 1152
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 2 cut(s) 164, 830
Bst4CI ACNGT 2 cut(s) 138, 696
Bst6I CTCTTC 2 cut(s) 243, 1086
BstACI GRCGYC 1 cut(s) 747
BstBI TTCGAA 2 cut(s) 446, 1118
BstC8I GCNNGC 2 cut(s) 45, 174
BstDEI CTNAG 5 cut(s) 183, 265, 280, 391, 783
BstDSI CCRYGG 1 cut(s) 1086
BstF5I GGATG 4 cut(s) 130, 148, 763, 838
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 9 cut(s) 97, 211, 235, 516, 588, 916, 922, 996, 1192
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 9 cut(s) 94, 208, 232, 513, 585, 913, 919, 993, 1189
BstMCI CGRYCG 1 cut(s) 588
BstMWI GCNNNNNNNGC 5 cut(s) 18, 27, 536, 796, 1082
BstNI CCWGG 2 cut(s) 164, 830
BstNSI RCATGY 1 cut(s) 1028
BstPAI GACNNNNGTC 1 cut(s) 596
BstSCI CCNGG 3 cut(s) 162, 624, 828
BstSFI CTRYAG 2 cut(s) 48, 879
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 4 cut(s) 34, 62, 261, 799
BstV2I GAAGAC 2 cut(s) 28, 636
Bsu15I ATCGAT 1 cut(s) 579
BsuRI GGCC 3 cut(s) 162, 389, 1181
BsuTUI ATCGAT 1 cut(s) 579
BtgI CCRYGG 1 cut(s) 1086
BtsCI GGATG 4 cut(s) 130, 148, 763, 838
BtsIMutI CAGTG 2 cut(s) 700, 845
Cac8I GCNNGC 2 cut(s) 45, 174
Cfr13I GGNCC 1 cut(s) 622
ClaI ATCGAT 1 cut(s) 579
CseI GACGC 1 cut(s) 755
CviAII CATG 9 cut(s) 291, 511, 649, 754, 977, 1018, 1025, 1183, 1187
DdeI CTNAG 5 cut(s) 183, 265, 280, 391, 783
DpnI GATC 9 cut(s) 96, 210, 234, 515, 587, 915, 921, 995, 1191
DpnII GATC 9 cut(s) 94, 208, 232, 513, 585, 913, 919, 993, 1189
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 243, 1086
EarI CTCTTC 2 cut(s) 243, 1086
Eco130I CCWWGG 3 cut(s) 177, 237, 1152
Eco24I GRGCYC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 622
Eco57I CTGAAG 1 cut(s) 876
EcoRII CCWGG 2 cut(s) 162, 828
EcoT14I CCWWGG 3 cut(s) 177, 237, 1152
EcoT22I ATGCAT 1 cut(s) 1188
EcoT38I GRGCYC 1 cut(s) 784
ErhI CCWWGG 3 cut(s) 177, 237, 1152
FaeI CATG 9 cut(s) 294, 514, 652, 757, 980, 1021, 1028, 1186, 1190
FalI AAGNNNNNCTT 2 cut(s) 1136, 1168
FaqI GGGAC 2 cut(s) 204, 608
FatI CATG 9 cut(s) 290, 510, 648, 753, 976, 1017, 1024, 1182, 1186
FauI CCCGC 1 cut(s) 206
FauNDI CATATG 1 cut(s) 963
FbaI TGATCA 2 cut(s) 513, 1189
FblI GTMKAC 1 cut(s) 760
Fnu4HI GCNGC 4 cut(s) 48, 51, 275, 788
FokI GGATG 4 cut(s) 117, 155, 750, 845
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 4 cut(s) 48, 51, 275, 788
FspBI CTAG 5 cut(s) 59, 227, 729, 768, 1106
GluI GCNGC 4 cut(s) 48, 51, 275, 788
GsuI CTGGAG 2 cut(s) 869, 906
HaeIII GGCC 3 cut(s) 162, 389, 1181
HapII CCGG 1 cut(s) 626
HgaI GACGC 1 cut(s) 755
Hin1I GRCGYC 1 cut(s) 747
Hin1II CATG 9 cut(s) 294, 514, 652, 757, 980, 1021, 1028, 1186, 1190
HincII GTYRAC 2 cut(s) 313, 761
HindII GTYRAC 2 cut(s) 313, 761
HindIII AAGCTT 3 cut(s) 528, 839, 1074
HinfI GANTC 4 cut(s) 192, 287, 581, 757
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 1 cut(s) 626
HphI GGTGA 5 cut(s) 19, 442, 592, 976, 1144
Hpy166II GTNNAC 3 cut(s) 313, 726, 761
Hpy188I TCNGA 6 cut(s) 197, 301, 329, 343, 394, 484
Hpy188III TCNNGA 3 cut(s) 371, 589, 917
Hpy8I GTNNAC 3 cut(s) 313, 726, 761
HpyAV CCTTC 5 cut(s) 301, 376, 646, 851, 1129
HpyCH4III ACNGT 2 cut(s) 138, 696
HpyCH4V TGCA 8 cut(s) 50, 74, 244, 737, 743, 967, 1024, 1186
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 27, 536, 796, 1082
HpyF3I CTNAG 5 cut(s) 183, 265, 280, 391, 783
Hsp92I GRCGYC 1 cut(s) 747
Hsp92II CATG 9 cut(s) 294, 514, 652, 757, 980, 1021, 1028, 1186, 1190
Ksp22I TGATCA 2 cut(s) 513, 1189
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 9 cut(s) 94, 208, 232, 513, 585, 913, 919, 993, 1189
LmnI GCTCC 3 cut(s) 151, 850, 887
Lsp1109I GCAGC 4 cut(s) 34, 62, 261, 799
LweI GCATC 4 cut(s) 21, 61, 133, 814
MaeI CTAG 5 cut(s) 59, 227, 729, 768, 1106
MaeIII GTNAC 2 cut(s) 88, 598
MalI GATC 9 cut(s) 96, 210, 234, 515, 587, 915, 921, 995, 1191
MboI GATC 9 cut(s) 94, 208, 232, 513, 585, 913, 919, 993, 1189
MboII GAAGA 7 cut(s) 28, 260, 356, 636, 1051, 1103, 1151
MfeI CAATTG 1 cut(s) 738
MhlI GDGCHC 1 cut(s) 784
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 5 cut(s) 302, 492, 738, 951, 957
MluNI TGGCCA 1 cut(s) 162
MlyI GAGTC 3 cut(s) 186, 296, 766
MmeI TCCRAC 5 cut(s) 120, 504, 1029, 1050, 1180
MnlI CCTC 9 cut(s) 181, 361, 400, 415, 426, 451, 490, 565, 1123
Mox20I TGGCCA 1 cut(s) 162
Mph1103I ATGCAT 1 cut(s) 1188
MroXI GAANNNNTTC 1 cut(s) 252
MscI TGGCCA 1 cut(s) 162
MseI TTAA 3 cut(s) 218, 312, 363
MslI CAYNNNNRTG 5 cut(s) 328, 545, 768, 989, 1029
Msp20I TGGCCA 1 cut(s) 162
MspA1I CMGCKG 2 cut(s) 47, 884
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 3 cut(s) 164, 626, 830
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 2 cut(s) 164, 830
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 5 cut(s) 18, 27, 536, 796, 1082
NciI CCSGG 1 cut(s) 626
NdeI CATATG 1 cut(s) 963
NdeII GATC 9 cut(s) 94, 208, 232, 513, 585, 913, 919, 993, 1189
NlaIII CATG 9 cut(s) 294, 514, 652, 757, 980, 1021, 1028, 1186, 1190
NlaIV GGNNCC 2 cut(s) 624, 852
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 598
NsiI ATGCAT 1 cut(s) 1188
NspI RCATGY 1 cut(s) 1028
NspV TTCGAA 2 cut(s) 446, 1118
OliI CACNNNNGTG 2 cut(s) 545, 989
PcsI WCGNNNNNNNCGW 2 cut(s) 585, 1155
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 581
PfoI TCCNGGA 1 cut(s) 624
PkrI GCNGC 4 cut(s) 49, 52, 276, 789
Ple19I CGATCG 1 cut(s) 588
PleI GAGTC 3 cut(s) 186, 295, 765
PpsI GAGTC 3 cut(s) 186, 295, 765
PshAI GACNNNNGTC 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 162, 828
PspGI CCWGG 2 cut(s) 162, 828
PspN4I GGNNCC 2 cut(s) 624, 852
PspPI GGNCC 1 cut(s) 622
PstI CTGCAG 1 cut(s) 52
PvuI CGATCG 1 cut(s) 588
PvuII CAGCTG 2 cut(s) 47, 884
RseI CAYNNNNRTG 5 cut(s) 328, 545, 768, 989, 1029
SalI GTCGAC 1 cut(s) 759
SaqAI TTAA 3 cut(s) 218, 312, 363
SatI GCNGC 4 cut(s) 48, 51, 275, 788
Sau3AI GATC 9 cut(s) 94, 208, 232, 513, 585, 913, 919, 993, 1189
Sau96I GGNCC 1 cut(s) 622
SchI GAGTC 3 cut(s) 186, 296, 766
ScrFI CCNGG 3 cut(s) 164, 626, 830
SduI GDGCHC 1 cut(s) 784
SfaNI GCATC 4 cut(s) 21, 61, 133, 814
SfcI CTRYAG 2 cut(s) 48, 879
SfuI TTCGAA 2 cut(s) 446, 1118
SinI GGWCC 1 cut(s) 622
SmiMI CAYNNNNRTG 5 cut(s) 328, 545, 768, 989, 1029
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 5 cut(s) 302, 492, 738, 951, 957
SsiI CCGC 1 cut(s) 213
SspMI CTAG 5 cut(s) 59, 227, 729, 768, 1106
StyD4I CCNGG 3 cut(s) 162, 624, 828
StyI CCWWGG 3 cut(s) 177, 237, 1152
TaaI ACNGT 2 cut(s) 138, 696
TaqI TCGA 9 cut(s) 407, 446, 579, 584, 588, 688, 760, 996, 1118
TasI AATT 5 cut(s) 302, 492, 738, 951, 957
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 3 cut(s) 218, 312, 363
Tru9I TTAA 3 cut(s) 218, 312, 363
TscAI CASTG 2 cut(s) 707, 852
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 4 cut(s) 47, 50, 274, 787
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 7 cut(s) 119, 309, 349, 665, 950, 960, 1047
TspGWI ACGGA 2 cut(s) 138, 1103
TspRI CASTG 2 cut(s) 707, 852
VpaK11BI GGWCC 1 cut(s) 622
XapI RAATTY 1 cut(s) 957
XceI RCATGY 1 cut(s) 1028
XmiI GTMKAC 1 cut(s) 760
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 5 cut(s) 59, 227, 729, 768, 1106
Zsp2I ATGCAT 1 cut(s) 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.