Rroxscaffold_7G00212000

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000538
Physical Location & Seq
Forward (+)
62434066 .. 62436530
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212000.1

Sequence Viewer

Length: 816 bp
ATGTATTGTCCACTTTCCAATAACTCATACACGTACTCGCATTTTCAGAGTCGATCATCTGCAGCCAAGCTCGAGAGCATTGATGCAATGGTTGTTAATGTTACTGGTCTCTTGTCCAAGCCAATTCCTAGCATCAATGTTCATCCACAGTTGGATGCTCCGTTGTTTGTTGGCCACGACGAGCTTGCCTTGGCGAAGGAGGGACTCCAGAAGATCTTTGATTGCGGGTTAAAAGCTCTAGCTGATCCCAAAATGCAAGAAGCGTTTCTCCTTTACTCAGCCACACTGCTATCAGCTGAGTCATGCCCCTCAGAATTGAAGGTTAACCTTTCATCATTCAGATGTAATCTTTCGGAAGAAAGCTCTGCTTTCATTAAAGCTCAAGATGAGTTGAAGGTGGCCTCAGAGTTATCAGTCTCGATTACCCAGAAGAAGTTTGTTGTGCGACAACAAATTTCAAAGTATGATGAGGTAAAGAAAGAAATGACTGCCTCAGACGAGAAAGTTGCCAAATATAAGTCCATGATCAAAGAGATGGAGGCACAAATCAAAGGGTTGGAAGCTTGTTTAGCCACAGAAGTGAGCAACAGGAAAAAGATTGATGAGGTTATCGATTCGATCGATACACAACTCACCACTGCGAGAGATGGACTGGTCTCTGACTTGGAACAAGTGTCTTCCATGGAGGGAACGATCCAAGCAGCTTACCAGTTAGTAACTCGAAAACAGTCGCACTGGGATAACCTAAAAACTATGTTGACTAGGTTTGCAATTGCATACGCCACCATGAGTCGACAACTCGACATCCTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

271

Amino Acids

30.12

Weight (kDa)

5.69

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 793
AciI CCGC 1 cut(s) 225
AclWI GGATC 2 cut(s) 239, 688
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 453
AfaI GTAC 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 3 cut(s) 319, 394, 459
AleI CACNNNNGTG 1 cut(s) 578
AluBI AGCT 9 cut(s) 70, 184, 236, 242, 296, 363, 380, 563, 704
AluI AGCT 9 cut(s) 70, 184, 236, 242, 296, 363, 380, 563, 704
Alw26I GTCTC 3 cut(s) 113, 421, 661
AlwI GGATC 2 cut(s) 239, 688
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 2 cut(s) 172, 399
ApeKI GCWGC 2 cut(s) 62, 701
ApoI RAATTY 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 625
AvaI CYCGRG 1 cut(s) 71
BalI TGGCCA 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 669
BbvI GCAGC 2 cut(s) 74, 713
BccI CCATC 2 cut(s) 529, 641
BcgI CGANNNNNNTGC 4 cut(s) 167, 201, 488, 522
BclI TGATCA 1 cut(s) 525
BcoDI GTCTC 3 cut(s) 113, 421, 661
BfaI CTAG 4 cut(s) 129, 239, 762, 809
BfmI CTRYAG 1 cut(s) 60
BglII AGATCT 1 cut(s) 213
BisI GCNGC 2 cut(s) 63, 702
BlsI GCNGC 2 cut(s) 64, 703
BmeT110I CYCGRG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 745
BmsI GCATC 3 cut(s) 73, 141, 145
BmuI ACTGGG 1 cut(s) 745
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 366
Bsa29I ATCGAT 2 cut(s) 612, 621
BsaAI YACGTR 1 cut(s) 33
BsaI GGTCTC 2 cut(s) 113, 661
BsaJI CCNNGG 2 cut(s) 189, 681
Bse1I ACTGG 4 cut(s) 109, 657, 709, 740
Bse3DI GCAATG 1 cut(s) 93
BseCI ATCGAT 2 cut(s) 612, 621
BseDI CCNNGG 2 cut(s) 189, 681
BseGI GGATG 3 cut(s) 142, 160, 804
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 5 cut(s) 288, 291, 324, 417, 507
BseNI ACTGG 4 cut(s) 109, 657, 709, 740
BseXI GCAGC 2 cut(s) 74, 713
Bsh1285I CGRYCG 1 cut(s) 621
BshFI GGCC 2 cut(s) 174, 401
BshVI ATCGAT 2 cut(s) 612, 621
BsiEI CGRYCG 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 3 cut(s) 113, 421, 661
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 2 cut(s) 174, 401
Bso31I GGTCTC 2 cut(s) 113, 661
BsoBI CYCGRG 1 cut(s) 71
Bsp143I GATC 6 cut(s) 53, 213, 244, 525, 618, 693
Bsp19I CCATGG 1 cut(s) 681
BspACI CCGC 1 cut(s) 225
BspANI GGCC 2 cut(s) 174, 401
BspCNI CTCAG 5 cut(s) 289, 290, 323, 416, 506
BspDI ATCGAT 2 cut(s) 612, 621
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 2 cut(s) 239, 688
BspTNI GGTCTC 2 cut(s) 113, 661
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 4 cut(s) 109, 657, 709, 740
BssECI CCNNGG 2 cut(s) 189, 681
BssMI GATC 6 cut(s) 53, 213, 244, 525, 618, 693
BssT1I CCWWGG 2 cut(s) 189, 681
Bst4CI ACNGT 2 cut(s) 150, 729
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 5 cut(s) 277, 297, 310, 403, 493
BstDSI CCRYGG 1 cut(s) 681
BstF5I GGATG 3 cut(s) 142, 160, 804
BstKTI GATC 6 cut(s) 56, 216, 247, 528, 621, 696
BstMAI GTCTC 3 cut(s) 113, 421, 661
BstMBI GATC 6 cut(s) 53, 213, 244, 525, 618, 693
BstMCI CGRYCG 1 cut(s) 621
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 74, 713
BstV2I GAAGAC 1 cut(s) 669
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
Bsu15I ATCGAT 2 cut(s) 612, 621
BsuRI GGCC 2 cut(s) 174, 401
BsuTUI ATCGAT 2 cut(s) 612, 621
BtgI CCRYGG 1 cut(s) 681
BtsCI GGATG 3 cut(s) 142, 160, 804
BtsI GCAGTG 2 cut(s) 284, 636
BtsIMutI CAGTG 3 cut(s) 284, 636, 733
Cac8I GCNNGC 1 cut(s) 186
ClaI ATCGAT 2 cut(s) 612, 621
Csp6I GTAC 1 cut(s) 34
CviAII CATG 4 cut(s) 303, 523, 682, 787
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 5 cut(s) 277, 297, 310, 403, 493
DpnI GATC 6 cut(s) 55, 215, 246, 527, 620, 695
DpnII GATC 6 cut(s) 53, 213, 244, 525, 618, 693
EaeI YGGCCR 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 189, 681
Eco31I GGTCTC 2 cut(s) 113, 661
Eco88I CYCGRG 1 cut(s) 71
EcoT14I CCWWGG 2 cut(s) 189, 681
ErhI CCWWGG 2 cut(s) 189, 681
FaeI CATG 4 cut(s) 306, 526, 685, 790
FaiI YATR 9 cut(s) 28, 304, 465, 516, 524, 683, 755, 778, 788
FalI AAGNNNNNCTT 2 cut(s) 352, 384
FaqI GGGAC 1 cut(s) 216
FatI CATG 4 cut(s) 302, 522, 681, 786
FauI CCCGC 1 cut(s) 218
FbaI TGATCA 1 cut(s) 525
FblI GTMKAC 1 cut(s) 793
Fnu4HI GCNGC 2 cut(s) 63, 702
FokI GGATG 3 cut(s) 129, 167, 791
Fsp4HI GCNGC 2 cut(s) 63, 702
FspBI CTAG 4 cut(s) 129, 239, 762, 809
GluI GCNGC 2 cut(s) 63, 702
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 2 cut(s) 174, 401
Hin1II CATG 4 cut(s) 306, 526, 685, 790
HincII GTYRAC 3 cut(s) 325, 759, 794
HindII GTYRAC 3 cut(s) 325, 759, 794
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 5 cut(s) 49, 204, 299, 614, 790
HpaI GTTAAC 1 cut(s) 325
HphI GGTGA 1 cut(s) 625
Hpy166II GTNNAC 4 cut(s) 11, 325, 759, 794
Hpy188I TCNGA 7 cut(s) 48, 313, 341, 355, 406, 496, 661
Hpy188III TCNNGA 4 cut(s) 73, 208, 383, 418
Hpy8I GTNNAC 4 cut(s) 11, 325, 759, 794
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 3 cut(s) 190, 313, 388
HpyCH4III ACNGT 2 cut(s) 150, 729
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 5 cut(s) 62, 86, 256, 770, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 5 cut(s) 277, 297, 310, 403, 493
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 4 cut(s) 306, 526, 685, 790
Ksp22I TGATCA 1 cut(s) 525
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 6 cut(s) 53, 213, 244, 525, 618, 693
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 7 cut(s) 90, 221, 440, 574, 638, 721, 722
Lsp1109I GCAGC 2 cut(s) 74, 713
LweI GCATC 3 cut(s) 73, 141, 145
MaeI CTAG 4 cut(s) 129, 239, 762, 809
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 100, 715
MalI GATC 6 cut(s) 55, 215, 246, 527, 620, 695
MboI GATC 6 cut(s) 53, 213, 244, 525, 618, 693
MboII GAAGA 4 cut(s) 223, 368, 442, 669
MfeI CAATTG 1 cut(s) 771
MflI RGATCY 1 cut(s) 213
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 4 cut(s) 123, 314, 453, 771
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 4 cut(s) 58, 198, 308, 799
MmeI TCCRAC 2 cut(s) 132, 537
MnlI CCTC 8 cut(s) 193, 319, 412, 463, 502, 532, 598, 679
Mox20I TGGCCA 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 264
MscI TGGCCA 1 cut(s) 174
MseI TTAA 4 cut(s) 96, 230, 324, 375
MslI CAYNNNNRTG 3 cut(s) 340, 578, 809
Msp20I TGGCCA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 296
MunI CAATTG 1 cut(s) 771
MwoI GCNNNNNNNGC 1 cut(s) 569
NcoI CCATGG 1 cut(s) 681
NdeII GATC 6 cut(s) 53, 213, 244, 525, 618, 693
NlaIII CATG 4 cut(s) 306, 526, 685, 790
OliI CACNNNNGTG 1 cut(s) 578
PaeR7I CTCGAG 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 614
PkrI GCNGC 2 cut(s) 64, 703
Ple19I CGATCG 1 cut(s) 621
PleI GAGTC 4 cut(s) 57, 198, 307, 798
PpsI GAGTC 4 cut(s) 57, 198, 307, 798
Ppu21I YACGTR 1 cut(s) 33
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 213
PvuI CGATCG 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 3 cut(s) 340, 578, 809
SalI GTCGAC 1 cut(s) 792
SaqAI TTAA 4 cut(s) 96, 230, 324, 375
SatI GCNGC 2 cut(s) 63, 702
Sau3AI GATC 6 cut(s) 53, 213, 244, 525, 618, 693
SchI GAGTC 4 cut(s) 58, 198, 308, 799
SfaNI GCATC 3 cut(s) 73, 141, 145
SfcI CTRYAG 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 3 cut(s) 340, 578, 809
SmlI CTYRAG 2 cut(s) 71, 381
SmoI CTYRAG 2 cut(s) 71, 381
Sse9I AATT 4 cut(s) 123, 314, 453, 771
SsiI CCGC 1 cut(s) 225
SspMI CTAG 4 cut(s) 129, 239, 762, 809
StyI CCWWGG 2 cut(s) 189, 681
TaaI ACNGT 2 cut(s) 150, 729
TaiI ACGT 1 cut(s) 35
TaqI TCGA 9 cut(s) 52, 72, 419, 612, 617, 621, 721, 793, 801
TasI AATT 4 cut(s) 123, 314, 453, 771
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 4 cut(s) 96, 230, 324, 375
Tru9I TTAA 4 cut(s) 96, 230, 324, 375
TscAI CASTG 3 cut(s) 291, 643, 740
TseI GCWGC 2 cut(s) 62, 701
TspDTI ATGAA 3 cut(s) 131, 321, 361
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 3 cut(s) 291, 643, 740
XapI RAATTY 1 cut(s) 453
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 793
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 4 cut(s) 129, 239, 762, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.